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Conserved domains on  [gi|1444982549|ref|WP_115598461|]
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DUF3263 domain-containing protein [Corynebacterium amycolatum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3263 super family cl13162
Protein of unknown function (DUF3263); This family of proteins with unknown function appears ...
 46-111 2.59e-13

Protein of unknown function (DUF3263); This family of proteins with unknown function appears to be restricted to Actinobacteria.


The actual alignment was detected with superfamily member pfam11662:

Pssm-ID: 431988  Cd Length: 74  Bit Score: 59.89  E-value: 2.59e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1444982549  46 EKEWLKVARRGPRMAGARQEAIRrrfaEEFDNNTIRYHQVLSRLLDSPAAEAAEPVLVHRLRAVRD 111
Cdd:pfam11662   6 DRAILAFERQWWRHAGAKEQAIR----ERFGLSPTRYYQLLNALIDDPAALAADPVLVKRLRRLRA 67
 
Name Accession Description Interval E-value
DUF3263 pfam11662
Protein of unknown function (DUF3263); This family of proteins with unknown function appears ...
 46-111 2.59e-13

Protein of unknown function (DUF3263); This family of proteins with unknown function appears to be restricted to Actinobacteria.


Pssm-ID: 431988  Cd Length: 74  Bit Score: 59.89  E-value: 2.59e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1444982549  46 EKEWLKVARRGPRMAGARQEAIRrrfaEEFDNNTIRYHQVLSRLLDSPAAEAAEPVLVHRLRAVRD 111
Cdd:pfam11662   6 DRAILAFERQWWRHAGAKEQAIR----ERFGLSPTRYYQLLNALIDDPAALAADPVLVKRLRRLRA 67
 
Name Accession Description Interval E-value
DUF3263 pfam11662
Protein of unknown function (DUF3263); This family of proteins with unknown function appears ...
 46-111 2.59e-13

Protein of unknown function (DUF3263); This family of proteins with unknown function appears to be restricted to Actinobacteria.


Pssm-ID: 431988  Cd Length: 74  Bit Score: 59.89  E-value: 2.59e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1444982549  46 EKEWLKVARRGPRMAGARQEAIRrrfaEEFDNNTIRYHQVLSRLLDSPAAEAAEPVLVHRLRAVRD 111
Cdd:pfam11662   6 DRAILAFERQWWRHAGAKEQAIR----ERFGLSPTRYYQLLNALIDDPAALAADPVLVKRLRRLRA 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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