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Conserved domains on  [gi|1441215201|ref|WP_114840326|]
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c-type cytochrome [Halarcobacter bivalviorum]

Protein Classification

c-type cytochrome( domain architecture ID 10006741)

c-type cytochrome is an electron carrier protein that contains one or more heme groups; similar to Helicobacter pylori cytochrome c-553 that binds 1 heme and functions as the natural electron acceptor for a formate dehydrogenase

CATH:  1.10.760.10
Gene Ontology:  GO:0020037|GO:0009055|GO:0046872
PubMed:  31252007|22723177|18568041|12594933|10647174|10395550
SCOP:  3000815

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
17-94 4.67e-22

Cytochrome c553 [Energy production and conversion];


:

Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 82.08  E-value: 4.67e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1441215201 17 AVEYDALQGKMLSLSCASCHGTDGKSTT--ITPYIAGMGKTIMYQTLLDYKNGKRTGTMMQKHVKGFTDAELEQISYYFS 94
Cdd:COG2863   10 AAAGDAARGKAYAAACAACHGADGEGNPggGAPRLAGQHAEYLVAQLKAFRSGARKNGVMPAIAKGLSDEDIKALAAYIA 89
 
Name Accession Description Interval E-value
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
17-94 4.67e-22

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 82.08  E-value: 4.67e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1441215201 17 AVEYDALQGKMLSLSCASCHGTDGKSTT--ITPYIAGMGKTIMYQTLLDYKNGKRTGTMMQKHVKGFTDAELEQISYYFS 94
Cdd:COG2863   10 AAAGDAARGKAYAAACAACHGADGEGNPggGAPRLAGQHAEYLVAQLKAFRSGARKNGVMPAIAKGLSDEDIKALAAYIA 89
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 32-92 7.00e-04

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 35.59  E-value: 7.00e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1441215201 32 CASCHGTDGKSTTIT-PYIAGMGKTIMYQTLLDYKNGKR-------------TGTMMqKHVKGFTDAELEQISYY 92
Cdd:pfam00034 11 CAACHGVNGEGAGAGgPDLAGLAARYPGDALGAIRENKHaiggggvdraggpPGTGM-PAFDGLTDEEIADLVAY 84
 
Name Accession Description Interval E-value
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
17-94 4.67e-22

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 82.08  E-value: 4.67e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1441215201 17 AVEYDALQGKMLSLSCASCHGTDGKSTT--ITPYIAGMGKTIMYQTLLDYKNGKRTGTMMQKHVKGFTDAELEQISYYFS 94
Cdd:COG2863   10 AAAGDAARGKAYAAACAACHGADGEGNPggGAPRLAGQHAEYLVAQLKAFRSGARKNGVMPAIAKGLSDEDIKALAAYIA 89
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
17-92 1.53e-05

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 41.09  E-value: 1.53e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1441215201  17 AVEYDALQGKML-SLSCASCHGTDGKSTT------ITPYIAGMGKTIMYQTLLdykNGkRTGTMMQKHVKGFTDAELEQI 89
Cdd:COG2010    84 ADAEALARGKALyEQNCAACHGADGKGGLgaapnlTDDALYGGDPEALVETIL---NG-RPGGAMPAFGGQLSDEEIAAL 159


                  ...
gi 1441215201  90 SYY 92
Cdd:COG2010   160 AAY 162
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 32-92 7.00e-04

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 35.59  E-value: 7.00e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1441215201 32 CASCHGTDGKSTTIT-PYIAGMGKTIMYQTLLDYKNGKR-------------TGTMMqKHVKGFTDAELEQISYY 92
Cdd:pfam00034 11 CAACHGVNGEGAGAGgPDLAGLAARYPGDALGAIRENKHaiggggvdraggpPGTGM-PAFDGLTDEEIADLVAY 84
TsdA COG3258
Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion ...
 1-93 4.10e-03

Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion transport and metabolism];


Pssm-ID: 442489 [Multi-domain]  Cd Length: 216  Bit Score: 34.44  E-value: 4.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1441215201   1 MKKFIIALFCLcsfsyaveydALQGKML---SLSCASCHGTDGKS--TTITPYIAGMGKTIMYQTLLDYKNGKRTGTMMQ 75
Cdd:COG3258     1 MRKLALLAAAA----------ARRGEELftnGLSCASCHLDAGTKpwGVAAAYPAYRARNGKVVTLEDRINGCFTRSMNG 70

                          90
                  ....*....|....*...
gi 1441215201  76 KhVKGFTDAELEQISYYF 93
Cdd:COG3258    71 K-PLPLDSAEMKALVAYL 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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