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Conserved domains on  [gi|1469311795|ref|WP_117652963|]
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MULTISPECIES: hypothetical protein, partial [Bacteroidaceae]

Protein Classification

kinetochore Spc7 family protein( domain architecture ID 1016109)

kinetochore Spc7 family protein (also known as KNL1, Spc105 and Blinkin) is part of the Ndc80-MIND-Spc7 complex which plays a vital role at the microtubule kinetochore interface, ensuring proper chromosome segregation

Gene Ontology:  GO:0000776|GO:0051301

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Spc7 super family cl33249
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ...
 144-231 1.12e-04

Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.


The actual alignment was detected with superfamily member smart00787:

Pssm-ID: 197874 [Multi-domain]  Cd Length: 312  Bit Score: 42.70  E-value: 1.12e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469311795  144 MERIPSIIDQYKAKNEVLEMEIPQLQEIAGKVWK-KEDELKQLKSELAALDRKIQLELApptpEVAEKENEGQQLKPEAE 222
Cdd:smart00787 167 LELLNSIKPKLRDRKDALEEELRQLKQLEDELEDcDPTELDRAKEKLKKLLQEIMIKVK----KLEELEEELQELESKIE 242


                   ....*....
gi 1469311795  223 DVRNRQAQY 231
Cdd:smart00787 243 DLTNKKSEL 251
 
Name Accession Description Interval E-value
Spc7 smart00787
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ...
 144-231 1.12e-04

Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.


Pssm-ID: 197874 [Multi-domain]  Cd Length: 312  Bit Score: 42.70  E-value: 1.12e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469311795  144 MERIPSIIDQYKAKNEVLEMEIPQLQEIAGKVWK-KEDELKQLKSELAALDRKIQLELApptpEVAEKENEGQQLKPEAE 222
Cdd:smart00787 167 LELLNSIKPKLRDRKDALEEELRQLKQLEDELEDcDPTELDRAKEKLKKLLQEIMIKVK----KLEELEEELQELESKIE 242


                   ....*....
gi 1469311795  223 DVRNRQAQY 231
Cdd:smart00787 243 DLTNKKSEL 251
 
Name Accession Description Interval E-value
Spc7 smart00787
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ...
 144-231 1.12e-04

Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.


Pssm-ID: 197874 [Multi-domain]  Cd Length: 312  Bit Score: 42.70  E-value: 1.12e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469311795  144 MERIPSIIDQYKAKNEVLEMEIPQLQEIAGKVWK-KEDELKQLKSELAALDRKIQLELApptpEVAEKENEGQQLKPEAE 222
Cdd:smart00787 167 LELLNSIKPKLRDRKDALEEELRQLKQLEDELEDcDPTELDRAKEKLKKLLQEIMIKVK----KLEELEEELQELESKIE 242


                   ....*....
gi 1469311795  223 DVRNRQAQY 231
Cdd:smart00787 243 DLTNKKSEL 251
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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