|
Name |
Accession |
Description |
Interval |
E-value |
| GyrA |
COG0188 |
DNA gyrase/topoisomerase IV, subunit A [Replication, recombination and repair]; |
1-797 |
0e+00 |
|
DNA gyrase/topoisomerase IV, subunit A [Replication, recombination and repair];
Pssm-ID: 439958 [Multi-domain] Cd Length: 804 Bit Score: 1087.38 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 1 MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDS 80
Cdd:COG0188 6 PAERIIPVNLEDEMKRSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDKPYKKSARVVGDVMGKYHPHGDS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 81 SVYEAMVRLSQDWKLRHVLIEMYGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 160
Cdd:COG0188 86 AVYDALVRMAQDFSMRYPLVDGQGNFGSIDGDPAAAMRYTEARLAKIAEELLADIDKDTVDFVPNYDGSEQEPTVLPARF 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 161 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVR 240
Cdd:COG0188 166 PNLLVNGSSGIAVGMATNIPPHNLGEVIDACIALIDNPDATIEELMEYIPGPDFPTGGIIVGREGIREAYETGRGSIRVR 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 241 SKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELKKDVNSESIKNYLYKNS 320
Cdd:COG0188 246 AKAEIEELKRGREQIVVTEIPYQVNKARLIEKIAELVKEKKIEGISDVRDESDRDGMRIVIELKRDANPEVVLNQLYKHT 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 321 DLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKR 400
Cdd:COG0188 326 QLQTSFGINMLALVDGRPRVLNLKEILEAFLDHRREVVTRRTQFELRKAEERAHILEGLLIALDNIDEVIAIIRASKDPD 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 401 DAKENLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSERL 480
Cdd:COG0188 406 EAKEALMERFGLSEIQAEAILDMRLRRLTGLEREKIEDEYAELLKEIAELEDILASEERLLKIIKEELLEIKKKYGDERR 485
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 481 SLieAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNK 555
Cdd:COG0188 486 TE--IEEAEGEIDIEDLIPDEDVVVTLSHKGYIKRTPLDTYRAQrrggkGVSGMGTKEEDFVEHLFVASTHDTLLFFTNK 563
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 556 GRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRfNKPLIATK 635
Cdd:COG0188 564 GRVYRLKVYELPEGSRTAKGKPIVNLLPLEPGEKITAVLPVKEFDEDKYLLFATKKGTVKKTPLSDFSNIR-KNGIIAIN 642
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 636 VKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKR 715
Cdd:COG0188 643 LKEGDELVGVALTDGDDDVLLATSNGKAIRFPESDVRPMGRTARGVRGIRLKEGDEVVGMAVVDEEDDLLTVTENGYGKR 722
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 716 ISFKILQVAKRAQRGITLLKELKKNPHrIVAAHVVTgEHSQYTLYSKSNEEHGL-INDIHKSEQYTNGSFIVDTDDFGEV 794
Cdd:COG0188 723 TPLSEYRLQGRGGKGVITIKLTEKNGK-LVGALVVN-DDDELMLITSSGQLIRTpVSDIRVTGRNTQGVRLIRLDEGDKV 800
|
...
gi 1468255912 795 IDM 797
Cdd:COG0188 801 VSV 803
|
|
| PRK05561 |
PRK05561 |
DNA topoisomerase 4 subunit A; |
1-743 |
0e+00 |
|
DNA topoisomerase 4 subunit A;
Pssm-ID: 235503 [Multi-domain] Cd Length: 742 Bit Score: 1020.42 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 1 MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDS 80
Cdd:PRK05561 6 MLEGIEDLPLEEFLEERYLRYAMYVIMDRALPDVRDGLKPVQRRILYAMSELGLTPDAKFKKSARVVGDVLGKYHPHGDS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 81 SVYEAMVRLSQDWKLRHVLIEMYGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 160
Cdd:PRK05561 86 SIYDAMVRMAQDFSYRYPLVDGQGNFGSIDGDPAAAMRYTEARLSPIAELLLEEIDEGTVDFVPNFDGTLKEPTVLPARF 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 161 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239
Cdd:PRK05561 166 PNLLLNGATGIAVGMATDIPPHNLREVIDAAIHLIDNPDATLEELMEFVPGPDFPTGgEIITGRDGIRKAYETGRGSIRV 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTG-LRIAIELKKD-VNSESIKNYLY 317
Cdd:PRK05561 246 RARWEIEDLAGGRWQIVITELPYQVSKAKLIEQIAELMNAKKLPGIADVRDESDRENpVRIVIEPKSNrVDPEALMNHLF 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 318 KNSDLQISYNFNMVAIS-DGRPKLMGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSS 396
Cdd:PRK05561 326 ATTDLESSYRVNMNAIGlDGRPRVKGLKEILSEWLDHRREVVTRRSQFRLDKVEKRLHILEGLLIAFLNIDEVIRIIRES 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 397 KnkrDAKENLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK 476
Cdd:PRK05561 406 D---EPKANLMARFDLSEIQAEAILELRLRRLAKLEEIEIRKEQDELRKEIAELEAILASERKLRKLIKKELKADAKKFG 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 477 SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGvedIGLKDGDSLLKHQEVNTQDTVLVFTNKG 556
Cdd:PRK05561 483 DPRRTPIEEAEEAIAIDEEALIPDEPVTVVLSKKGWVRRAKGHSIDASG---LSFKEGDSLLFAFEARTTDKLLLFTSTG 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 557 RYLFIPVHKLADIRwKElGQHVSQIVPIEEDEVVINVFnekDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIAtk 635
Cdd:PRK05561 560 RVYSLPVHELPSAR-GD-GEPLTGLVDLAPGEEIVHVL---AFDPDQKLLLASSAGYGFVVTLeDLVARTRAGKAVIN-- 632
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 636 VKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGlRAAGVKSINLKA-EDFVVMTEGVSENDTILMATQRGSLK 714
Cdd:PRK05561 633 LKDGDEVLPPVPVEDDDHLAAITSNGRLLVFPLSELPELG-KGKGVKLINLPKdDDGLVDLRVLNPEDGLVLLTAGKRKL 711
|
730 740 750
....*....|....*....|....*....|.
gi 1468255912 715 RISFKILQ--VAKRAQRGITLLKELKKNPHR 743
Cdd:PRK05561 712 KLKPSELEkyRGKRARRGRLLPRGLKRVPRF 742
|
|
| parC_Gpos |
TIGR01061 |
DNA topoisomerase IV, A subunit, Gram-positive; Operationally, topoisomerase IV is a type II ... |
5-742 |
0e+00 |
|
DNA topoisomerase IV, A subunit, Gram-positive; Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273422 [Multi-domain] Cd Length: 738 Bit Score: 911.49 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 5 IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYE 84
Cdd:TIGR01061 1 IFNKPLEEVFGESFGKYAKYIIQDRALPDIRDGLKPVQRRILYAMFQDGNTFDKPYKKSARTVGEIMGKYHPHGDSSIYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 85 AMVRLSQDWKLRHVLIEMYGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLL 164
Cdd:TIGR01061 81 AMVRMSQDWKNNWTLVEMHGNNGSIDGDNAAAMRYTEARLSLIASELLKDIDKKTVSFIPNFDDSEKEPTVLPALFPNLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 165 VNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244
Cdd:TIGR01061 161 INGATGIAAGYATNIPPHNLNEVIDALIYRIDHPNCSVDKLMEIVKGPDFPTGGIIQGEDGISKAYETGKGKFIIRAKIE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELKKDVNSESIKNYLYKNSDLQI 324
Cdd:TIGR01061 241 IEVNKNGLNQIVITEIPYETNKANIVKKIEEIIFDNKVAGIEEVRDESDRNGIRIIIELKKDANAEKILNFLFKHTDLQI 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 325 SYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKE 404
Cdd:TIGR01061 321 NYNFNMVAIANRTPIQVGLLSYLDAYIKHCHEVIINRSKYELEKASKRLEIVEGLIKAISIIDEIIKLIRSSEDKSDAKE 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 405 NLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSERLSLIE 484
Cdd:TIGR01061 401 NLIDNFKFTENQAEAIVSLRLYRLTNTDIFELKEEQNELEKKIISLEQIIASEKARNKLLKKQLEEYKKQFAQQRRSQIE 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 485 AEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVH 564
Cdd:TIGR01061 481 DFINQIKINESELIENEDYYVLITKAGYIKRTSNRSFASSKYTDFGSKDDDILFAQTIANTTDQILIFTSLGNIINIPVH 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 565 KLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA-FYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLI 643
Cdd:TIGR01061 561 KLADIRWKDLGEHLSNKITFDENETIVFVGTMNEFDVDQpILVLASKLGMVKRIELTELNIKRNSKATLCIKLKDKDHLI 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 644 SVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQV 723
Cdd:TIGR01061 641 SAFLQQKDKLICLVSDLGYALVFHTNEIPVVGAKAAGVKGMKLKEDDQVKSGVIFEANESLVLLTQRGSVKRLSISELVV 720
|
730
....*....|....*....
gi 1468255912 724 AKRAQRGITLLkELKKNPH 742
Cdd:TIGR01061 721 TSRAATGKKLL-PLKKKPH 738
|
|
| TOP4c |
cd00187 |
DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), ... |
27-471 |
0e+00 |
|
DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Pssm-ID: 238111 [Multi-domain] Cd Length: 445 Bit Score: 637.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 27 QERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMYGNN 106
Cdd:cd00187 1 NGRALPDVRDGLKPVQRRILYAMFKRGLTPDKPEKKVARLVGDVAGKYHPHGDSSLYDTIVRMAQDFSNNIPLLDPQGNF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 107 GSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNLAE 186
Cdd:cd00187 81 GSRDGDDAAAMRYTETRLSPIARLLLPDIDDPTVDFVPNYDGQEVEPEVLPPIFPNLLVNGSSGIAVGMATNIPPHNLRE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 187 VIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVEEETLRnGRKQLIITEIPYEVNK 266
Cdd:cd00187 161 VIDALRALIDNPEASIDELMEIIKGPDFPTGGIIEGRAGIREAYETGRGRYIIRGKYEIEDDE-GRNTIEITELPYQVNK 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 267 SSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELKKDVNSESIKNYLYKNSDLQISYNFNMVAIS-DGRPKLMGIRQ 345
Cdd:cd00187 240 AKLKEKIAELVKDKKIEGISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKVTKLQTTFGINMVAFDpNGRPKKLNLKE 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 346 IIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKnkrDAKENLIEVYE---FTEEQAEAIVM 422
Cdd:cd00187 320 ILQEFLDHRLEVYTRRKEYELGKAEARLHILEGLLKAILNIDEVINLIRSSD---EAKKALIEELEklgFSEIQADAILD 396
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 1468255912 423 LQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEI 471
Cdd:cd00187 397 MRLRRLTKLEREKLLKELKELEAEIEDLEKILASEERPKDLWKEELDEF 445
|
|
| TOP4c |
smart00434 |
DNA Topoisomerase IV; Bacterial DNA topoisomerase IV, GyrA, ParC |
8-461 |
0e+00 |
|
DNA Topoisomerase IV; Bacterial DNA topoisomerase IV, GyrA, ParC
Pssm-ID: 214660 [Multi-domain] Cd Length: 444 Bit Score: 584.91 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 8 LSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYEAMV 87
Cdd:smart00434 1 IDIEDFINKEYLDYSMSVINGRAIPDVRDGLKPVQRRILYAMFKRGLTPDEPKVKSARGVGDVMGKYHPHGDSSLYDTIV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 88 RLSQDWKLRHVLIEMYGNNGSI-DNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVN 166
Cdd:smart00434 81 RMAQDFSNNYPLLDGQGNFGSRlDGDDAAAMRYTETRLSPLARLLLPDIDKDTVDFVPNYDGQEIEPTVLPPIIPNLLVN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 167 GSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTggiiqgidgikKAYESGKGRIIVRSKVEEE 246
Cdd:smart00434 161 GSSGIAVGMATNIPPHNLREVIDAVRRLIDNPDASIDELMMIPWGPDFPT-----------GGEIVGPGKYVVRGKIEIE 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 247 TlrngRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDET-DRTGLRIAIELKKDVNSESIKNYLYKNSDLQIS 325
Cdd:smart00434 230 D----DNTIVITELPYQVNTADLIEKIAELVKDKKIEGIIDVRDEShDRTGVRIVIELKRGAMAEVVLNGLYKLTKLQTT 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 326 YNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVVANRTKFELDNAE-KRMHIVEGLIKALSILDKVIELIRSSKNKR-DA 402
Cdd:smart00434 306 FSINMLALFDnGRPKKYNLKEILKEFLDHRLEVYTRRKEYLLGKLEaERLHILEGLFIALSIIDEIIVLIRSSKDLAkEA 385
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 1468255912 403 KENLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALL 461
Cdd:smart00434 386 KEKLMERFELSEIQADAILDMRLRRLTKLEVEKLEKELKELEKEIEDLEKILASEEWLN 444
|
|
| DNA_topoisoIV |
pfam00521 |
DNA gyrase/topoisomerase IV, subunit A; |
29-469 |
0e+00 |
|
DNA gyrase/topoisomerase IV, subunit A;
Pssm-ID: 459843 [Multi-domain] Cd Length: 432 Bit Score: 579.89 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 29 RALPDVRDGLKPVQRRILYAMYSSgNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMYGNNGS 108
Cdd:pfam00521 1 RAIPDVRDGLKPVQRRILYAMFEL-LNLDKPYKKVARLVGDVMGKYHPHGDASLYDAIVRMAQDFVGNIPLLDGQGNFGS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 109 -IDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNLAEV 187
Cdd:pfam00521 80 rIDGDKDAAMRYTETRLSKIARELFPDIDDDTVDYVPNYDGTEVEPTVLPPIIPNLLVNGAEGIAVGMATNIPPHNLREI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 188 IQATLKYIDNPDITVnqLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVEEETlrngRKQLIITEIPYEVNKS 267
Cdd:pfam00521 160 IDALIALLDGPEATL--LMKYIMGPDFPTGGGIIGKGGIKEAYKTGRGKITVRAKVEIED----RKTIVITELPYGVWTS 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 268 SLVKRIDELRADKKVDGIVEVRDETDRtGLRIAIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQII 347
Cdd:pfam00521 234 DLIEKIEELVKNGKIKGISDIRDESDR-GVRIVIELKRGADPEVVLNDLYKKTKLQTSFSTNNLVLFDGGPKYLGLKEIL 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 348 DSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEvyEFTEEQAEAIVMLQLYR 427
Cdd:pfam00521 313 KEFLDHRLEVYERRKEYLLEKLEERLHILEGLLIALNNIDFVIEIIRGSIDRKKAKKNLIE--ELSEIQADYLLDMRLRR 390
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 1468255912 428 LTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELN 469
Cdd:pfam00521 391 LTKEEVDKLLEEIDELEKEIAELEKLLASEKKLNDLWIEELD 432
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| GyrA |
COG0188 |
DNA gyrase/topoisomerase IV, subunit A [Replication, recombination and repair]; |
1-797 |
0e+00 |
|
DNA gyrase/topoisomerase IV, subunit A [Replication, recombination and repair];
Pssm-ID: 439958 [Multi-domain] Cd Length: 804 Bit Score: 1087.38 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 1 MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDS 80
Cdd:COG0188 6 PAERIIPVNLEDEMKRSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDKPYKKSARVVGDVMGKYHPHGDS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 81 SVYEAMVRLSQDWKLRHVLIEMYGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 160
Cdd:COG0188 86 AVYDALVRMAQDFSMRYPLVDGQGNFGSIDGDPAAAMRYTEARLAKIAEELLADIDKDTVDFVPNYDGSEQEPTVLPARF 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 161 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVR 240
Cdd:COG0188 166 PNLLVNGSSGIAVGMATNIPPHNLGEVIDACIALIDNPDATIEELMEYIPGPDFPTGGIIVGREGIREAYETGRGSIRVR 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 241 SKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELKKDVNSESIKNYLYKNS 320
Cdd:COG0188 246 AKAEIEELKRGREQIVVTEIPYQVNKARLIEKIAELVKEKKIEGISDVRDESDRDGMRIVIELKRDANPEVVLNQLYKHT 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 321 DLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKR 400
Cdd:COG0188 326 QLQTSFGINMLALVDGRPRVLNLKEILEAFLDHRREVVTRRTQFELRKAEERAHILEGLLIALDNIDEVIAIIRASKDPD 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 401 DAKENLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSERL 480
Cdd:COG0188 406 EAKEALMERFGLSEIQAEAILDMRLRRLTGLEREKIEDEYAELLKEIAELEDILASEERLLKIIKEELLEIKKKYGDERR 485
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 481 SLieAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNK 555
Cdd:COG0188 486 TE--IEEAEGEIDIEDLIPDEDVVVTLSHKGYIKRTPLDTYRAQrrggkGVSGMGTKEEDFVEHLFVASTHDTLLFFTNK 563
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 556 GRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRfNKPLIATK 635
Cdd:COG0188 564 GRVYRLKVYELPEGSRTAKGKPIVNLLPLEPGEKITAVLPVKEFDEDKYLLFATKKGTVKKTPLSDFSNIR-KNGIIAIN 642
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 636 VKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKR 715
Cdd:COG0188 643 LKEGDELVGVALTDGDDDVLLATSNGKAIRFPESDVRPMGRTARGVRGIRLKEGDEVVGMAVVDEEDDLLTVTENGYGKR 722
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 716 ISFKILQVAKRAQRGITLLKELKKNPHrIVAAHVVTgEHSQYTLYSKSNEEHGL-INDIHKSEQYTNGSFIVDTDDFGEV 794
Cdd:COG0188 723 TPLSEYRLQGRGGKGVITIKLTEKNGK-LVGALVVN-DDDELMLITSSGQLIRTpVSDIRVTGRNTQGVRLIRLDEGDKV 800
|
...
gi 1468255912 795 IDM 797
Cdd:COG0188 801 VSV 803
|
|
| PRK05561 |
PRK05561 |
DNA topoisomerase 4 subunit A; |
1-743 |
0e+00 |
|
DNA topoisomerase 4 subunit A;
Pssm-ID: 235503 [Multi-domain] Cd Length: 742 Bit Score: 1020.42 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 1 MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDS 80
Cdd:PRK05561 6 MLEGIEDLPLEEFLEERYLRYAMYVIMDRALPDVRDGLKPVQRRILYAMSELGLTPDAKFKKSARVVGDVLGKYHPHGDS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 81 SVYEAMVRLSQDWKLRHVLIEMYGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 160
Cdd:PRK05561 86 SIYDAMVRMAQDFSYRYPLVDGQGNFGSIDGDPAAAMRYTEARLSPIAELLLEEIDEGTVDFVPNFDGTLKEPTVLPARF 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 161 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239
Cdd:PRK05561 166 PNLLLNGATGIAVGMATDIPPHNLREVIDAAIHLIDNPDATLEELMEFVPGPDFPTGgEIITGRDGIRKAYETGRGSIRV 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTG-LRIAIELKKD-VNSESIKNYLY 317
Cdd:PRK05561 246 RARWEIEDLAGGRWQIVITELPYQVSKAKLIEQIAELMNAKKLPGIADVRDESDRENpVRIVIEPKSNrVDPEALMNHLF 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 318 KNSDLQISYNFNMVAIS-DGRPKLMGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSS 396
Cdd:PRK05561 326 ATTDLESSYRVNMNAIGlDGRPRVKGLKEILSEWLDHRREVVTRRSQFRLDKVEKRLHILEGLLIAFLNIDEVIRIIRES 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 397 KnkrDAKENLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK 476
Cdd:PRK05561 406 D---EPKANLMARFDLSEIQAEAILELRLRRLAKLEEIEIRKEQDELRKEIAELEAILASERKLRKLIKKELKADAKKFG 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 477 SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGvedIGLKDGDSLLKHQEVNTQDTVLVFTNKG 556
Cdd:PRK05561 483 DPRRTPIEEAEEAIAIDEEALIPDEPVTVVLSKKGWVRRAKGHSIDASG---LSFKEGDSLLFAFEARTTDKLLLFTSTG 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 557 RYLFIPVHKLADIRwKElGQHVSQIVPIEEDEVVINVFnekDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIAtk 635
Cdd:PRK05561 560 RVYSLPVHELPSAR-GD-GEPLTGLVDLAPGEEIVHVL---AFDPDQKLLLASSAGYGFVVTLeDLVARTRAGKAVIN-- 632
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 636 VKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGlRAAGVKSINLKA-EDFVVMTEGVSENDTILMATQRGSLK 714
Cdd:PRK05561 633 LKDGDEVLPPVPVEDDDHLAAITSNGRLLVFPLSELPELG-KGKGVKLINLPKdDDGLVDLRVLNPEDGLVLLTAGKRKL 711
|
730 740 750
....*....|....*....|....*....|.
gi 1468255912 715 RISFKILQ--VAKRAQRGITLLKELKKNPHR 743
Cdd:PRK05561 712 KLKPSELEkyRGKRARRGRLLPRGLKRVPRF 742
|
|
| parC_Gpos |
TIGR01061 |
DNA topoisomerase IV, A subunit, Gram-positive; Operationally, topoisomerase IV is a type II ... |
5-742 |
0e+00 |
|
DNA topoisomerase IV, A subunit, Gram-positive; Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273422 [Multi-domain] Cd Length: 738 Bit Score: 911.49 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 5 IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYE 84
Cdd:TIGR01061 1 IFNKPLEEVFGESFGKYAKYIIQDRALPDIRDGLKPVQRRILYAMFQDGNTFDKPYKKSARTVGEIMGKYHPHGDSSIYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 85 AMVRLSQDWKLRHVLIEMYGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLL 164
Cdd:TIGR01061 81 AMVRMSQDWKNNWTLVEMHGNNGSIDGDNAAAMRYTEARLSLIASELLKDIDKKTVSFIPNFDDSEKEPTVLPALFPNLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 165 VNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244
Cdd:TIGR01061 161 INGATGIAAGYATNIPPHNLNEVIDALIYRIDHPNCSVDKLMEIVKGPDFPTGGIIQGEDGISKAYETGKGKFIIRAKIE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELKKDVNSESIKNYLYKNSDLQI 324
Cdd:TIGR01061 241 IEVNKNGLNQIVITEIPYETNKANIVKKIEEIIFDNKVAGIEEVRDESDRNGIRIIIELKKDANAEKILNFLFKHTDLQI 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 325 SYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKE 404
Cdd:TIGR01061 321 NYNFNMVAIANRTPIQVGLLSYLDAYIKHCHEVIINRSKYELEKASKRLEIVEGLIKAISIIDEIIKLIRSSEDKSDAKE 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 405 NLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSERLSLIE 484
Cdd:TIGR01061 401 NLIDNFKFTENQAEAIVSLRLYRLTNTDIFELKEEQNELEKKIISLEQIIASEKARNKLLKKQLEEYKKQFAQQRRSQIE 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 485 AEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVH 564
Cdd:TIGR01061 481 DFINQIKINESELIENEDYYVLITKAGYIKRTSNRSFASSKYTDFGSKDDDILFAQTIANTTDQILIFTSLGNIINIPVH 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 565 KLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA-FYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLI 643
Cdd:TIGR01061 561 KLADIRWKDLGEHLSNKITFDENETIVFVGTMNEFDVDQpILVLASKLGMVKRIELTELNIKRNSKATLCIKLKDKDHLI 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 644 SVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQV 723
Cdd:TIGR01061 641 SAFLQQKDKLICLVSDLGYALVFHTNEIPVVGAKAAGVKGMKLKEDDQVKSGVIFEANESLVLLTQRGSVKRLSISELVV 720
|
730
....*....|....*....
gi 1468255912 724 AKRAQRGITLLkELKKNPH 742
Cdd:TIGR01061 721 TSRAATGKKLL-PLKKKPH 738
|
|
| PRK05560 |
PRK05560 |
DNA gyrase subunit A; Validated |
1-754 |
0e+00 |
|
DNA gyrase subunit A; Validated
Pssm-ID: 235502 [Multi-domain] Cd Length: 805 Bit Score: 868.96 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 1 MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDS 80
Cdd:PRK05560 1 EGDRIIPVNIEDEMKRSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGNTPDKPYKKSARIVGDVMGKYHPHGDS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 81 SVYEAMVRLSQDWKLRHVLIEMYGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 160
Cdd:PRK05560 81 AVYDALVRMAQDFSMRYPLVDGQGNFGSIDGDPAAAMRYTEARMSKIAHELLADIDKETVDFVPNYDGSEQEPTVLPARF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 161 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVR 240
Cdd:PRK05560 161 PNLLVNGSSGIAVGMATNIPPHNLGEVIDACLALIDNPDITIEELMEIIPGPDFPTGGIILGRSGIREAYRTGRGSIVMR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 241 SKVEEETLrNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELKKDVNSESIKNYLYKNS 320
Cdd:PRK05560 241 AKAEIEEI-KGREAIIVTEIPYQVNKARLIEKIAELVKEKKIEGISDLRDESDRDGMRIVIELKRDAVPEVVLNNLYKHT 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 321 DLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKR 400
Cdd:PRK05560 320 QLQTSFGINMLALVDGQPKLLNLKEILEAFLEHRKEVITRRTRFELRKAEERAHILEGLLIALDNIDEVIALIRASPTPA 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 401 DAKENLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSERL 480
Cdd:PRK05560 400 EAKEGLMERFGLSEIQAQAILDMRLQRLTGLERDKIEDEYKELLALIADLKDILASPERLLEIIKEELLEIKEKFGDPRR 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 481 SliEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNAS-----GVEDIGLKDGDSlLKHQEV-NTQDTVLVFTN 554
Cdd:PRK05560 480 T--EIIEGEGDIDDEDLIPEEDVVVTLTHGGYIKRTPLDEYRAQrrggkGVSGAKTKEDDF-VEHLFVaSTHDTLLFFTN 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 555 KGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKpLIAT 634
Cdd:PRK05560 557 RGRVYRLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNG-IIAI 635
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 635 KVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVV-MTEGVSENDTILMATQRGSL 713
Cdd:PRK05560 636 NLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVsMDVVREDSQEILTVTENGYG 715
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 1468255912 714 KRISFKILQVAKRAQRGITLLKELKKNpHRIVAAHVVTGEH 754
Cdd:PRK05560 716 KRTPVSEYRLQGRGGKGVITIKITEKN-GKLVGALPVDDDD 755
|
|
| gyrA |
TIGR01063 |
DNA gyrase, A subunit; This model describes the common type II DNA topoisomerase (DNA gyrase). ... |
5-790 |
0e+00 |
|
DNA gyrase, A subunit; This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273423 [Multi-domain] Cd Length: 800 Bit Score: 804.61 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 5 IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYE 84
Cdd:TIGR01063 1 IVPVNIEEEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMYELGLTPDKPYKKSARIVGDVMGKYHPHGDSAIYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 85 AMVRLSQDWKLRHVLIEMYGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLL 164
Cdd:TIGR01063 81 TLVRMAQDFSLRYPLVDGQGNFGSIDGDPPAAMRYTEARLTKIAEELLRDIDKETVDFVPNYDGSEQEPTVLPSRFPNLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 165 VNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244
Cdd:TIGR01063 161 VNGSSGIAVGMATNIPPHNLGEIIDALLAYIDNPDISIQELLEVIKGPDFPTGGIILGRSGIRSAYETGRGSIVIRARAE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELKKDVNSESIKNYLYKNSDLQI 324
Cdd:TIGR01063 241 IEEDSKGREAIIVTEIPYQVNKARLIEKIAELVREKKIEGISDIRDESDREGIRIVIELKRDAVAEVVLNNLYKQTQLQV 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 325 SYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKE 404
Cdd:TIGR01063 321 SFGINMLALVKGLPKVLNLKELLEAFVEHRKDVITRRTIFELRKAEERAHILEGLLIALDNIDEVIALIRASQNTEEAKT 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 405 NLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSERLSlIE 484
Cdd:TIGR01063 401 RLVERFSLSEIQAQAILDMRLQRLTGLEREKLQEEYKELLELIADLEDILASEERVLEIIREELEEIKEQFGDPRRT-EI 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 485 AEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYL 559
Cdd:TIGR01063 480 VYDESEDIDIEDLIARENVVVTLSHNGYVKRVPVSAYRLQkrggkGVSGADMKDDDFIEQLLVASTHDYLLFFTNRGKVY 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 560 FIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRfNKPLIATKVKEN 639
Cdd:TIGR01063 560 WLKVYQIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIR-SNGIIAIKLDDG 638
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 640 DDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFK 719
Cdd:TIGR01063 639 DELISVRLTSGEDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIE 718
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1468255912 720 ILQVAKRAQRGITLLKELKKNpHRIVAAHVVTGEHSQYTLYSKSNEEHGLINDIHKSEQYTNGSFIVDTDD 790
Cdd:TIGR01063 719 EYRETSRGGKGVKSIKITDRN-GQVVGAIAVDDDDELMLITSAGKLIRTSVQDVSEQGRNTQGVRLIRLDE 788
|
|
| PRK13979 |
PRK13979 |
DNA topoisomerase IV subunit A; Provisional |
2-702 |
0e+00 |
|
DNA topoisomerase IV subunit A; Provisional
Pssm-ID: 237576 [Multi-domain] Cd Length: 957 Bit Score: 707.25 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 2 SEIIQdLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSS 81
Cdd:PRK13979 11 NNIIK-IPLEEAMPENYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYYKSARIVGDILGKYHPHGDSS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 82 VYEAMVRLSQDWKLRHVLIEMYGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFP 161
Cdd:PRK13979 90 VYDAMVILAQDFTTRMPLIDGHGNWGSIDGDSAAAMRYTEARLTPIAMEMLRDIDKDVVNMVDNYSDSEKEPEVLPARYP 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 162 NLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRS 241
Cdd:PRK13979 170 NLLVNGAFGIAVGLATNIPPHNLKEVIDGTLAYIDNNEITTKELMNYIKGPDLPTGGILIGKKSLLSAYETGEGKVTLRA 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKK----VDGIVEVRDETDRTGLRIAIELKKDVN---SESIKN 314
Cdd:PRK13979 250 KTKIEKLENGRLGIVITEFPYRRNKAKLLQTISEMTADKKhskaLENISDIRDESDRNGIRAVIEFKKSADedvAEKVLK 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 315 YLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIR 394
Cdd:PRK13979 330 YLYKKTDLQCNISFNMVALADGKPETMGLKTMLKHYVEHQKEVVTRRTKKELEIAEKRFHIVEGFIKAIGIMDEIIKTIR 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 395 SSKNKRDAKENLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKK 474
Cdd:PRK13979 410 SSKSKKDASENLIEKFGFTDEQAEAILELMLYRLTGLEIVAFEKEYKELEKLIKKLTKILSSEKELLKVIKKELKEVKEK 489
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 475 FKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASG--VEDIGLKDGDSLLKHQEVNTQDTVLVF 552
Cdd:PRK13979 490 YGDERRTSIIEDDEKAKIDVEELIVVEDVVITLSNEGFIKRIPLKSYNRSNsnVEDIEYREGDFNKFLIQSNTKDTLLIF 569
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 553 TNKGRYLFIPVHKLADIRWKELGQHVSQIVP-IE-EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTrFNKp 630
Cdd:PRK13979 570 TDKGNMYQIKGINIPEFKWKEKGERLDEIIKgIDlESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTSLDKFVTN-YTK- 647
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1468255912 631 LIATKVKENDDLISVM---RFEKDQLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSEND 702
Cdd:PRK13979 648 LMALKLKKGEKLIKVKlvdRTREEKFIKIKTKKGLSFTVEEPELEPVDRNIIGYQLFDLLPNDSIKKVDFCDNYE 722
|
|
| TOP4c |
cd00187 |
DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), ... |
27-471 |
0e+00 |
|
DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Pssm-ID: 238111 [Multi-domain] Cd Length: 445 Bit Score: 637.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 27 QERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMYGNN 106
Cdd:cd00187 1 NGRALPDVRDGLKPVQRRILYAMFKRGLTPDKPEKKVARLVGDVAGKYHPHGDSSLYDTIVRMAQDFSNNIPLLDPQGNF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 107 GSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNLAE 186
Cdd:cd00187 81 GSRDGDDAAAMRYTETRLSPIARLLLPDIDDPTVDFVPNYDGQEVEPEVLPPIFPNLLVNGSSGIAVGMATNIPPHNLRE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 187 VIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVEEETLRnGRKQLIITEIPYEVNK 266
Cdd:cd00187 161 VIDALRALIDNPEASIDELMEIIKGPDFPTGGIIEGRAGIREAYETGRGRYIIRGKYEIEDDE-GRNTIEITELPYQVNK 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 267 SSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELKKDVNSESIKNYLYKNSDLQISYNFNMVAIS-DGRPKLMGIRQ 345
Cdd:cd00187 240 AKLKEKIAELVKDKKIEGISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKVTKLQTTFGINMVAFDpNGRPKKLNLKE 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 346 IIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKnkrDAKENLIEVYE---FTEEQAEAIVM 422
Cdd:cd00187 320 ILQEFLDHRLEVYTRRKEYELGKAEARLHILEGLLKAILNIDEVINLIRSSD---EAKKALIEELEklgFSEIQADAILD 396
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 1468255912 423 LQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEI 471
Cdd:cd00187 397 MRLRRLTKLEREKLLKELKELEAEIEDLEKILASEERPKDLWKEELDEF 445
|
|
| TOP4c |
smart00434 |
DNA Topoisomerase IV; Bacterial DNA topoisomerase IV, GyrA, ParC |
8-461 |
0e+00 |
|
DNA Topoisomerase IV; Bacterial DNA topoisomerase IV, GyrA, ParC
Pssm-ID: 214660 [Multi-domain] Cd Length: 444 Bit Score: 584.91 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 8 LSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYEAMV 87
Cdd:smart00434 1 IDIEDFINKEYLDYSMSVINGRAIPDVRDGLKPVQRRILYAMFKRGLTPDEPKVKSARGVGDVMGKYHPHGDSSLYDTIV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 88 RLSQDWKLRHVLIEMYGNNGSI-DNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVN 166
Cdd:smart00434 81 RMAQDFSNNYPLLDGQGNFGSRlDGDDAAAMRYTETRLSPLARLLLPDIDKDTVDFVPNYDGQEIEPTVLPPIIPNLLVN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 167 GSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTggiiqgidgikKAYESGKGRIIVRSKVEEE 246
Cdd:smart00434 161 GSSGIAVGMATNIPPHNLREVIDAVRRLIDNPDASIDELMMIPWGPDFPT-----------GGEIVGPGKYVVRGKIEIE 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 247 TlrngRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDET-DRTGLRIAIELKKDVNSESIKNYLYKNSDLQIS 325
Cdd:smart00434 230 D----DNTIVITELPYQVNTADLIEKIAELVKDKKIEGIIDVRDEShDRTGVRIVIELKRGAMAEVVLNGLYKLTKLQTT 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 326 YNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVVANRTKFELDNAE-KRMHIVEGLIKALSILDKVIELIRSSKNKR-DA 402
Cdd:smart00434 306 FSINMLALFDnGRPKKYNLKEILKEFLDHRLEVYTRRKEYLLGKLEaERLHILEGLFIALSIIDEIIVLIRSSKDLAkEA 385
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 1468255912 403 KENLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALL 461
Cdd:smart00434 386 KEKLMERFELSEIQADAILDMRLRRLTKLEVEKLEKELKELEKEIEDLEKILASEEWLN 444
|
|
| DNA_topoisoIV |
pfam00521 |
DNA gyrase/topoisomerase IV, subunit A; |
29-469 |
0e+00 |
|
DNA gyrase/topoisomerase IV, subunit A;
Pssm-ID: 459843 [Multi-domain] Cd Length: 432 Bit Score: 579.89 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 29 RALPDVRDGLKPVQRRILYAMYSSgNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMYGNNGS 108
Cdd:pfam00521 1 RAIPDVRDGLKPVQRRILYAMFEL-LNLDKPYKKVARLVGDVMGKYHPHGDASLYDAIVRMAQDFVGNIPLLDGQGNFGS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 109 -IDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNLAEV 187
Cdd:pfam00521 80 rIDGDKDAAMRYTETRLSKIARELFPDIDDDTVDYVPNYDGTEVEPTVLPPIIPNLLVNGAEGIAVGMATNIPPHNLREI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 188 IQATLKYIDNPDITVnqLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVEEETlrngRKQLIITEIPYEVNKS 267
Cdd:pfam00521 160 IDALIALLDGPEATL--LMKYIMGPDFPTGGGIIGKGGIKEAYKTGRGKITVRAKVEIED----RKTIVITELPYGVWTS 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 268 SLVKRIDELRADKKVDGIVEVRDETDRtGLRIAIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQII 347
Cdd:pfam00521 234 DLIEKIEELVKNGKIKGISDIRDESDR-GVRIVIELKRGADPEVVLNDLYKKTKLQTSFSTNNLVLFDGGPKYLGLKEIL 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 348 DSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEvyEFTEEQAEAIVMLQLYR 427
Cdd:pfam00521 313 KEFLDHRLEVYERRKEYLLEKLEERLHILEGLLIALNNIDFVIEIIRGSIDRKKAKKNLIE--ELSEIQADYLLDMRLRR 390
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 1468255912 428 LTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELN 469
Cdd:pfam00521 391 LTKEEVDKLLEEIDELEKEIAELEKLLASEKKLNDLWIEELD 432
|
|
| parC_Gneg |
TIGR01062 |
DNA topoisomerase IV, A subunit, proteobacterial; Operationally, topoisomerase IV is a type II ... |
5-740 |
2.02e-152 |
|
DNA topoisomerase IV, A subunit, proteobacterial; Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 130134 [Multi-domain] Cd Length: 735 Bit Score: 463.23 E-value: 2.02e-152
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 5 IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYE 84
Cdd:TIGR01062 1 IENIDLGNFTEEAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNANAKYKKSARTVGDVLGKYHPHGDSACYE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 85 AMVRLSQDWKLRHVLIEMYGNNGSIDN-DPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNL 163
Cdd:TIGR01062 81 AMVLMAQPFSYRYPLVDGQGNWGAPDDpKSFAAMRYTESRLSKISELLLEELGQGTVDFRPNFDGTLLEPVILPARLPNI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 164 LVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGI-IQGIDGIKKAYESGKGRIIVRSK 242
Cdd:TIGR01062 161 LLNGTTGIAVGMATDIPPHNLHELADAALYLIDNPKAGLDDILNIVQGPDFPTEAEiIDKAEEIRKIYETGRGSFRMRAR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 243 VEEETLrngrkQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTG-LRIAIELKKD-VNSESIKNYLYKNS 320
Cdd:TIGR01062 241 WKKEDG-----QIVISALPHQISKSKVIEQIAIQMKDKKLPMISDIRDESDHENpIRVVIVPRSNrVDPDIVMEHLFATT 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 321 DLQISYNFNMVAI-SDGRPKLMGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRsskNK 399
Cdd:TIGR01062 316 DLEKSYRLNMNMIgLDNVPAVKNLLEILQEWLVFRRNTVIRRLTYRLNKVLQRLHILEGLRIAFLNIDEVIEIIR---EE 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 400 RDAKENLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSER 479
Cdd:TIGR01062 393 DEPKTILMERFKLSAIQAEAILNLRLRHLAKLEEHAIIDEQSELEKERAILEKILKSERELNQLVKKEIQADATKYGLAR 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 480 LSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGvedIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYL 559
Cdd:TIGR01062 473 RSSLEEREEAKQVSEIDMIPKEPVTIILSKMGWVRSAKGHDIDLST---LKYKAGDSEKAIIEGKSNQKVVFIDSTGRSY 549
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 560 FIPVHKLADIRWKelGQHVSQIVPIEEDEVVINVFNEKD-----FNTDAFYVF-ATQNGMIKKstvplfktTRFNKPLIA 633
Cdd:TIGR01062 550 ALDPDNLPSARGQ--GEPLTGKLLLPIGATITNILMYSPnqlllMASDAGYGFlCNFNDLIAR--------NKAGKALIN 619
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 634 tkVKENDDLISVMRFEKD-QLITVITNKGMSLTYNTSELSDTGlRAAGVKSINLKAEDFVVMTEGVSEndtILMATQRGS 712
Cdd:TIGR01062 620 --LPENASVIAPLPVNGDsDMIAAITEAGRMLVFPIDDLPELS-KGKGNKLIRIPSANAKRGEDGLLD---LKIFNKQDG 693
|
730 740 750
....*....|....*....|....*....|....*...
gi 1468255912 713 L------KRISFK--ILQ--VAKRAQRGITLLKELKKN 740
Cdd:TIGR01062 694 LswndgkRKIQLEpeELQkfLGERGRFGTTLPRGLPKN 731
|
|
| PRK09631 |
PRK09631 |
DNA topoisomerase IV subunit A; Provisional |
10-668 |
1.66e-66 |
|
DNA topoisomerase IV subunit A; Provisional
Pssm-ID: 236598 [Multi-domain] Cd Length: 635 Bit Score: 233.06 E-value: 1.66e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 10 LEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYssgNTHDKNFRKSAKTVGDVIgQYHPHGDSSVYEAMVRL 89
Cdd:PRK09631 4 IKTLFKDNFLQYASYVIKDRAIPDVIDGLKPVQRRILHSLF---EMHDGKFHKVANVVGNTM-KYHPHGDASIYEALVNL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 90 SQdwklRHVLIEMYGNNGSI-DNDPPAAMRYTEAKLSLLAEELLrdINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGS 168
Cdd:PRK09631 80 AN----KDLFIDKQGNFGNLfTGDPASAARYIECRLTPLAKEVL--YNKEITEYEPSYDGRNNEPLCLPAKIPVILIQGA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 169 TGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNqlmkyikgPDFPTGGIIQGidgikKAYESGKGRIIVRSKVEEETl 248
Cdd:PRK09631 154 EGIAVGMATKILPHNFNEILQAVKSELLGESFALY--------PDFPTGGIVDV-----SEYADGNGKVLVRAKIETKD- 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 249 rngRKQLIITEIPYEVNKSSLVKRIDE-LRADK-KVDGIvevrdeTDRTGLRIAIELK--KDVNSESIKNYLYKNSDLQI 324
Cdd:PRK09631 220 ---EKTIVIREIPFGTTTESLIASIEKaARKGKiKISSI------NDYTAENVEIEIKlpRGVYASEVIEALYAYTDCEV 290
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 325 SYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHivEGLIKALSI---LDKVIELIRSSKNKRD 401
Cdd:PRK09631 291 SISVNLLVIKDRYPVIYTVTDIIKFHAEHLQKVLKMELELERAKLLEKIF--AKTLEQIFIeerIYKRIETISSEEDVIS 368
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 402 A--------KENLIEvyEFTEEQAEAIVMLQLYRLTNTDIvalEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKK 473
Cdd:PRK09631 369 IvlselkpfKEELSR--DVTEEDIENLLKIPIRRISLFDI---DKNQKEIRILNKELKSVEKNLKSIKGYAINFIDKLLA 443
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 474 KFKSE-----RLSLIeaeieeikidKEVMVpsEEVILSMTRHGYIKRTsirsfnasGVEDIGLKDGDSLLkhqEVNTQDT 548
Cdd:PRK09631 444 KYSKEyprktEISLI----------KSVDV--REIATKNLKVYYDLKT--------GFVGTSVKDGEFIG---NASYYDK 500
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 549 VLVFTNKGRYLFIPVhklADIRWKELGQHVSQIVPIEE-DEVVINV--------------FNEKDFNTDAFYVFATQNgm 613
Cdd:PRK09631 501 ILVIRKDGTYVVKNI---PDKTFIDKKNVYVGVVDINNsKEQVFSIiyrdkkdnfyyvkrFKIDKFILDKVYRFLPEG-- 575
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 1468255912 614 ikksTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQ-LITVITNKGMSLTYNT 668
Cdd:PRK09631 576 ----TEILFLSTFEDFSLNLQFVPKPRQKDIVKMFRIDDfLVKGRSAIGKRISSRE 627
|
|
| PRK12758 |
PRK12758 |
DNA gyrase/topoisomerase IV subunit A; |
16-473 |
6.98e-55 |
|
DNA gyrase/topoisomerase IV subunit A;
Pssm-ID: 237192 [Multi-domain] Cd Length: 869 Bit Score: 203.70 E-value: 6.98e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 16 DRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYssgNTHDKNFRKSAKTVGDVIgQYHPHGDSSVYEAMVRLSQdwkl 95
Cdd:PRK12758 29 NWFLDYASYVILERAVPHIEDGLKPVQRRILHSMK---EMDDGRYNKVANVVGHTM-QYHPHGDASIGDALVQLGQ---- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 96 RHVLIEMYGNNGSI-DNDPPAAMRYTEAKLSLLAEELLrdINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAG 174
Cdd:PRK12758 101 KDLLIDTQGNWGNIlTGDGAAAPRYIEARLSKFALEVV--FNPKTTEWQLSYDGRKKEPVTLPVKFPLLLAQGAEGIAVG 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 175 YATDIPPHNLAEVIQATLKYIDNPDITVnqlmkYikgPDFPTGGIIQGIdgikkAYESGK--GRIIVRSKVEEETlrngR 252
Cdd:PRK12758 179 LSTKILPHNFNELIDASIAYLKGKEFKL-----Y---PDFPTGGIIDVS-----NYNDGErgGRVRVRAKIEKLD----K 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 253 KQLIITEIPYEVNKSSLVKRIdeLRADKKvdGIVEVRDETDRT--GLRIAIELKKDVNSESIKNYLYKNSDLQISYNFNM 330
Cdd:PRK12758 242 KTLVITEIPYGTTTSSLIDSI--LKANDK--GKIKIKKVEDNTaaDVEILVHLAPGVSPDKTIDALYAFTDCEVSISPNA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 331 VAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHiveglikaLSILDKV-IElirssknKRDAKEnlIEV 409
Cdd:PRK12758 318 CVIIDNKPHFLGVSDILRRSTDHTVSLLKQELEIRLSELEEQWH--------FASLEKIfIE-------ERIYKE--IEE 380
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1468255912 410 YEFTEEQAEAI------VMLQLYR-LTNTDIVALegehkeLEALIKQ-LRHILDNHDALLNVIKEELNEIKK 473
Cdd:PRK12758 381 AETWEAVIEAIdkglepFKKQFIReVTEDDIVRL------TEIKIKRiSKFDSDKADELIARLEAEIAEVKH 446
|
|
| PRK09630 |
PRK09630 |
DNA topoisomerase IV subunit A; Provisional |
5-366 |
3.05e-43 |
|
DNA topoisomerase IV subunit A; Provisional
Pssm-ID: 170022 Cd Length: 479 Bit Score: 163.91 E-value: 3.05e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 5 IQDLSleDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSsgnTHDKNFRKSAKTVGDVIGqYHPHGDSSVYE 84
Cdd:PRK09630 1 MSDVS--DLFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFR---MDDGKMHKVANIAGRTMA-LHPHGDAPIVE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 85 AMVRLSQdwklRHVLIEMYGNNGS-IDNDPPAAMRYTEAKLSLLAEELLrdINKETVSFIPNYDDTTLEPMVLPSRFPNL 163
Cdd:PRK09630 75 ALVVLAN----KGYLIDTQGNFGNpLTGDPHAAARYIEARLSPLAKEVL--FNTDLMTFHDSYDGREKEPDILPAKLPLL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 164 LVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNqlmkyikgPDFPTGGIIQGIDgikkaYESGKGRIIVRSKV 243
Cdd:PRK09630 149 LLHGVDGIAVGMTTKIFPHNFCELLEAQIAILNDQPFTLL--------PDFPSGGTMDASE-----YQDGLGSITLRASI 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 244 EEETlrngRKQLIITEIPYEVNKSSLVKRIDEL--RADKKVDGIVEVrdETDRTglRIAIELKKDVNSESIKNYLYKNSD 321
Cdd:PRK09630 216 DIIN----DKTLLIKEICPSTTTETLIRSIENAakRGIIKIDSIQDF--STDLP--HIEIKLPKGIYAKDLLRPLFTHTE 287
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1468255912 322 LQISYNFNMVAISDGRPKLMGIRQIidsyLNHQIEVVANRTKFEL 366
Cdd:PRK09630 288 CQVILTSRPTAIYQNKPVETSISEI----LRLHTETLQGYLKKEL 328
|
|
| 52 |
PHA02592 |
DNA topisomerase II medium subunit; Provisional |
9-473 |
3.84e-42 |
|
DNA topisomerase II medium subunit; Provisional
Pssm-ID: 222896 [Multi-domain] Cd Length: 439 Bit Score: 159.45 E-value: 3.84e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 9 SLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDV-IGQYHpHGDSSVYEAMV 87
Cdd:PHA02592 7 SLKSIVNNEALEYAMYTVEERAIPNLIDGLKPVQRFVIHRALEYAKGNKEKFDKVAAIAGGVaDLGYH-HGETSAQDAGA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 88 RLSQDWKLRHVLIEMYGNNGSIDNDPPAAMRYTEAKLSllaeELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNG 167
Cdd:PHA02592 86 LMANTWNNNIPLLDGQGNFGSRLVQKAAAARYIFARVH----DNFRKIYKDEDLAPVHEDPEHIPPAFYLPIIPMVLLNG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 168 STGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQlmkyIKGPDFptggiiqgidgIKKAYESGKGRIIVRSKVEeet 247
Cdd:PHA02592 162 VSGIATGYATNILPHSPKSVIKAVLAALNGKDITEPK----VQFPEF-----------KGEVVEIEPGSYEIRGTYE--- 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 248 lRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKvdgIVEVRDETDRtGLRIAIELKKDVNSESIKNYLYKNSDLQISYN 327
Cdd:PHA02592 224 -LNGKTKLHITEIPVKYDRETYVAVLDPLEEKGK---IVSYDDCTED-GFRFKVTLKREENEEATHEKIMKDFGLIERVS 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 328 FNMVAIS-DGRPKLM-GIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHIVegLIKALSIlDKVIELIRSSKNK-RDAKE 404
Cdd:PHA02592 299 QNITVINeNGKLKVYeNAEDLIRDFVEIRKTYVQKRIQYEIKETEEAFDLA--LAKAEFI-KRVIAGEIVLQGKtRSELT 375
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1468255912 405 NLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEaliKQLRHILDNHDalLNVIKEELNEIKK 473
Cdd:PHA02592 376 EELSDNKDFGEYADKLVAMNIYSMTSDEREKLQKEAEELE---KEHEYWKKTTA--KKEYIKDLEELKK 439
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
28-481 |
4.99e-18 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 89.34 E-value: 4.99e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 28 ERALPDVRDGLKPVQRRILYAMYSsgnthdKNFRKSAKtVGDVIG------QYHpHGDSSVYEAMVRLSQDWklrhV--- 98
Cdd:PTZ00108 679 ERSIPSLVDGLKPGQRKILFACFK------RNLKNEIK-VAQLSGyvsehsAYH-HGEQSLQQTIVGMAQNF----Vgsn 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 99 ---LIEMYGNNGS---IDNDPPAAmRYTEAKLSLLAeellRDINKETVSFIPNY---DDTTLEPMVLPSRFPNLLVNGST 169
Cdd:PTZ00108 747 ninLLYPCGQFGSrlqGGKDHAAA-RYIFTKLSKIT----RYIFPEEDDPILDYledDGQSVEPFYYVPIIPMVLVNGAE 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 170 GISAGYATDIPPHNLAEVIQatlkyidnpditvnQLMKYIKGPDFPTggiiqgidgIKKAYESGKGRIIVRSKVEEETL- 248
Cdd:PTZ00108 822 GIGTGFSTSIPNYNPLDIID--------------NLRRRLNGEEVRP---------LVPWYRGFKGTIERNPKGKFISKg 878
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 249 ---RNGRKQLIITEIP--------------YEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIE--------- 302
Cdd:PTZ00108 879 iyeKVPDGTVEITELPigkwtedykeflesETLKEKDVIVDYRDYSTANTVHFTVKLNDGVLEQWEEEGIEkvfklksti 958
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 303 -------------LKKDVNSESI---------------KNYLYKNSDLQISYNFNMVAIsdgrpklmgIRQIIDSYLnhq 354
Cdd:PTZ00108 959 sttnmvlfdengkIKKYSDALDIlkefylvrldlykkrKEYLLGKLERELARLSNKVRF---------IKHVINGEL--- 1026
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 355 ieVVANRTKFELDNAEKRMHIV--EGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEqAEAIVMLQLYRLTNTD 432
Cdd:PTZ00108 1027 --VITNAKKKDLVKELKKLGYVrfKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVS-YDYLLSMPIWSLTKEK 1103
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 1468255912 433 IVALEGEHKELEALIKQLRHI------LDNHDALLNVIKEELN-EIKKKFKSERLS 481
Cdd:PTZ00108 1104 VEKLNAELEKKEKELEKLKNTtpkdmwLEDLDKFEEALEEQEEvEEKEIAKEQRLK 1159
|
|
| PLN03128 |
PLN03128 |
DNA topoisomerase 2; Provisional |
21-381 |
4.78e-12 |
|
DNA topoisomerase 2; Provisional
Pssm-ID: 215593 [Multi-domain] Cd Length: 1135 Bit Score: 69.74 E-value: 4.78e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 21 YSKYIIqERALPDVRDGLKPVQRRILYAMYSsgnthdKNFRKSAKtVGDVIG------QYHpHGDSSVYEAMVRLSQDWk 94
Cdd:PLN03128 666 FSQADL-ARSIPSMVDGLKPSQRKVLFACFK------RNLKSEIK-VAQLSGyvaehsAYH-HGEASLASTIIGMAQDF- 735
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 95 lrhvliemYGNN----------------GSIDNdppAAMRYTEAKLSLLAEELLRDINKETVSFIpNYDDTTLEPMVLPS 158
Cdd:PLN03128 736 --------VGSNninlltpsgqfgtrlqGGKDA---ASARYIFTRLSPITRALFPKDDDVLLNYL-NEDGQSIEPEWYCP 803
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 159 RFPNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITvnQLMKYIKGpdfptggiiqGIDGIKKAYESGKGRII 238
Cdd:PLN03128 804 IIPMVLVNGSEGIGTGWSTFIPNYNPRDIIANIRRLLRGEELE--PMHPWYRG----------FKGTITEVSTSRSGSYT 871
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 239 VRSKVEeetlRNGRKQLIITEIPYEVNKSSLVKRIDELRA--DKKVDGIVEVRDETDRTGLRIAIELKKDVNSESIKNYL 316
Cdd:PLN03128 872 VTGIIE----QIGDTTIRITELPVRKWTQDYKEFLEALLTgtKKKEPEIKDFKENHTDTTVHFTVTLSEEKMARALAEGL 947
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1468255912 317 YKNSDLQ--ISYNfNMVAIS-DGR-PKLMGIRQIIDSYLNHQIEVVANRT-------KFELDNAEKRMHIVEGLIK 381
Cdd:PLN03128 948 EKKFKLSttISTS-NMHLFDkDGKiKKYDSPEDILEEFFHLRLDLYVKRKevllenlEYELKKLDNKARFILAVVK 1022
|
|
| PLN03237 |
PLN03237 |
DNA topoisomerase 2; Provisional |
20-188 |
1.40e-09 |
|
DNA topoisomerase 2; Provisional
Pssm-ID: 215641 [Multi-domain] Cd Length: 1465 Bit Score: 61.80 E-value: 1.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 20 RYSKYIIQE----------RALPDVRDGLKPVQRRILYAMYSsgnthdKNFRKSAKtVGDVIG------QYHpHGDSSVY 83
Cdd:PLN03237 679 KYSDFVNKElilfsmadlqRSIPSMVDGLKPGQRKILFCSFK------RNFVKEAK-VAQLSGyvsehsAYH-HGEQSLA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 84 EAMVRLSQDWKLRHVLIEMYGN-------NGSIDNdppAAMRYTEAKLSLLAEELLRDINKETVSFIpNYDDTTLEPMVL 156
Cdd:PLN03237 751 STIIGMAQDFVGSNNINLLLPNgqfgtrlQGGKDH---ASARYIFTRLSPITRFLFPKDDDILLDYL-NEDGQSIEPTWY 826
|
170 180 190
....*....|....*....|....*....|..
gi 1468255912 157 PSRFPNLLVNGSTGISAGYATDIPPHNLAEVI 188
Cdd:PLN03237 827 MPIIPTVLVNGAEGIGTGWSTFIPNYNPRDIV 858
|
|
| DNA_gyraseA_C |
pfam03989 |
DNA gyrase C-terminal domain, beta-propeller; This repeat is found as 6 tandem copies at the ... |
652-693 |
2.49e-03 |
|
DNA gyrase C-terminal domain, beta-propeller; This repeat is found as 6 tandem copies at the C-termini of GyrA and ParC DNA gyrases. It is predicted to form 4 beta strands and to probably form a beta-propeller structure. This region has been shown to bind DNA non-specifically and may stabilize the DNA-topoisomerase complex.
Pssm-ID: 427633 [Multi-domain] Cd Length: 48 Bit Score: 36.31 E-value: 2.49e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1468255912 652 QLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVV 693
Cdd:pfam03989 1 DELLLITSKGYVKRTPLSEIREQGRGAKGVKGINLKEGDKVV 42
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
351-476 |
2.67e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 41.36 E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 351 LNHQI-EVVANRTKFELDNAEKRMHIVEGLIKAL-SILDKVIelirssKNKRDAKENLIEVYEFTEEQAEAIVMLQL--- 425
Cdd:PRK04778 261 LKEQIdENLALLEELDLDEAEEKNEEIQERIDQLyDILEREV------KARKYVEKNSDTLPDFLEHAKEQNKELKEeid 334
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1468255912 426 -----YRLTNTDIVALEGEHKELEALIKQLRHI---LDNHDALLNVIKEELNEIKKKFK 476
Cdd:PRK04778 335 rvkqsYTLNESELESVRQLEKQLESLEKQYDEIterIAEQEIAYSELQEELEEILKQLE 393
|
|
| DNA_gyraseA_C |
pfam03989 |
DNA gyrase C-terminal domain, beta-propeller; This repeat is found as 6 tandem copies at the ... |
702-750 |
8.36e-03 |
|
DNA gyrase C-terminal domain, beta-propeller; This repeat is found as 6 tandem copies at the C-termini of GyrA and ParC DNA gyrases. It is predicted to form 4 beta strands and to probably form a beta-propeller structure. This region has been shown to bind DNA non-specifically and may stabilize the DNA-topoisomerase complex.
Pssm-ID: 427633 [Multi-domain] Cd Length: 48 Bit Score: 35.16 E-value: 8.36e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1468255912 702 DTILMATQRGSLKRISFKILQVAKRAQRGITLLKeLKKNpHRIVAAHVV 750
Cdd:pfam03989 1 DELLLITSKGYVKRTPLSEIREQGRGAKGVKGIN-LKEG-DKVVSVLVV 47
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
341-474 |
9.55e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 39.45 E-value: 9.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1468255912 341 MGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKAL-SILDKVIElirsskNKRDAKENLIEVYEFTEEQAEA 419
Cdd:pfam06160 233 LNVDKEIQQLEEQLEENLALLENLELDEAEEALEEIEERIDQLyDLLEKEVD------AKKYVEKNLPEIEDYLEHAEEQ 306
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1468255912 420 IVMLQL--------YRLTNTDIVALEGEHKELEALIKQ---LRHILDNHDALLNVIKEELNEIKKK 474
Cdd:pfam06160 307 NKELKEelervqqsYTLNENELERVRGLEKQLEELEKRydeIVERLEEKEVAYSELQEELEEILEQ 372
|
|
| |
