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Conserved domains on  [gi|1473431446|ref|WP_117892131|]
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MULTISPECIES: zinc ribbon domain-containing protein [Ruminococcus]

Protein Classification

zinc ribbon domain-containing protein( domain architecture ID 12119914)

zinc ribbon domain-containing protein consists of a pair of zinc ribbon domains; similar to Bacillus subtilis protein YvbI

Gene Ontology:  GO:0008270
PubMed:  32851833

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DZR pfam12773
Double zinc ribbon; This family consists of a pair of zinc ribbon domains.
 4-53 1.51e-10

Double zinc ribbon; This family consists of a pair of zinc ribbon domains.


:

Pssm-ID: 432773 [Multi-domain]  Cd Length: 45  Bit Score: 55.07  E-value: 1.51e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1473431446   4 CPKCGLPVADGAKFCAACGTRmpqklIKSKVCSVCGNTLNAGAKFCNVCG 53
Cdd:pfam12773   1 CPNCGHPNPPGAKFCPACGTP-----LKPDRCPNCGAPVPPNARFCPYCG 45
YvbJ super family cl26236
Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];
33-80 1.95e-03

Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];


The actual alignment was detected with superfamily member COG4640:

Pssm-ID: 443678 [Multi-domain]  Cd Length: 445  Bit Score: 38.98  E-value: 1.95e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1473431446  33 KVCSVCGNTLNAGAKFCNVCGTAVPQDETPADEPVVDERNPEMESIEV 80
Cdd:COG4640     2 KFCPNCGHKLEDGVKFCPNCGTPLTSKVKQARQAKQKQAQSAVSNTAV 49
PRK10263 super family cl35903
DNA translocase FtsK; Provisional
 56-185 2.56e-03

DNA translocase FtsK; Provisional


The actual alignment was detected with superfamily member PRK10263:

Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 39.30  E-value: 2.56e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473431446   56 VPQDETPADEPVVDERnpEMESIEVPELHFDDTPvqnQTIPPTTPDMPTMDSVYLPGQEPAKPVQPA-QPTAEEVAMASR 134
Cdd:PRK10263   346 VASVDVPPAQPTVAWQ--PVPGPQTGEPVIAPAP---EGYPQQSQYAQPAVQYNEPLQQPVQPQQPYyAPAAEQPAQQPY 420

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1473431446  135 TVEIPQTPTVAETPNVAPQS----------QPERVLTPEGYQQPAQPVNNAMPQMNQGGQP 185
Cdd:PRK10263   421 YAPAPEQPAQQPYYAPAPEQpvagnawqaeEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQP 481
 
Name Accession Description Interval E-value
DZR pfam12773
Double zinc ribbon; This family consists of a pair of zinc ribbon domains.
 4-53 1.51e-10

Double zinc ribbon; This family consists of a pair of zinc ribbon domains.


Pssm-ID: 432773 [Multi-domain]  Cd Length: 45  Bit Score: 55.07  E-value: 1.51e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1473431446   4 CPKCGLPVADGAKFCAACGTRmpqklIKSKVCSVCGNTLNAGAKFCNVCG 53
Cdd:pfam12773   1 CPNCGHPNPPGAKFCPACGTP-----LKPDRCPNCGAPVPPNARFCPYCG 45
YvbJ COG4640
Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];
1-23 7.97e-04

Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];


Pssm-ID: 443678 [Multi-domain]  Cd Length: 445  Bit Score: 40.52  E-value: 7.97e-04
                          10        20
                  ....*....|....*....|...
gi 1473431446   1 MENCPKCGLPVADGAKFCAACGT 23
Cdd:COG4640     1 MKFCPNCGHKLEDGVKFCPNCGT 23
YvbJ COG4640
Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];
33-80 1.95e-03

Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];


Pssm-ID: 443678 [Multi-domain]  Cd Length: 445  Bit Score: 38.98  E-value: 1.95e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1473431446  33 KVCSVCGNTLNAGAKFCNVCGTAVPQDETPADEPVVDERNPEMESIEV 80
Cdd:COG4640     2 KFCPNCGHKLEDGVKFCPNCGTPLTSKVKQARQAKQKQAQSAVSNTAV 49
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 56-185 2.56e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 39.30  E-value: 2.56e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473431446   56 VPQDETPADEPVVDERnpEMESIEVPELHFDDTPvqnQTIPPTTPDMPTMDSVYLPGQEPAKPVQPA-QPTAEEVAMASR 134
Cdd:PRK10263   346 VASVDVPPAQPTVAWQ--PVPGPQTGEPVIAPAP---EGYPQQSQYAQPAVQYNEPLQQPVQPQQPYyAPAAEQPAQQPY 420

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1473431446  135 TVEIPQTPTVAETPNVAPQS----------QPERVLTPEGYQQPAQPVNNAMPQMNQGGQP 185
Cdd:PRK10263   421 YAPAPEQPAQQPYYAPAPEQpvagnawqaeEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQP 481
 
Name Accession Description Interval E-value
DZR pfam12773
Double zinc ribbon; This family consists of a pair of zinc ribbon domains.
 4-53 1.51e-10

Double zinc ribbon; This family consists of a pair of zinc ribbon domains.


Pssm-ID: 432773 [Multi-domain]  Cd Length: 45  Bit Score: 55.07  E-value: 1.51e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1473431446   4 CPKCGLPVADGAKFCAACGTRmpqklIKSKVCSVCGNTLNAGAKFCNVCG 53
Cdd:pfam12773   1 CPNCGHPNPPGAKFCPACGTP-----LKPDRCPNCGAPVPPNARFCPYCG 45
zinc_ribbon_2 pfam13240
zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as ...
 4-23 1.86e-04

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.


Pssm-ID: 433054 [Multi-domain]  Cd Length: 21  Bit Score: 37.87  E-value: 1.86e-04
                          10        20
                  ....*....|....*....|
gi 1473431446   4 CPKCGLPVADGAKFCAACGT 23
Cdd:pfam13240   2 CPNCGAENPDGAKFCPKCGA 21
YvbJ COG4640
Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];
1-23 7.97e-04

Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];


Pssm-ID: 443678 [Multi-domain]  Cd Length: 445  Bit Score: 40.52  E-value: 7.97e-04
                          10        20
                  ....*....|....*....|...
gi 1473431446   1 MENCPKCGLPVADGAKFCAACGT 23
Cdd:COG4640     1 MKFCPNCGHKLEDGVKFCPNCGT 23
zf-ribbon_3 pfam13248
zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as ...
 3-25 1.59e-03

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.


Pssm-ID: 404185 [Multi-domain]  Cd Length: 25  Bit Score: 35.25  E-value: 1.59e-03
                          10        20
                  ....*....|....*....|...
gi 1473431446   3 NCPKCGLPVADGAKFCAACGTRM 25
Cdd:pfam13248   3 RCPNCGAPVSPDDNVCPYCGTKL 25
YvbJ COG4640
Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];
33-80 1.95e-03

Uncharacterized protein YvbJ, contains N-terminal Zn ribbon domain [Function unknown];


Pssm-ID: 443678 [Multi-domain]  Cd Length: 445  Bit Score: 38.98  E-value: 1.95e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1473431446  33 KVCSVCGNTLNAGAKFCNVCGTAVPQDETPADEPVVDERNPEMESIEV 80
Cdd:COG4640     2 KFCPNCGHKLEDGVKFCPNCGTPLTSKVKQARQAKQKQAQSAVSNTAV 49
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 56-185 2.56e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 39.30  E-value: 2.56e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473431446   56 VPQDETPADEPVVDERnpEMESIEVPELHFDDTPvqnQTIPPTTPDMPTMDSVYLPGQEPAKPVQPA-QPTAEEVAMASR 134
Cdd:PRK10263   346 VASVDVPPAQPTVAWQ--PVPGPQTGEPVIAPAP---EGYPQQSQYAQPAVQYNEPLQQPVQPQQPYyAPAAEQPAQQPY 420

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1473431446  135 TVEIPQTPTVAETPNVAPQS----------QPERVLTPEGYQQPAQPVNNAMPQMNQGGQP 185
Cdd:PRK10263   421 YAPAPEQPAQQPYYAPAPEQpvagnawqaeEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQP 481
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 86-188 3.72e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 38.53  E-value: 3.72e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473431446   86 DDTPVQNQTIPPTTPD-----MPTMDSVYLPGQEPAKPV----QPAQPTAEevamaSRTVEIPQTPTVAETPNVAPQsQP 156
Cdd:PRK10263   737 DDGPHEPLFTPIVEPVqqpqqPVAPQQQYQQPQQPVAPQpqyqQPQQPVAP-----QPQYQQPQQPVAPQPQYQQPQ-QP 810

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1473431446  157 erVLTPEGYQQPAQPVnNAMPQMNQGGQPIQP 188
Cdd:PRK10263   811 --VAPQPQYQQPQQPV-APQPQYQQPQQPVAP 839
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 99-193 4.28e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 38.53  E-value: 4.28e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473431446   99 TPDMPTMDSVYLPGQEPAKPV--QPAQPTAEEVAMASRTVEIPQTPtvaetpnVAPQSQPERVLTPEG----YQQPAQPV 172
Cdd:PRK10263   739 GPHEPLFTPIVEPVQQPQQPVapQQQYQQPQQPVAPQPQYQQPQQP-------VAPQPQYQQPQQPVApqpqYQQPQQPV 811

                           90       100
                   ....*....|....*....|.
gi 1473431446  173 NnAMPQMNQGGQPIQPNQMNQ 193
Cdd:PRK10263   812 A-PQPQYQQPQQPVAPQPQYQ 831
COG2888 COG2888
Predicted RNA-binding protein involved in translation, contains Zn-ribbon domain, DUF1610 ...
 3-57 5.15e-03

Predicted RNA-binding protein involved in translation, contains Zn-ribbon domain, DUF1610 family [General function prediction only];


Pssm-ID: 442134 [Multi-domain]  Cd Length: 52  Bit Score: 34.32  E-value: 5.15e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1473431446   3 NCPKCGLPVA---DGAKFCAACGTRMPqkliksKVCSVCGNTLNAGaKFCNVCGTAVP 57
Cdd:COG2888     2 VCPSCGREIApegGVAFYCPNCGEALI------IRCPKCRKQSNAL-YFCPKCGFEGP 52
PHA03247 PHA03247
large tegument protein UL36; Provisional
 53-188 6.29e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 38.00  E-value: 6.29e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473431446   53 GTAVPQDETPADEPVVDERNPEMESIEVPElhfdDTPVQNQTIPPTTPDMPTMDSVYLPGQEPAKPVQPAQPTAEEVAMA 132
Cdd:PHA03247  2747 GPATPGGPARPARPPTTAGPPAPAPPAAPA----AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAA 2822

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1473431446  133 SRTVEIPQTPTVAETPNVAPQSQPERVLTPEGYQQPAQPVNNAMPQMNQGGQPIQP 188
Cdd:PHA03247  2823 SPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAP 2878
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
 56-199 6.68e-03

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 37.64  E-value: 6.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473431446  56 VPQDETPADEPVVDERNPEMESIEVPELHFDDTPVQNQTIP--PTTPDM--PTMDSVylPGQEPAKPVQPAQP--TAEEV 129
Cdd:PTZ00441  298 TPEDDNPRPTDDEFAVPNFNEGLDVPDNPQDPVPPPNEGKDgnPNEENLfpPGDDEV--PDESNVPPNPPNVPggSNSEF 375

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1473431446 130 AMASRTVEIPQTPTVAE-TPNVAPQSQPErvlTPEGYqqpaqPVNNAMPQMNQGGQPIQP--NQMNQMNGVTP 199
Cdd:PTZ00441  376 SSDVENPPNPPNPDIPEqEPNIPEDSNKE---VPEDV-----PMEPEDDRDNNFNEPKKPenKGDGQNEPVIP 440
PHA03247 PHA03247
large tegument protein UL36; Provisional
 55-203 7.38e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 37.61  E-value: 7.38e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473431446   55 AVPQDETPADEPV-VDERNPEMESIEVPELHFDDTPVQNQTIPPTTPDMP----TMDSVYLPG----------QEPAKPV 119
Cdd:PHA03247  2797 SLPSPWDPADPPAaVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPppslPLGGSVAPGgdvrrrppsrSPAAKPA 2876

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473431446  120 QPAQPTAEEVAMAS------------------RTVEIPQTPTVAETPNVAPQSQPErVLTPEGYQQPAQPVNNAMPQmnq 181
Cdd:PHA03247  2877 APARPPVRRLARPAvsrstesfalppdqperpPQPQAPPPPQPQPQPPPPPQPQPP-PPPPPRPQPPLAPTTDPAGA--- 2952

                          170       180
                   ....*....|....*....|..
gi 1473431446  182 gGQPIQPNQMNQMNGVTPGKGA 203
Cdd:PHA03247  2953 -GEPSGAVPQPWLGALVPGRVA 2973
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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