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Conserved domains on  [gi|1468017711|ref|WP_117093716|]
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PTS fructose-like transporter subunit IIB [Klebsiella pneumoniae]

Protein Classification

PTS sugar transporter subunit IIB( domain architecture ID 1527)

PTS sugar transporter subunit IIB is part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active transport system that catalyzes the phosphorylation of incoming substrates (such as ascorbate, lactose, galactitol) concomitantly with their translocation across the cell membrane

CATH:  3.40.50.2300
EC:  2.7.1.-
Gene Ontology:  GO:0008643|GO:0009401|GO:0008982
PubMed:  8246840|2197982

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTS_IIB super family cl10014
PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the ...
 1-113 3.44e-63

PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby regulating their activity.


The actual alignment was detected with superfamily member PRK10427:

Pssm-ID: 447878  Cd Length: 114  Bit Score: 187.36  E-value: 3.44e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468017711   1 MDFNIVAVTACVSGVAHTYMAAERLETVGHHEKWHLKVETQGALGVENRITAEDIARAEVVLLVTDIEIDDPHRFRGLRT 80
Cdd:PRK10427    1 MMAYLVAVTACVSGVAHTYMAAERLEKLCQLEKWGVKIETQGALGTENRLTDEDIRRADVVLLITDIELAGAERFEHCRY 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1468017711  81 IKTSIKSFLLQPQQIVEAVKSIMKKP-VVYVELP 113
Cdd:PRK10427   81 VQCSIYAFLREPQRVMSAVRKVLSAPqQTHLILE 114
 
Name Accession Description Interval E-value
PRK10427 PRK10427
PTS fructose-like transporter subunit IIB;
1-113 3.44e-63

PTS fructose-like transporter subunit IIB;


Pssm-ID: 182451  Cd Length: 114  Bit Score: 187.36  E-value: 3.44e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468017711   1 MDFNIVAVTACVSGVAHTYMAAERLETVGHHEKWHLKVETQGALGVENRITAEDIARAEVVLLVTDIEIDDPHRFRGLRT 80
Cdd:PRK10427    1 MMAYLVAVTACVSGVAHTYMAAERLEKLCQLEKWGVKIETQGALGTENRLTDEDIRRADVVLLITDIELAGAERFEHCRY 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1468017711  81 IKTSIKSFLLQPQQIVEAVKSIMKKP-VVYVELP 113
Cdd:PRK10427   81 VQCSIYAFLREPQRVMSAVRKVLSAPqQTHLILE 114
FrwB COG1445
Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and ...
 4-101 1.29e-42

Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism];


Pssm-ID: 441054 [Multi-domain]  Cd Length: 99  Bit Score: 134.85  E-value: 1.29e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468017711   4 NIVAVTACVSGVAHTYMAAERLETVGHHEKWHLKVETQGALGVENRITAEDIARAEVVLLVTDIEIdDPHRFRGLRTIKT 83
Cdd:COG1445     1 KIVAVTACPTGIAHTYMAAEALEKAAKELGHEIKVETQGSVGVENELTAEDIAAADAVILAADIEV-DMERFAGKPVIEV 79

                          90
                  ....*....|....*...
gi 1468017711  84 SIKSFLLQPQQIVEAVKS 101
Cdd:COG1445    80 SVKDAIKDPEALIEKALA 97
PTS_IIB_fructose cd05569
PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate: ...
 5-101 9.26e-36

PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-phosphate ester in to the cytoplasm in preparation for metabolism primarily via glycolysis. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include fructose, chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, and a sensory system with similarity to the bacterial bgl system.


Pssm-ID: 99911 [Multi-domain]  Cd Length: 96  Bit Score: 117.59  E-value: 9.26e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468017711   5 IVAVTACVSGVAHTYMAAERLETVGHHEKWHLKVETQGALGVENRITAEDIARAEVVLLVTDIEIDDpHRFRGLRTIKTS 84
Cdd:cd05569     1 IVAVTACPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADVPVDD-ERFAGKRVYEVS 79

                          90
                  ....*....|....*..
gi 1468017711  85 IKSFLLQPQQIVEAVKS 101
Cdd:cd05569    80 VAEAIKDAEAVIERALA 96
FRU TIGR00829
PTS system, fructose-specific, IIB component; Bacterial PTS transporters transport and ...
 6-86 6.33e-30

PTS system, fructose-specific, IIB component; Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]


Pssm-ID: 129909 [Multi-domain]  Cd Length: 85  Bit Score: 102.55  E-value: 6.33e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468017711   6 VAVTACVSGVAHTYMAAERLETVGHHEKWHLKVETQGALGVENRITAEDIARAEVVLLVTDIEIDDPHRFRGLRTIKTSI 85
Cdd:TIGR00829   1 VAVTACPTGIAHTFMAAEALEKAAKKRGWEVKVETQGSVGAQNALTAEDIAAADGVILAADREIDLSRRFAGKNVYETST 80


                  .
gi 1468017711  86 K 86
Cdd:TIGR00829  81 G 81
PTS_IIB pfam02302
PTS system, Lactose/Cellobiose specific IIB subunit; The bacterial phosphoenolpyruvate: sugar ...
 6-89 1.47e-13

PTS system, Lactose/Cellobiose specific IIB subunit; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This family also contains the fructose specific IIB subunit.


Pssm-ID: 396744  Cd Length: 92  Bit Score: 60.81  E-value: 1.47e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468017711   6 VAVTACVSGVAHTYMAAERLETVGHHEKWhlkVETQGALGVeNRITAEDIAR-AEVVLLVTDIEIDDPHRFRGLRTIKTS 84
Cdd:pfam02302   1 KILTACGAGMATSLMAAEALEKAAKELGI---VEAQGAAGV-NELTAEDIADdADVVILAPDVAVEDLARFAGKPVYVIP 76


                  ....*
gi 1468017711  85 IKSFL 89
Cdd:pfam02302  77 VKDAL 81
 
Name Accession Description Interval E-value
PRK10427 PRK10427
PTS fructose-like transporter subunit IIB;
1-113 3.44e-63

PTS fructose-like transporter subunit IIB;


Pssm-ID: 182451  Cd Length: 114  Bit Score: 187.36  E-value: 3.44e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468017711   1 MDFNIVAVTACVSGVAHTYMAAERLETVGHHEKWHLKVETQGALGVENRITAEDIARAEVVLLVTDIEIDDPHRFRGLRT 80
Cdd:PRK10427    1 MMAYLVAVTACVSGVAHTYMAAERLEKLCQLEKWGVKIETQGALGTENRLTDEDIRRADVVLLITDIELAGAERFEHCRY 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1468017711  81 IKTSIKSFLLQPQQIVEAVKSIMKKP-VVYVELP 113
Cdd:PRK10427   81 VQCSIYAFLREPQRVMSAVRKVLSAPqQTHLILE 114
FrwB COG1445
Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and ...
 4-101 1.29e-42

Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism];


Pssm-ID: 441054 [Multi-domain]  Cd Length: 99  Bit Score: 134.85  E-value: 1.29e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468017711   4 NIVAVTACVSGVAHTYMAAERLETVGHHEKWHLKVETQGALGVENRITAEDIARAEVVLLVTDIEIdDPHRFRGLRTIKT 83
Cdd:COG1445     1 KIVAVTACPTGIAHTYMAAEALEKAAKELGHEIKVETQGSVGVENELTAEDIAAADAVILAADIEV-DMERFAGKPVIEV 79

                          90
                  ....*....|....*...
gi 1468017711  84 SIKSFLLQPQQIVEAVKS 101
Cdd:COG1445    80 SVKDAIKDPEALIEKALA 97
PTS_IIB_fructose cd05569
PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate: ...
 5-101 9.26e-36

PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-phosphate ester in to the cytoplasm in preparation for metabolism primarily via glycolysis. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include fructose, chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, and a sensory system with similarity to the bacterial bgl system.


Pssm-ID: 99911 [Multi-domain]  Cd Length: 96  Bit Score: 117.59  E-value: 9.26e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468017711   5 IVAVTACVSGVAHTYMAAERLETVGHHEKWHLKVETQGALGVENRITAEDIARAEVVLLVTDIEIDDpHRFRGLRTIKTS 84
Cdd:cd05569     1 IVAVTACPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADVPVDD-ERFAGKRVYEVS 79

                          90
                  ....*....|....*..
gi 1468017711  85 IKSFLLQPQQIVEAVKS 101
Cdd:cd05569    80 VAEAIKDAEAVIERALA 96
FRU TIGR00829
PTS system, fructose-specific, IIB component; Bacterial PTS transporters transport and ...
 6-86 6.33e-30

PTS system, fructose-specific, IIB component; Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]


Pssm-ID: 129909 [Multi-domain]  Cd Length: 85  Bit Score: 102.55  E-value: 6.33e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468017711   6 VAVTACVSGVAHTYMAAERLETVGHHEKWHLKVETQGALGVENRITAEDIARAEVVLLVTDIEIDDPHRFRGLRTIKTSI 85
Cdd:TIGR00829   1 VAVTACPTGIAHTFMAAEALEKAAKKRGWEVKVETQGSVGAQNALTAEDIAAADGVILAADREIDLSRRFAGKNVYETST 80


                  .
gi 1468017711  86 K 86
Cdd:TIGR00829  81 G 81
PRK10712 PRK10712
PTS system fructose-specific transporter subunits IIBC; Provisional
 5-84 2.33e-22

PTS system fructose-specific transporter subunits IIBC; Provisional


Pssm-ID: 236740 [Multi-domain]  Cd Length: 563  Bit Score: 90.19  E-value: 2.33e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468017711   5 IVAVTACVSGVAHTYMAAERLETVGHHEKWHLKVETQGALGVENRITAEDIARAEVVLLVTDIEIdDPHRFRGLRTIKTS 84
Cdd:PRK10712  106 VVAVTACPTGVAHTFMAAEAIETEAKKRGWWVKVETRGSVGAGNAITPEEVAAADLVIVAADIEV-DLAKFAGKPMYRTS 184
PRK09765 PRK09765
PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
 5-105 9.62e-22

PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional


Pssm-ID: 182066 [Multi-domain]  Cd Length: 631  Bit Score: 88.64  E-value: 9.62e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468017711   5 IVAVTACVSGVAHTYMAAERLETVGHHEKWHLKVETQGALGVENRITAEDIARAEVVLLVTDIEIDDPHRFRGLRTIKTS 84
Cdd:PRK09765  166 IVCVTACPAGIAHTYMAAEYLEKAGRKLGVNVYVEKQGANGIEGRLTADQLNSATACIFAAEVAIKESERFNGIPALSVP 245

                          90       100
                  ....*....|....*....|.
gi 1468017711  85 IKSFLLQPQQIVEAVKSIMKK 105
Cdd:PRK09765  246 VAEPIKHAEALIQQALELKRS 266
PRK11404 PRK11404
PTS fructose-like transporter subunit IIBC;
2-95 1.40e-19

PTS fructose-like transporter subunit IIBC;


Pssm-ID: 183120 [Multi-domain]  Cd Length: 482  Bit Score: 82.23  E-value: 1.40e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468017711   2 DFNIVAVTACVSGVAHTYMAAERLETVGHHEKWHLKVETQGALGVENRITAEDIARAEVVLLVT--DIEIDDPHRFRGLR 79
Cdd:PRK11404    3 SLRIVAITNCPAGIAHTYMVAEALEQKARSLGHTIKVETQGSSGVENRLSSEEIAAADYVILATgrGLSGDDRARFAGKK 82

                          90
                  ....*....|....*.
gi 1468017711  80 TIKTSIKSFLLQPQQI 95
Cdd:PRK11404   83 VYEIAISQALKNIDQI 98
PRK10474 PRK10474
PTS fructose-like transporter subunit IIB;
20-105 8.14e-18

PTS fructose-like transporter subunit IIB;


Pssm-ID: 170468  Cd Length: 88  Bit Score: 71.84  E-value: 8.14e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468017711  20 MAAERLETVGHHEKWHLKVETQGALGVENRITAEDIARAEVVLLVTDIEIDDPHRFRGLRTIKTSIksfllqpQQIVEAV 99
Cdd:PRK10474    1 MAAEALESAAKAKGWEVKVETQGSIGLENELTAEDVASADMVILTKDIGIKFEERFAGKTIVRVNI-------SDAVKRA 73


                  ....*.
gi 1468017711 100 KSIMKK 105
Cdd:PRK10474   74 DAIMSK 79
PTS_IIB pfam02302
PTS system, Lactose/Cellobiose specific IIB subunit; The bacterial phosphoenolpyruvate: sugar ...
 6-89 1.47e-13

PTS system, Lactose/Cellobiose specific IIB subunit; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This family also contains the fructose specific IIB subunit.


Pssm-ID: 396744  Cd Length: 92  Bit Score: 60.81  E-value: 1.47e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468017711   6 VAVTACVSGVAHTYMAAERLETVGHHEKWhlkVETQGALGVeNRITAEDIAR-AEVVLLVTDIEIDDPHRFRGLRTIKTS 84
Cdd:pfam02302   1 KILTACGAGMATSLMAAEALEKAAKELGI---VEAQGAAGV-NELTAEDIADdADVVILAPDVAVEDLARFAGKPVYVIP 76


                  ....*
gi 1468017711  85 IKSFL 89
Cdd:pfam02302  77 VKDAL 81
PTS_IIB cd00133
PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the ...
 6-99 8.23e-10

PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby regulating their activity.


Pssm-ID: 99904  Cd Length: 84  Bit Score: 51.10  E-value: 8.23e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468017711   6 VAVTACVSGVAHTYMAAERLETVGHHEKWHLKVETQGALGVenritaedIARAEVVLLVTDIEIDDphRFRGLRTIKTSI 85
Cdd:cd00133     1 KILVVCGSGIGSSSMLAEKLEKAAKELGIEVKVEAQGLSEV--------IDLADADLIISTVPLAA--RFLGKPVIVVSP 70

                          90
                  ....*....|....
gi 1468017711  86 KSFLLQPQQIVEAV 99
Cdd:cd00133    71 LLNEKDGEKILEKL 84
FrwC COG1299
Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and ...
 5-98 4.91e-09

Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism];


Pssm-ID: 440910 [Multi-domain]  Cd Length: 469  Bit Score: 52.20  E-value: 4.91e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468017711   5 IVAVTACVSGVAHTYMAAERLETVGHHEKWHLKVETQGALGVENRITAEDIARAEVVLLVTDIEIDDPHRFRGLRTIKTS 84
Cdd:COG1299    10 VVATTTAGATAAAAAAAAAAAAAAAAGGVIVVVVGGGGGGGGNLLTTEEEAAAAAIIIAAADDVEDRFFGKKGKVVVVVA 89

                          90
                  ....*....|....
gi 1468017711  85 IKSFLLQPQQIVEA 98
Cdd:COG1299    90 GGAAKKELLIIAAA 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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