|
Name |
Accession |
Description |
Interval |
E-value |
| TrmA |
COG2265 |
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure ... |
46-490 |
9.76e-144 |
|
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 441866 [Multi-domain] Cd Length: 377 Bit Score: 416.88 E-value: 9.76e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 46 QNFPLTIKRLGINGEGIGYFKRKIVFVPGALPDEVAVVKVTEVEPKYIAAKVLKIREKSPQRVKPLDEYADTVGGFELEH 125
Cdd:COG2265 1 EILELTIEDLAHGGDGVARHDGKVVFVPGALPGERVRVRVTKVKKSFARAKLVEVLEPSPDRVEPPCPHFGRCGGCQLQH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 126 MTYPAQLAFKKDVIAQALEKFQprGWTHYELRDTIGMDNPYDYRNKAQFPVRKIGDKLSVGMYKRGSHELVDLPVVHTQD 205
Cdd:COG2265 81 LSYEAQLELKQRVVREALERIG--GLPEVEVEPIIGSPEPWGYRNRARLSVRRTDGRLRLGFYARGSHELVDIDECPLLD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 206 PATMKVIRKVAELLDKLsvsiyneDKNRGTVKTIIARVshttgdvqltfvthtdgfpgdtaliaainqalpevvgifqny 285
Cdd:COG2265 159 PALNALLPALRELLAEL-------GARRGELRHLVVRA------------------------------------------ 189
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 286 npgrtslvwgeetlklwGRDTIEETILGKTFQLSPRAFMQLNHTQMTVAYEEALTALNLTHADKLVDAYAGVGTIGLTLA 365
Cdd:COG2265 190 -----------------GRDYLTERLGGLTFRISPGSFFQVNPEQAEALYAAALEWLDLTGGERVLDLYCGVGTFALPLA 252
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 366 DKAGEVRGMEIVPEAVDDANDNAARNNITNAHYEVGTAEALFPKWQAQGwVADALIVDPPRTGLDTALRREILRTKPEKF 445
Cdd:COG2265 253 RRAKKVIGVEIVPEAVEDARENARLNGLKNVEFVAGDLEEVLPELLWGG-RPDVVVLDPPRAGAGPEVLEALAALGPRRI 331
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1438183031 446 VYISCNASTLARDLVDLAQV-YQVDYIQSIDMFPQTARWEGVVKLT 490
Cdd:COG2265 332 VYVSCNPATLARDLALLVEGgYRLEKVQPVDMFPHTHHVESVALLE 377
|
|
| rumA |
TIGR00479 |
23S rRNA (uracil-5-)-methyltransferase RumA; This protein family was first proposed to be RNA ... |
55-484 |
6.18e-142 |
|
23S rRNA (uracil-5-)-methyltransferase RumA; This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 129571 [Multi-domain] Cd Length: 431 Bit Score: 414.60 E-value: 6.18e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 55 LGINGEGIGYFKRKIVFVPGALPDEVAVVKVTEVEPKYIAAKVLKIREKSPQRVKPLDEYADTVGGFELEHMTYPAQLAF 134
Cdd:TIGR00479 1 LDHQGEGVARFNGKTVFVPGALPGEKAEVRVTEVKKQYARARVKKILEDSPERTTPPCPHFGQCGGCQLQHLSYELQLRS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 135 KKDVIAQALEKFQPRGWTHYELRDTIGmDNPYDYRNKAQFPV-RKIGDKLSVGMYKRGSHELVDLPVVHTQDPATMKVIR 213
Cdd:TIGR00479 81 KQQQVIALLERIGKFVSEPIEDVPTIG-DDPWGYRNKARLSLgRSPSGQLQAGFYQKGSHDIVDVKQCPVQAPALNALLP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 214 KVAELLDKLSVSIYNEDKNRGTVKTIIARVSHTTGDVQLTFVTHTDGFPGDTALIAAINQALPEVVGIFQNYNPGRTSLV 293
Cdd:TIGR00479 160 KVRAILENFGASRYLEHKELGQARHGVLRIGRHTGELSSVDRTALERFPHKEELDLYLQPDSPDVKSICQNINPEKTNVI 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 294 WGEETLKLWGRDTIEETILGKTFQLSPRAFMQLNHTQMTVAYEEALTALNLTHADKLVDAYAGVGTIGLTLADKAGEVRG 373
Cdd:TIGR00479 240 FGEETEVIAGEMPIYDKSGDLSFTFSARDFIQVNSGQNEKLVDRALEWLELQGEERVLDAYCGMGTFTLPLAKQAKSVVG 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 374 MEIVPEAVDDANDNAARNNITNAHYEVGTAEALFPKWQAQGWVADALIVDPPRTGLDTALRREILRTKPEKFVYISCNAS 453
Cdd:TIGR00479 320 VEGVPESVEKAQQNAELNGIANVTFYHGTLETVLPKQPWAGNGFDKVLLDPPRKGCAAGVLRTIIKLKPERIVYVSCNPA 399
|
410 420 430
....*....|....*....|....*....|..
gi 1438183031 454 TLARDL-VDLAQVYQVDYIQSIDMFPQTARWE 484
Cdd:TIGR00479 400 TLARDLeALCKAGYTIARVQPVDMFPHTGHVE 431
|
|
| rumA |
PRK13168 |
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD; |
46-481 |
7.19e-61 |
|
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD;
Pssm-ID: 237291 [Multi-domain] Cd Length: 443 Bit Score: 205.78 E-value: 7.19e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 46 QNFPLTIKRLGINGEGIGYFKRKIVFVPGALPDEVAVVKVTEVEPKYIAAKVLKIREKSPQRVKPLDEYADTVGGFELEH 125
Cdd:PRK13168 14 QIITVTIESLDHDGRGVARHNGKTVFIEGALPGERVEVQVTEDKKQYARAKVVRILKPSPERVTPRCPHFGVCGGCQLQH 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 126 MTYPAQLAFKKDVIAQALEKFQprGWTHYELRDTIgMDNPYDYRNKAQFPVR--KIGDKLSVGMYKRGSHELVDLPVVHT 203
Cdd:PRK13168 94 LSIDAQIASKQRALEDLLKHLA--GVEPEEVLPPI-AGPPWGYRRRARLSVRyvPKKGQLLVGFREKNSSDIVDIDQCPV 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 204 QDPATMKVIRKVAELLDKLSvsiynedknrgtvktIIARVSH---TTGDvQLTFVT--HTDGFP-GDTALIAAINQAlpe 277
Cdd:PRK13168 171 LVPPLSALLPPLRALLSSLS---------------AKRRLGHvelAQGD-NGTALVlrHLEPLSeADRAKLRAFAEQ--- 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 278 vvgifQNYNpgrtslVW----GEETLKLWGRDTIEET----ILGKTFQLSPRAFMQLNHT---QMtVAYeeALTALNLTH 346
Cdd:PRK13168 232 -----HGLQ------LYlqpkGPDLVHLLGPADAQLSyylpEFGLRLAFSPRDFIQVNAQvnqKM-VAR--ALEWLDPQP 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 347 ADKLVDAYAGVGTIGLTLADKAGEVRGMEIVPEAVDDANDNAARNNITNAHYEVGTAEALFPK--WQAQGwvADALIVDP 424
Cdd:PRK13168 298 GDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDqpWALGG--FDKVLLDP 375
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1438183031 425 PRTGldtALrrEILR----TKPEKFVYISCNASTLARD---LVdlAQVYQVDYIQSIDMFPQTA 481
Cdd:PRK13168 376 PRAG---AA--EVMQalakLGPKRIVYVSCNPATLARDagvLV--EAGYRLKRAGMLDMFPHTG 432
|
|
| tRNA_U5-meth_tr |
pfam05958 |
tRNA (Uracil-5-)-methyltransferase; This family consists of (Uracil-5-)-methyltransferases EC: ... |
127-492 |
1.43e-16 |
|
tRNA (Uracil-5-)-methyltransferase; This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalyzed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Pssm-ID: 428692 Cd Length: 357 Bit Score: 80.95 E-value: 1.43e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 127 TYPAQLAFKKDVIAQALEKFQPRGWTHYELRDTigmdnpyDYRNKAQFPVRKIGDKLSVGMYKRGSHELVdlpVVHTQDP 206
Cdd:pfam05958 1 QYDAQLAEKKSRLKALFAPFYAPDPEVFASPDK-------HYRMRAEFRIWHEGDDLYYAMFDQQTKSRI---RVDQFPA 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 207 ATmkviRKVAELLDKLSVSIYNEDKNRGTVKTIiARVSHTTGDVQLTFVTHTDgfPGDTALIAAINQALPEVVGIFQNYN 286
Cdd:pfam05958 71 AS----ELINELMPALIAALRQDPALRHKLFQV-DFLTTLSGEALVSLLYHKQ--LDDEWRQAAEALRDALRAQGLDVNL 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 287 PGR---TSLVWG----EETLKLWGRDTIEETILGktfqlsprAFMQLNHTQMTVAYEEALTALNLTHADkLVDAYAGVGT 359
Cdd:pfam05958 144 IGRarkQKIVLDqdyvDETLPVAGREFIYRQVEN--------SFTQPNAAVNIKMLEWACDVTQGSKGD-LLELYCGNGN 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 360 IGLTLADKAGEVRGMEIVPEAVDDANDNAARNNITNAHYEVGTAEAL---------FPKWQA---QGWVADALIVDPPRT 427
Cdd:pfam05958 215 FSLALARNFRKVLATEIAKPSVAAAQYNIAANNIDNVQIIRMSAEEFtqamngvreFNRLKGidlKSYNCSTIFVDPPRA 294
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1438183031 428 GLDTALrrEILRTKPEKFVYISCNASTLARDLVDLAQVYQVDYIQSIDMFPQTARWEGVVKLTKR 492
Cdd:pfam05958 295 GLDPET--LKLVQAYPRILYISCNPETLCANLEQLSKTHRVERFALFDQFPYTHHMECGVLLEKK 357
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| TrmA |
COG2265 |
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure ... |
46-490 |
9.76e-144 |
|
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 441866 [Multi-domain] Cd Length: 377 Bit Score: 416.88 E-value: 9.76e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 46 QNFPLTIKRLGINGEGIGYFKRKIVFVPGALPDEVAVVKVTEVEPKYIAAKVLKIREKSPQRVKPLDEYADTVGGFELEH 125
Cdd:COG2265 1 EILELTIEDLAHGGDGVARHDGKVVFVPGALPGERVRVRVTKVKKSFARAKLVEVLEPSPDRVEPPCPHFGRCGGCQLQH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 126 MTYPAQLAFKKDVIAQALEKFQprGWTHYELRDTIGMDNPYDYRNKAQFPVRKIGDKLSVGMYKRGSHELVDLPVVHTQD 205
Cdd:COG2265 81 LSYEAQLELKQRVVREALERIG--GLPEVEVEPIIGSPEPWGYRNRARLSVRRTDGRLRLGFYARGSHELVDIDECPLLD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 206 PATMKVIRKVAELLDKLsvsiyneDKNRGTVKTIIARVshttgdvqltfvthtdgfpgdtaliaainqalpevvgifqny 285
Cdd:COG2265 159 PALNALLPALRELLAEL-------GARRGELRHLVVRA------------------------------------------ 189
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 286 npgrtslvwgeetlklwGRDTIEETILGKTFQLSPRAFMQLNHTQMTVAYEEALTALNLTHADKLVDAYAGVGTIGLTLA 365
Cdd:COG2265 190 -----------------GRDYLTERLGGLTFRISPGSFFQVNPEQAEALYAAALEWLDLTGGERVLDLYCGVGTFALPLA 252
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 366 DKAGEVRGMEIVPEAVDDANDNAARNNITNAHYEVGTAEALFPKWQAQGwVADALIVDPPRTGLDTALRREILRTKPEKF 445
Cdd:COG2265 253 RRAKKVIGVEIVPEAVEDARENARLNGLKNVEFVAGDLEEVLPELLWGG-RPDVVVLDPPRAGAGPEVLEALAALGPRRI 331
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1438183031 446 VYISCNASTLARDLVDLAQV-YQVDYIQSIDMFPQTARWEGVVKLT 490
Cdd:COG2265 332 VYVSCNPATLARDLALLVEGgYRLEKVQPVDMFPHTHHVESVALLE 377
|
|
| rumA |
TIGR00479 |
23S rRNA (uracil-5-)-methyltransferase RumA; This protein family was first proposed to be RNA ... |
55-484 |
6.18e-142 |
|
23S rRNA (uracil-5-)-methyltransferase RumA; This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 129571 [Multi-domain] Cd Length: 431 Bit Score: 414.60 E-value: 6.18e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 55 LGINGEGIGYFKRKIVFVPGALPDEVAVVKVTEVEPKYIAAKVLKIREKSPQRVKPLDEYADTVGGFELEHMTYPAQLAF 134
Cdd:TIGR00479 1 LDHQGEGVARFNGKTVFVPGALPGEKAEVRVTEVKKQYARARVKKILEDSPERTTPPCPHFGQCGGCQLQHLSYELQLRS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 135 KKDVIAQALEKFQPRGWTHYELRDTIGmDNPYDYRNKAQFPV-RKIGDKLSVGMYKRGSHELVDLPVVHTQDPATMKVIR 213
Cdd:TIGR00479 81 KQQQVIALLERIGKFVSEPIEDVPTIG-DDPWGYRNKARLSLgRSPSGQLQAGFYQKGSHDIVDVKQCPVQAPALNALLP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 214 KVAELLDKLSVSIYNEDKNRGTVKTIIARVSHTTGDVQLTFVTHTDGFPGDTALIAAINQALPEVVGIFQNYNPGRTSLV 293
Cdd:TIGR00479 160 KVRAILENFGASRYLEHKELGQARHGVLRIGRHTGELSSVDRTALERFPHKEELDLYLQPDSPDVKSICQNINPEKTNVI 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 294 WGEETLKLWGRDTIEETILGKTFQLSPRAFMQLNHTQMTVAYEEALTALNLTHADKLVDAYAGVGTIGLTLADKAGEVRG 373
Cdd:TIGR00479 240 FGEETEVIAGEMPIYDKSGDLSFTFSARDFIQVNSGQNEKLVDRALEWLELQGEERVLDAYCGMGTFTLPLAKQAKSVVG 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 374 MEIVPEAVDDANDNAARNNITNAHYEVGTAEALFPKWQAQGWVADALIVDPPRTGLDTALRREILRTKPEKFVYISCNAS 453
Cdd:TIGR00479 320 VEGVPESVEKAQQNAELNGIANVTFYHGTLETVLPKQPWAGNGFDKVLLDPPRKGCAAGVLRTIIKLKPERIVYVSCNPA 399
|
410 420 430
....*....|....*....|....*....|..
gi 1438183031 454 TLARDL-VDLAQVYQVDYIQSIDMFPQTARWE 484
Cdd:TIGR00479 400 TLARDLeALCKAGYTIARVQPVDMFPHTGHVE 431
|
|
| rumA |
PRK13168 |
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD; |
46-481 |
7.19e-61 |
|
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD;
Pssm-ID: 237291 [Multi-domain] Cd Length: 443 Bit Score: 205.78 E-value: 7.19e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 46 QNFPLTIKRLGINGEGIGYFKRKIVFVPGALPDEVAVVKVTEVEPKYIAAKVLKIREKSPQRVKPLDEYADTVGGFELEH 125
Cdd:PRK13168 14 QIITVTIESLDHDGRGVARHNGKTVFIEGALPGERVEVQVTEDKKQYARAKVVRILKPSPERVTPRCPHFGVCGGCQLQH 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 126 MTYPAQLAFKKDVIAQALEKFQprGWTHYELRDTIgMDNPYDYRNKAQFPVR--KIGDKLSVGMYKRGSHELVDLPVVHT 203
Cdd:PRK13168 94 LSIDAQIASKQRALEDLLKHLA--GVEPEEVLPPI-AGPPWGYRRRARLSVRyvPKKGQLLVGFREKNSSDIVDIDQCPV 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 204 QDPATMKVIRKVAELLDKLSvsiynedknrgtvktIIARVSH---TTGDvQLTFVT--HTDGFP-GDTALIAAINQAlpe 277
Cdd:PRK13168 171 LVPPLSALLPPLRALLSSLS---------------AKRRLGHvelAQGD-NGTALVlrHLEPLSeADRAKLRAFAEQ--- 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 278 vvgifQNYNpgrtslVW----GEETLKLWGRDTIEET----ILGKTFQLSPRAFMQLNHT---QMtVAYeeALTALNLTH 346
Cdd:PRK13168 232 -----HGLQ------LYlqpkGPDLVHLLGPADAQLSyylpEFGLRLAFSPRDFIQVNAQvnqKM-VAR--ALEWLDPQP 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 347 ADKLVDAYAGVGTIGLTLADKAGEVRGMEIVPEAVDDANDNAARNNITNAHYEVGTAEALFPK--WQAQGwvADALIVDP 424
Cdd:PRK13168 298 GDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDqpWALGG--FDKVLLDP 375
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1438183031 425 PRTGldtALrrEILR----TKPEKFVYISCNASTLARD---LVdlAQVYQVDYIQSIDMFPQTA 481
Cdd:PRK13168 376 PRAG---AA--EVMQalakLGPKRIVYVSCNPATLARDagvLV--EAGYRLKRAGMLDMFPHTG 432
|
|
| rumB |
PRK03522 |
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC; |
227-492 |
3.80e-37 |
|
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC;
Pssm-ID: 235128 [Multi-domain] Cd Length: 315 Bit Score: 138.85 E-value: 3.80e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 227 YNEDKNRGTVKTIIARVSHTTGDVQLTFVTHTDgfpgdtALIAAINQALPE---------VVGIfqNYNPGRTSLVWGEE 297
Cdd:PRK03522 53 YNVARKRGELKYILLTESQSDGELMLRFVLRSE------TKLARLRRALPWlqaqlpqlkVISV--NIQPVHMAILEGEE 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 298 TLKLWGRDTIEETILGKTFQLSPRAFMQLNhTQMTVA-YEEA---LTALNLTHadkLVDAYAGVGTIGLTLADKAGEVRG 373
Cdd:PRK03522 125 EIFLTEQQALPERFNGVPLFIRPQSFFQTN-PAVAAQlYATArdwVRELPPRS---MWDLFCGVGGFGLHCATPGMQLTG 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 374 MEIVPEAVDDANDNAARNNITNAHYEVGTAEAlFPkwQAQGWVADALIVDPPRTGLDTALRREILRTKPEKFVYISCNAS 453
Cdd:PRK03522 201 IEISAEAIACAKQSAAELGLTNVQFQALDSTQ-FA--TAQGEVPDLVLVNPPRRGIGKELCDYLSQMAPRFILYSSCNAQ 277
|
250 260 270
....*....|....*....|....*....|....*....
gi 1438183031 454 TLARDLVDLAQvYQVDYIQSIDMFPQTARWEGVVKLTKR 492
Cdd:PRK03522 278 TMAKDLAHLPG-YRIERVQLFDMFPHTAHYEVLTLLVRQ 315
|
|
| meth_trns_rumB |
TIGR02085 |
23S rRNA (uracil-5-)-methyltransferase RumB; This family consists of RNA methyltransferases ... |
168-491 |
5.98e-30 |
|
23S rRNA (uracil-5-)-methyltransferase RumB; This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 131140 Cd Length: 374 Bit Score: 120.33 E-value: 5.98e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 168 YRNKAQFPVRKIGDKLSVGMYKRGSH--ELVDLPVVhtqdPATMKVIRKVAE-LLDKLSVSIYNEDKNRGTVKTIIARVS 244
Cdd:TIGR02085 55 FRNKAKMVVSGSVERPILGILHRDGTplDLCDCPLY----PQSFQPVFAYLKnFIARAGLTPYNVAKKKGELKFILLTES 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 245 HTTGDVQLTFVTHTDG-FPGDTALIAAINQALPEVVGIFQNYNPGRTSLVWGEETLKLWGRDTIEETILGKTFQLSPRAF 323
Cdd:TIGR02085 131 ENSGQLMLRFVLRSETkLAQIRRALPWLIEQLPQLEVISVNIQPVHMAILEGEEEIFLTEQQALPERFNDVPLVIRPQSF 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 324 MQLNHTQMTVAYEEALTALNLTHADKLVDAYAGVGTIGLTLADKAGEVRGMEIVPEAVDDANDNAARNNITNAHYEVGTA 403
Cdd:TIGR02085 211 FQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 404 EALFpkwQAQGWVADALIVDPPRTGLDTALRREILRTKPEKFVYISCNASTLARDLVDLAQvYQVDYIQSIDMFPQTARW 483
Cdd:TIGR02085 291 AKFA---TAQMSAPELVLVNPPRRGIGKELCDYLSQMAPKFILYSSCNAQTMAKDIAELSG-YQIERVQLFDMFPHTSHY 366
|
....*...
gi 1438183031 484 EGVVKLTK 491
Cdd:TIGR02085 367 EVLTLLVR 374
|
|
| tRNA_U5-meth_tr |
pfam05958 |
tRNA (Uracil-5-)-methyltransferase; This family consists of (Uracil-5-)-methyltransferases EC: ... |
127-492 |
1.43e-16 |
|
tRNA (Uracil-5-)-methyltransferase; This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalyzed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Pssm-ID: 428692 Cd Length: 357 Bit Score: 80.95 E-value: 1.43e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 127 TYPAQLAFKKDVIAQALEKFQPRGWTHYELRDTigmdnpyDYRNKAQFPVRKIGDKLSVGMYKRGSHELVdlpVVHTQDP 206
Cdd:pfam05958 1 QYDAQLAEKKSRLKALFAPFYAPDPEVFASPDK-------HYRMRAEFRIWHEGDDLYYAMFDQQTKSRI---RVDQFPA 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 207 ATmkviRKVAELLDKLSVSIYNEDKNRGTVKTIiARVSHTTGDVQLTFVTHTDgfPGDTALIAAINQALPEVVGIFQNYN 286
Cdd:pfam05958 71 AS----ELINELMPALIAALRQDPALRHKLFQV-DFLTTLSGEALVSLLYHKQ--LDDEWRQAAEALRDALRAQGLDVNL 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 287 PGR---TSLVWG----EETLKLWGRDTIEETILGktfqlsprAFMQLNHTQMTVAYEEALTALNLTHADkLVDAYAGVGT 359
Cdd:pfam05958 144 IGRarkQKIVLDqdyvDETLPVAGREFIYRQVEN--------SFTQPNAAVNIKMLEWACDVTQGSKGD-LLELYCGNGN 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 360 IGLTLADKAGEVRGMEIVPEAVDDANDNAARNNITNAHYEVGTAEAL---------FPKWQA---QGWVADALIVDPPRT 427
Cdd:pfam05958 215 FSLALARNFRKVLATEIAKPSVAAAQYNIAANNIDNVQIIRMSAEEFtqamngvreFNRLKGidlKSYNCSTIFVDPPRA 294
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1438183031 428 GLDTALrrEILRTKPEKFVYISCNASTLARDLVDLAQVYQVDYIQSIDMFPQTARWEGVVKLTKR 492
Cdd:pfam05958 295 GLDPET--LKLVQAYPRILYISCNPETLCANLEQLSKTHRVERFALFDQFPYTHHMECGVLLEKK 357
|
|
| PRK05031 |
PRK05031 |
tRNA (uracil-5-)-methyltransferase; Validated |
123-492 |
1.12e-13 |
|
tRNA (uracil-5-)-methyltransferase; Validated
Pssm-ID: 235332 Cd Length: 362 Bit Score: 72.17 E-value: 1.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 123 LEHMTYPAQLAFKKDVIAQALEKFQPRGWTHYElrdtigmDNPYDYRNKAQFPVRKIGDKLSVGMYKRGSHELVdlpVVH 202
Cdd:PRK05031 6 LPPEQYEAQLAEKVARLKELFAPFSAPEPEVFR-------SPPSHYRMRAEFRIWHEGDDLYYAMFDQQTKQRI---RID 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 203 TQDPATMKVIRKVAELLDKLsvsiynedKNRGTVKTIIARV---SHTTGDVQLTFVTHTdgfPGDTALIAAIN---QALP 276
Cdd:PRK05031 76 QFPIASELINALMPALLAAL--------RANPVLRHKLFQVdflSTLSGEILVSLLYHK---KLDEEWEQAAKalrDALF 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 277 EVVGIfqnynpGR---TSLVWGeetlklwgRDTIEET--ILGKTF--QLSPRAFMQLN---HTQMTvayEEALTALNLTH 346
Cdd:PRK05031 145 NVHLI------GRsrkQKIVLD--------QDYVDERlpVAGREFiyRQVENSFTQPNaavNEKML---EWALDATKGSK 207
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 347 ADkLVDAYAGVGTIGLTLADKAGEVRGMEIVPEAVDDANDNAARNNITNAHYEVGTAE----AL-----FPKWQA---QG 414
Cdd:PRK05031 208 GD-LLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEeftqAMngvreFNRLKGidlKS 286
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1438183031 415 WVADALIVDPPRTGLDTALRReiLRTKPEKFVYISCNASTLARDLVDLAQVYQVDYIQSIDMFPQTARWEGVVKLTKR 492
Cdd:PRK05031 287 YNFSTIFVDPPRAGLDDETLK--LVQAYERILYISCNPETLCENLETLSQTHKVERFALFDQFPYTHHMECGVLLEKK 362
|
|
| TRAM |
pfam01938 |
TRAM domain; This small domain has no known function. However it may perform a nucleic acid ... |
42-98 |
7.50e-11 |
|
TRAM domain; This small domain has no known function. However it may perform a nucleic acid binding role (Bateman A. unpublished observation).
Pssm-ID: 396497 [Multi-domain] Cd Length: 59 Bit Score: 57.61 E-value: 7.50e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 1438183031 42 VRVGQNFPLTIKRLGINGEGIGYFKR-KIVFVPGALPDEVAVVKVTEVEPKYIAAKVL 98
Cdd:pfam01938 2 RYVGQTQEVLVEGLSSNGEGIGRTDNgKVVFVPGALPGEFVEVKITKVKRNYLRGELL 59
|
|
| COG3269 |
COG3269 |
Predicted RNA-binding protein, contains TRAM domain [General function prediction only]; |
42-98 |
4.28e-07 |
|
Predicted RNA-binding protein, contains TRAM domain [General function prediction only];
Pssm-ID: 442500 [Multi-domain] Cd Length: 129 Bit Score: 48.90 E-value: 4.28e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1438183031 42 VRVGQNFPLTIKRLGINGEGIGYFKRKIVFVPGALPDEVAVVKVTEVEPKYIAAKVL 98
Cdd:COG3269 70 VEEGEEYEVEIEDIGKKGDGIARVEGFVIFVPGAEVGDRVKVKITKVKRNFAFAEVV 126
|
|
| PRK14968 |
PRK14968 |
putative methyltransferase; Provisional |
348-400 |
9.34e-05 |
|
putative methyltransferase; Provisional
Pssm-ID: 237872 [Multi-domain] Cd Length: 188 Bit Score: 43.35 E-value: 9.34e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1438183031 348 DKLVDAYAGVGTIGLTLADKAGEVRGMEIVPEAVDDANDNAARNNITNAHYEV 400
Cdd:PRK14968 25 DRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEV 77
|
|
| PRK09328 |
PRK09328 |
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional |
336-397 |
7.79e-04 |
|
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Pssm-ID: 236467 [Multi-domain] Cd Length: 275 Bit Score: 41.30 E-value: 7.79e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1438183031 336 EEALTALNLTHADKLVDAYAGVGTIGLTLADKAGEVRGM--EIVPEAVDDANDNAARNNITNAH 397
Cdd:PRK09328 98 EWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTavDISPEALAVARRNAKHGLGARVE 161
|
|
| TrmN6 |
COG4123 |
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) ... |
341-395 |
8.94e-04 |
|
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) A37 N6-methylase TrmN6 is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 443299 [Multi-domain] Cd Length: 238 Bit Score: 40.90 E-value: 8.94e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1438183031 341 ALNLTHADKLVDAYAGVGTIGLTLADKAGEVR--GMEIVPEAVDDANDNAARNNITN 395
Cdd:COG4123 32 FAPVKKGGRVLDLGTGTGVIALMLAQRSPGARitGVEIQPEAAELARRNVALNGLED 88
|
|
| Methyltransf_31 |
pfam13847 |
Methyltransferase domain; This family appears to have methyltransferase activity. |
347-406 |
1.67e-03 |
|
Methyltransferase domain; This family appears to have methyltransferase activity.
Pssm-ID: 463998 [Multi-domain] Cd Length: 150 Bit Score: 38.94 E-value: 1.67e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1438183031 347 ADKLVDAYAGVGTIGLTLADKAG---EVRGMEIVPEAVDDANDNAARNNITNAHYEVGTAEAL 406
Cdd:pfam13847 4 GMRVLDLGCGTGHLSFELAEELGpnaEVVGIDISEEAIEKARENAQKLGFDNVEFEQGDIEEL 66
|
|
| RsmC |
COG2813 |
16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA ... |
339-397 |
3.30e-03 |
|
16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA G1207 methylase RsmC is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 442062 [Multi-domain] Cd Length: 191 Bit Score: 38.63 E-value: 3.30e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1438183031 339 LTALNLTHADKLVDAYAGVGTIGLTLADKAGEVR--GMEIVPEAVDDANDNAARNNITNAH 397
Cdd:COG2813 42 LEHLPEPLGGRVLDLGCGYGVIGLALAKRNPEARvtLVDVNARAVELARANAAANGLENVE 102
|
|
| MTS |
pfam05175 |
Methyltransferase small domain; This domain is found in ribosomal RNA small subunit ... |
339-443 |
4.52e-03 |
|
Methyltransferase small domain; This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.
Pssm-ID: 428349 [Multi-domain] Cd Length: 170 Bit Score: 37.96 E-value: 4.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1438183031 339 LTALNLTHADKLVDAYAGVGTIGLTLADKAGEVR--GMEIVPEAVDDANDNAARNNITNAHYEVGTA-EALFPKwqaqgw 415
Cdd:pfam05175 24 LEHLPKDLSGKVLDLGCGAGVLGAALAKESPDAEltMVDINARALESARENLAANGLENGEVVASDVySGVEDG------ 97
|
90 100 110
....*....|....*....|....*....|.
gi 1438183031 416 VADALIVDPP-RTGLDTALR--REILRTKPE 443
Cdd:pfam05175 98 KFDLIISNPPfHAGLATTYNvaQRFIADAKR 128
|
|
|