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Conserved domains on  [gi|1433328437|ref|WP_114237955|]
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MULTISPECIES: ATP-binding protein [Acinetobacter]

Protein Classification

ATP-binding protein( domain architecture ID 11445237)

ATP-binding protein with an AAA (ATPases Associated with various cellular Activities) domain, similar to the ATPase region of Aquifex aeolicus DnaC helicase loader and to Mycobacterium tuberculosis putative ATP-binding protein Rv3427c in insertion sequence

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DnaC COG1484
DNA replication protein DnaC [Replication, recombination and repair];
7-243 4.69e-63

DNA replication protein DnaC [Replication, recombination and repair];


:

Pssm-ID: 441093 [Multi-domain]  Cd Length: 242  Bit Score: 197.31  E-value: 4.69e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437   7 IAQKMQDLKLNGCLNCFVDHYDEMVNSKKTSLEILNELLIAEQNAVSNRKILSLLNKSNIRYpTSSLTEIDCSNKKGLTS 86
Cdd:COG1484     6 LKELLKALKLPGMAEALDELLAQAACDELSYEEFLALLLEAEVAEREQRRIERRLKAARFPA-AKTLEDFDFDAQPGLDR 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437  87 DILQSFADCEWIKSKHNLIFTGATGIGKTWLASAFGTNACKLGFKVIFYNTTELFEDFNTAVNLGTISTLKKRLLSCKLL 166
Cdd:COG1484    85 RQILELATLDFIERGENLILLGPPGTGKTHLAIALGHEACRAGYRVRFTTAPDLVNELKEARADGRLERLLKRLAKVDLL 164

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1433328437 167 ILDDFGLSQINNSWLAHFISVIDKHSDNGSLLITSQYETNLWLNHFEDQTVGEALLDRIVHRSHIFNLAGESMRKKR 243
Cdd:COG1484   165 ILDELGYLPLDAEGAELLFELISDRYERRSTIITSNLPFSEWGEVFGDPTLATAILDRLVHHAHIIELKGESYRLKE 241
 
Name Accession Description Interval E-value
DnaC COG1484
DNA replication protein DnaC [Replication, recombination and repair];
7-243 4.69e-63

DNA replication protein DnaC [Replication, recombination and repair];


Pssm-ID: 441093 [Multi-domain]  Cd Length: 242  Bit Score: 197.31  E-value: 4.69e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437   7 IAQKMQDLKLNGCLNCFVDHYDEMVNSKKTSLEILNELLIAEQNAVSNRKILSLLNKSNIRYpTSSLTEIDCSNKKGLTS 86
Cdd:COG1484     6 LKELLKALKLPGMAEALDELLAQAACDELSYEEFLALLLEAEVAEREQRRIERRLKAARFPA-AKTLEDFDFDAQPGLDR 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437  87 DILQSFADCEWIKSKHNLIFTGATGIGKTWLASAFGTNACKLGFKVIFYNTTELFEDFNTAVNLGTISTLKKRLLSCKLL 166
Cdd:COG1484    85 RQILELATLDFIERGENLILLGPPGTGKTHLAIALGHEACRAGYRVRFTTAPDLVNELKEARADGRLERLLKRLAKVDLL 164

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1433328437 167 ILDDFGLSQINNSWLAHFISVIDKHSDNGSLLITSQYETNLWLNHFEDQTVGEALLDRIVHRSHIFNLAGESMRKKR 243
Cdd:COG1484   165 ILDELGYLPLDAEGAELLFELISDRYERRSTIITSNLPFSEWGEVFGDPTLATAILDRLVHHAHIIELKGESYRLKE 241
IS21_help_AAA NF038214
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ...
 11-242 8.04e-59

IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.


Pssm-ID: 439516  Cd Length: 232  Bit Score: 186.14  E-value: 8.04e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437  11 MQDLKLNGCLNCFVDHYDEMVNSKKTSLEILNELLIAEQNAVSNRKILSLLNKSNIRYPtSSLTEIDCSNKKGLTSDILQ 90
Cdd:NF038214    1 LRQLKLPGMARALEELAEQAAREELSFEEFLALLLEAELAERENRRIERRLKRARFPAA-KTLEDFDFTAAPGLDKAQIR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437  91 SFADCEWIKSKHNLIFTGATGIGKTWLASAFGTNACKLGFKVIFYNTTELFEDFNTAVNLGTISTLKKRLLSCKLLILDD 170
Cdd:NF038214   80 ELATLDFIERAENVLLLGPPGTGKTHLAIALGYAACRQGYRVRFTTAADLVEQLAQARADGRLGRLLRRLARYDLLIIDE 159

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1433328437 171 FGLSQINNSWLAHFISVIDKHSDNGSLLITSQYETNLWLNHFEDQTVGEALLDRIVHRSHIFNLAGESMRKK 242
Cdd:NF038214  160 LGYLPFSREGANLLFELIADRYERGSTIITSNLPFSEWGEVFGDPTLAAAILDRLVHHAHILELKGESYRLK 231
IstB_IS21 pfam01695
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ...
 14-242 1.37e-44

IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.


Pssm-ID: 426385 [Multi-domain]  Cd Length: 238  Bit Score: 149.90  E-value: 1.37e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437  14 LKLNGCLNCFVDHYDEMVNSKKTSLEILNELLIAEQNAVSNRKILSLLNKSNIRyPTSSLTEIDCSNKKGLTSDILQSFA 93
Cdd:pfam01695   6 LKLPGMAEAWEELSQQAASTSLSYEEFLEHLLEEELAWRDTRRLERLLRMAKLP-PHKTLEDFDFTFAPGLDQRIVAELA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437  94 DCEWIKSKHNLIFTGATGIGKTWLASAFGTNACKLGFKVIFYNTTELFEDFNTAVNLGTISTLKKRLLSCKLLILDDFGL 173
Cdd:pfam01695  85 SLSFIDRAQNVVLLGPPGVGKTHLAIALGVEACRAGYSVRFTSAADLVNQLKRAHGDGKLTRKLQQLLKPDVLILDEWGY 164

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1433328437 174 SQINNSWLAHFISVIDKHSDNGSLLITSQYETNLWLNHFEDQTVGEALLDRIVHRSHIFNLAGESMRKK 242
Cdd:pfam01695 165 LPLDQAEANLLFQVISKRYEHRSIILTSNLPFGEWGQVFGDAVLATAILDRLLHHCHIVPIKGESYRLK 233
PRK09183 PRK09183
transposase/IS protein; Provisional
 7-246 9.83e-27

transposase/IS protein; Provisional


Pssm-ID: 181681  Cd Length: 259  Bit Score: 104.02  E-value: 9.83e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437   7 IAQKMQDLKLNGCLNCFVDHYDEMVNSKKTSLEILNELLIAEQNAVSNRKILSLLNKSNirYPT-SSLTEIDCSNKKGLT 85
Cdd:PRK09183    9 LMALCGQLQLESLISAAPALAQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAA--FPAvKTFEEYDFTFATGAP 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437  86 SDILQSFADCEWIKSKHNLIFTGATGIGKTWLASAFGTNACKLGFKVIFYNTTELFEDFNTAVNLGTI-STLKKRLLSCK 164
Cdd:PRK09183   87 QKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYkTTLQRGVMAPR 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437 165 LLILDDFGLSQINNSWLAHFISVIDKHSDNGSLLITSQYETNLWLNHF-EDQTVGEALLDRIVHRSHIFNLAGESMRKKR 243
Cdd:PRK09183  167 LLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTFaGDAALTSAMLDRLLHHSHVVQIKGESYRLKQ 246


                  ...
gi 1433328437 244 GKK 246
Cdd:PRK09183  247 KRK 249
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
 97-231 1.52e-06

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 46.76  E-value: 1.52e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437  97 WIKSKHNLIFTGATGIGKTWLASAFGTNACKLGFKVIFYNTTELFED--FNTAVNLGTISTLKKRLLSCK--LLILDDFG 172
Cdd:cd00009    15 ELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGlvVAELFGHFLVRLLFELAEKAKpgVLFIDEID 94

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1433328437 173 LSQINNSW-----LAHFISVIDKHSDNGSLLITsqyetnlwlNHFEDQTVGEALLDRIVHRSHI 231
Cdd:cd00009    95 SLSRGAQNallrvLETLNDLRIDRENVRVIGAT---------NRPLLGDLDRALYDRLDIRIVI 149
DnaA TIGR00362
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ...
 108-171 6.26e-04

chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273037 [Multi-domain]  Cd Length: 437  Bit Score: 40.59  E-value: 6.26e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1433328437 108 GATGIGKTWLASAFGTNACKLGFKV-IFYNTTELF-EDFNTAVNLGTISTLKKRLLSCKLLILDDF 171
Cdd:TIGR00362 144 GGVGLGKTHLLHAIGNEILENNPNAkVLYVSSEKFtNDFVNALRNNKMEEFKEKYRSVDLLLIDDI 209
 
Name Accession Description Interval E-value
DnaC COG1484
DNA replication protein DnaC [Replication, recombination and repair];
7-243 4.69e-63

DNA replication protein DnaC [Replication, recombination and repair];


Pssm-ID: 441093 [Multi-domain]  Cd Length: 242  Bit Score: 197.31  E-value: 4.69e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437   7 IAQKMQDLKLNGCLNCFVDHYDEMVNSKKTSLEILNELLIAEQNAVSNRKILSLLNKSNIRYpTSSLTEIDCSNKKGLTS 86
Cdd:COG1484     6 LKELLKALKLPGMAEALDELLAQAACDELSYEEFLALLLEAEVAEREQRRIERRLKAARFPA-AKTLEDFDFDAQPGLDR 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437  87 DILQSFADCEWIKSKHNLIFTGATGIGKTWLASAFGTNACKLGFKVIFYNTTELFEDFNTAVNLGTISTLKKRLLSCKLL 166
Cdd:COG1484    85 RQILELATLDFIERGENLILLGPPGTGKTHLAIALGHEACRAGYRVRFTTAPDLVNELKEARADGRLERLLKRLAKVDLL 164

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1433328437 167 ILDDFGLSQINNSWLAHFISVIDKHSDNGSLLITSQYETNLWLNHFEDQTVGEALLDRIVHRSHIFNLAGESMRKKR 243
Cdd:COG1484   165 ILDELGYLPLDAEGAELLFELISDRYERRSTIITSNLPFSEWGEVFGDPTLATAILDRLVHHAHIIELKGESYRLKE 241
IS21_help_AAA NF038214
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ...
 11-242 8.04e-59

IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.


Pssm-ID: 439516  Cd Length: 232  Bit Score: 186.14  E-value: 8.04e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437  11 MQDLKLNGCLNCFVDHYDEMVNSKKTSLEILNELLIAEQNAVSNRKILSLLNKSNIRYPtSSLTEIDCSNKKGLTSDILQ 90
Cdd:NF038214    1 LRQLKLPGMARALEELAEQAAREELSFEEFLALLLEAELAERENRRIERRLKRARFPAA-KTLEDFDFTAAPGLDKAQIR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437  91 SFADCEWIKSKHNLIFTGATGIGKTWLASAFGTNACKLGFKVIFYNTTELFEDFNTAVNLGTISTLKKRLLSCKLLILDD 170
Cdd:NF038214   80 ELATLDFIERAENVLLLGPPGTGKTHLAIALGYAACRQGYRVRFTTAADLVEQLAQARADGRLGRLLRRLARYDLLIIDE 159

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1433328437 171 FGLSQINNSWLAHFISVIDKHSDNGSLLITSQYETNLWLNHFEDQTVGEALLDRIVHRSHIFNLAGESMRKK 242
Cdd:NF038214  160 LGYLPFSREGANLLFELIADRYERGSTIITSNLPFSEWGEVFGDPTLAAAILDRLVHHAHILELKGESYRLK 231
IstB_IS21 pfam01695
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ...
 14-242 1.37e-44

IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.


Pssm-ID: 426385 [Multi-domain]  Cd Length: 238  Bit Score: 149.90  E-value: 1.37e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437  14 LKLNGCLNCFVDHYDEMVNSKKTSLEILNELLIAEQNAVSNRKILSLLNKSNIRyPTSSLTEIDCSNKKGLTSDILQSFA 93
Cdd:pfam01695   6 LKLPGMAEAWEELSQQAASTSLSYEEFLEHLLEEELAWRDTRRLERLLRMAKLP-PHKTLEDFDFTFAPGLDQRIVAELA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437  94 DCEWIKSKHNLIFTGATGIGKTWLASAFGTNACKLGFKVIFYNTTELFEDFNTAVNLGTISTLKKRLLSCKLLILDDFGL 173
Cdd:pfam01695  85 SLSFIDRAQNVVLLGPPGVGKTHLAIALGVEACRAGYSVRFTSAADLVNQLKRAHGDGKLTRKLQQLLKPDVLILDEWGY 164

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1433328437 174 SQINNSWLAHFISVIDKHSDNGSLLITSQYETNLWLNHFEDQTVGEALLDRIVHRSHIFNLAGESMRKK 242
Cdd:pfam01695 165 LPLDQAEANLLFQVISKRYEHRSIILTSNLPFGEWGQVFGDAVLATAILDRLLHHCHIVPIKGESYRLK 233
PRK09183 PRK09183
transposase/IS protein; Provisional
 7-246 9.83e-27

transposase/IS protein; Provisional


Pssm-ID: 181681  Cd Length: 259  Bit Score: 104.02  E-value: 9.83e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437   7 IAQKMQDLKLNGCLNCFVDHYDEMVNSKKTSLEILNELLIAEQNAVSNRKILSLLNKSNirYPT-SSLTEIDCSNKKGLT 85
Cdd:PRK09183    9 LMALCGQLQLESLISAAPALAQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAA--FPAvKTFEEYDFTFATGAP 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437  86 SDILQSFADCEWIKSKHNLIFTGATGIGKTWLASAFGTNACKLGFKVIFYNTTELFEDFNTAVNLGTI-STLKKRLLSCK 164
Cdd:PRK09183   87 QKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYkTTLQRGVMAPR 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437 165 LLILDDFGLSQINNSWLAHFISVIDKHSDNGSLLITSQYETNLWLNHF-EDQTVGEALLDRIVHRSHIFNLAGESMRKKR 243
Cdd:PRK09183  167 LLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTFaGDAALTSAMLDRLLHHSHVVQIKGESYRLKQ 246


                  ...
gi 1433328437 244 GKK 246
Cdd:PRK09183  247 KRK 249
PRK06526 PRK06526
transposase; Provisional
 67-242 1.91e-24

transposase; Provisional


Pssm-ID: 180607  Cd Length: 254  Bit Score: 97.63  E-value: 1.91e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437  67 RYPT-SSLTEIDCSNKKGLTSDILQSFADCEWIKSKHNLIFTGATGIGKTWLASAFGTNACKLGFKVIFYNTTELFEDFN 145
Cdd:PRK06526   63 RFPArKSLEEFDFDHQRSLKRDTIAHLGTLDFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLA 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437 146 TAVNLGTISTLKKRLLSCKLLILDDFGLSQINNSWLAHFISVIDKHSDNGSLLITSQYETNLWLNHFEDQTVGEALLDRI 225
Cdd:PRK06526  143 AAHHAGRLQAELVKLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRL 222

                         170
                  ....*....|....*..
gi 1433328437 226 VHRSHIFNLAGESMRKK 242
Cdd:PRK06526  223 VHHAEVISLKGDSYRLK 239
PRK08181 PRK08181
transposase; Validated
 97-242 1.46e-14

transposase; Validated


Pssm-ID: 136670 [Multi-domain]  Cd Length: 269  Bit Score: 71.11  E-value: 1.46e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437  97 WIKSKHNLIFTGATGIGKTWLASAFGTNACKLGFKVIFYNTTELFEDFNTAVNLGTISTLKKRLLSCKLLILDDFGLSQI 176
Cdd:PRK08181  102 WLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTK 181

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1433328437 177 NNSWLAHFISVIDKHSDNGSLLITSQYETNLWLNHFEDQTVGEALLDRIVHRSHIFNLAGESMRKK 242
Cdd:PRK08181  182 DQAETSVLFELISARYERRSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESYRRR 247
PRK06835 PRK06835
DNA replication protein DnaC; Validated
 99-246 5.34e-11

DNA replication protein DnaC; Validated


Pssm-ID: 235871 [Multi-domain]  Cd Length: 329  Bit Score: 61.45  E-value: 5.34e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437  99 KSKHNLIFTGATGIGKTWLASAFGTNACKLGFKVIFYNTTELFED-----FNTAVNLGTISTLkkrLLSCKLLILDDFGL 173
Cdd:PRK06835  181 KNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIlreirFNNDKELEEVYDL---LINCDLLIIDDLGT 257

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1433328437 174 SQINNSWLAHFISVIDKHSDNGSLLITSqyeTNLWLNHFEDqTVGEALLDRIVHRSHIFNLAGESMRKKRGKK 246
Cdd:PRK06835  258 EKITEFSKSELFNLINKRLLRQKKMIIS---TNLSLEELLK-TYSERISSRLLGNFTLLKFYGEDIRIKKNLQ 326
PRK08116 PRK08116
hypothetical protein; Validated
 96-246 1.20e-08

hypothetical protein; Validated


Pssm-ID: 236153 [Multi-domain]  Cd Length: 268  Bit Score: 54.26  E-value: 1.20e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437  96 EWIKSKHNLIFTGATGIGKTWLASAFGTNACKLGFKVIFYNTTELFED----FNTAVNLGTISTLKkRLLSCKLLILDDF 171
Cdd:PRK08116  109 EMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRikstYKSSGKEDENEIIR-SLVNADLLILDDL 187

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1433328437 172 GLSQiNNSW-LAHFISVIDKHSDNGSLLItsqYETNLWLNHFEDQtVGEALLDRIVHRSHIFNLAGESMRKKRGKK 246
Cdd:PRK08116  188 GAER-DTEWaREKVYNIIDSRYRKGLPTI---VTTNLSLEELKNQ-YGKRIYDRILEMCTPVENEGKSYRKEIAKE 258
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
 97-231 1.52e-06

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 46.76  E-value: 1.52e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437  97 WIKSKHNLIFTGATGIGKTWLASAFGTNACKLGFKVIFYNTTELFED--FNTAVNLGTISTLKKRLLSCK--LLILDDFG 172
Cdd:cd00009    15 ELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGlvVAELFGHFLVRLLFELAEKAKpgVLFIDEID 94

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1433328437 173 LSQINNSW-----LAHFISVIDKHSDNGSLLITsqyetnlwlNHFEDQTVGEALLDRIVHRSHI 231
Cdd:cd00009    95 SLSRGAQNallrvLETLNDLRIDRENVRVIGAT---------NRPLLGDLDRALYDRLDIRIVI 149
DnaA TIGR00362
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ...
 108-171 6.26e-04

chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273037 [Multi-domain]  Cd Length: 437  Bit Score: 40.59  E-value: 6.26e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1433328437 108 GATGIGKTWLASAFGTNACKLGFKV-IFYNTTELF-EDFNTAVNLGTISTLKKRLLSCKLLILDDF 171
Cdd:TIGR00362 144 GGVGLGKTHLLHAIGNEILENNPNAkVLYVSSEKFtNDFVNALRNNKMEEFKEKYRSVDLLLIDDI 209
Bac_DnaA pfam00308
Bacterial dnaA protein;
96-170 2.06e-03

Bacterial dnaA protein;


Pssm-ID: 278724 [Multi-domain]  Cd Length: 219  Bit Score: 38.46  E-value: 2.06e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1433328437  96 EWIKSKHN-LIFTGATGIGKTWLASAFGTNACKL--GFKVIFYNTTELFEDFNTAVNLGTISTLKKRLLSCKLLILDD 170
Cdd:pfam00308  28 KAPGKAYNpLFIYGGVGLGKTHLLHAIGNYALQNapNLRVVYLTAEEFLNDFVDAIRDNKTNQFKEKYRNVDVLLIDD 105
PRK12377 PRK12377
putative replication protein; Provisional
 90-241 5.03e-03

putative replication protein; Provisional


Pssm-ID: 183482 [Multi-domain]  Cd Length: 248  Bit Score: 37.12  E-value: 5.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437  90 QSFADcEWIKSKHNLIFTGATGIGKTWLASAFGTNACKLGFKVIFYNTTELFEDFNTAVNLG-TISTLKKRLLSCKLLIL 168
Cdd:PRK12377   91 KSIAD-ELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGqSGEKFLQELCKVDLLVL 169

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1433328437 169 DDFG-----------LSQINNSWLAHFISVidkhsdnGSLlitsqyeTNlwLNHFE-DQTVGEALLDRIVHRSHIF-NLA 235
Cdd:PRK12377  170 DEIGiqretkneqvvLNQIIDRRTASMRSV-------GML-------TN--LNHEAmSTLLGERVMDRMTMNGGRWvNFN 233


                  ....*.
gi 1433328437 236 GESMRK 241
Cdd:PRK12377  234 WESWRP 239
RecA-like_superfamily cd01120
RecA-like_NTPases; RecA-like NTPases. This superfamily includes the NTP binding domain of F1 ...
 104-135 8.02e-03

RecA-like_NTPases; RecA-like NTPases. This superfamily includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410865 [Multi-domain]  Cd Length: 119  Bit Score: 35.56  E-value: 8.02e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1433328437 104 LIFTGATGIGKTWLASAFGTNACKLGFKVIFY 135
Cdd:cd01120     1 ILITGPPGSGKTTLLLQFAEQALLSDEPVIFI 32
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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