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Conserved domains on  [gi|1430561760|ref|WP_113793749|]
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MULTISPECIES: YfhO family protein [Enterococcus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YfhO super family cl47351
Uncharacterized membrane protein YfhO [Function unknown];
11-85 4.28e-08

Uncharacterized membrane protein YfhO [Function unknown];


The actual alignment was detected with superfamily member COG4485:

Pssm-ID: 443579 [Multi-domain]  Cd Length: 860  Bit Score: 48.42  E-value: 4.28e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1430561760  11 DNLYYDFPPVSGFSSMNNKKYLLMLTRLGY-STSNVRAKRNGGTVITDILLSNQYqVIPNQEIQHQATSGVKIIES 85
Cdd:COG4485   509 DPMLYGYNGISHFSSILNGNILDFLGDLGFpSESNSRYRYLGNTLLLDSLLGVKY-LISKKDTGKKDLYGFKLLDS 583
 
Name Accession Description Interval E-value
YfhO COG4485
Uncharacterized membrane protein YfhO [Function unknown];
11-85 4.28e-08

Uncharacterized membrane protein YfhO [Function unknown];


Pssm-ID: 443579 [Multi-domain]  Cd Length: 860  Bit Score: 48.42  E-value: 4.28e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1430561760  11 DNLYYDFPPVSGFSSMNNKKYLLMLTRLGY-STSNVRAKRNGGTVITDILLSNQYqVIPNQEIQHQATSGVKIIES 85
Cdd:COG4485   509 DPMLYGYNGISHFSSILNGNILDFLGDLGFpSESNSRYRYLGNTLLLDSLLGVKY-LISKKDTGKKDLYGFKLLDS 583
YfhO pfam09586
Bacterial membrane protein YfhO; This protein is a conserved membrane protein. The yfhO gene ...
 11-64 3.76e-06

Bacterial membrane protein YfhO; This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family.


Pssm-ID: 430700 [Multi-domain]  Cd Length: 839  Bit Score: 43.04  E-value: 3.76e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1430561760  11 DNLYYDFPPVSGFSSMNNKKYLLMLTRLGYSTSNVRAKRNGGTVITDILLSNQY 64
Cdd:pfam09586 497 DPMKFNYNGISHFSSILNRNILSFLDDLGSRGSVSRYRYQGGTLLTDSLLGVKY 550
 
Name Accession Description Interval E-value
YfhO COG4485
Uncharacterized membrane protein YfhO [Function unknown];
11-85 4.28e-08

Uncharacterized membrane protein YfhO [Function unknown];


Pssm-ID: 443579 [Multi-domain]  Cd Length: 860  Bit Score: 48.42  E-value: 4.28e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1430561760  11 DNLYYDFPPVSGFSSMNNKKYLLMLTRLGY-STSNVRAKRNGGTVITDILLSNQYqVIPNQEIQHQATSGVKIIES 85
Cdd:COG4485   509 DPMLYGYNGISHFSSILNGNILDFLGDLGFpSESNSRYRYLGNTLLLDSLLGVKY-LISKKDTGKKDLYGFKLLDS 583
YfhO pfam09586
Bacterial membrane protein YfhO; This protein is a conserved membrane protein. The yfhO gene ...
 11-64 3.76e-06

Bacterial membrane protein YfhO; This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family.


Pssm-ID: 430700 [Multi-domain]  Cd Length: 839  Bit Score: 43.04  E-value: 3.76e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1430561760  11 DNLYYDFPPVSGFSSMNNKKYLLMLTRLGYSTSNVRAKRNGGTVITDILLSNQY 64
Cdd:pfam09586 497 DPMKFNYNGISHFSSILNRNILSFLDDLGSRGSVSRYRYQGGTLLTDSLLGVKY 550
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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