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Conserved domains on  [gi|1474253702|ref|WP_118660171|]
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MULTISPECIES: glutamyl-tRNA amidotransferase [Clostridia]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SLATT_4 super family cl40294
SMODS and SLOG-associating 2TM effector domain family 4; The SLATT domain contains two ...
 9-104 6.09e-03

SMODS and SLOG-associating 2TM effector domain family 4; The SLATT domain contains two transmembrane helices. SLATT domains are generally predicted to function as pore-forming effectors in a class of conflict systems which are reliant on the production of second messenger nucleotide or nucleotide derivatives. SLATT domains are predicted to initiate cell suicide responses upon their activation. This SLATT family is often coupled to the SMODS nucleotide synthetase and is sometimes further embedded in other conflict systems like CRISPR/Cas or R-M systems.


The actual alignment was detected with superfamily member NF033632:

Pssm-ID: 477305  Cd Length: 154  Bit Score: 34.18  E-value: 6.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1474253702   9 RKQKKWMGLymTLVLIATVGTTTVFAAGDPLSVINNLSTFIFSLIRAiglILLGFgvvqvglsLKSHDPSQRANGFLTlA 88
Cdd:NF033632   24 RKYHLWLGI--PSIILSALTGTGVFASLGDEIWAKKLITGVLSLLAA---ILTAL--------QTFLNPSERAEKHRS-A 89

                          90
                  ....*....|....*.
gi 1474253702  89 GGVIITFAKEILDLIM 104
Cdd:NF033632   90 ANRYLALREKYLSLLL 105
 
Name Accession Description Interval E-value
SLATT_4 NF033632
SLATT domain; The SLATT domain contains two transmembrane helices. SLATT domains are generally ...
 9-104 6.09e-03

SLATT domain; The SLATT domain contains two transmembrane helices. SLATT domains are generally predicted to function as pore-forming effectors in a class of conflict systems which are reliant on the production of second messenger nucleotide or nucleotide derivatives. SLATT domains are predicted to initiate cell suicide responses upon their activation. This SLATT family is often coupled to the SMODS nucleotide synthetase and is sometimes further embedded in other conflict systems like CRISPR/Cas or R-M systems.


Pssm-ID: 468118  Cd Length: 154  Bit Score: 34.18  E-value: 6.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1474253702   9 RKQKKWMGLymTLVLIATVGTTTVFAAGDPLSVINNLSTFIFSLIRAiglILLGFgvvqvglsLKSHDPSQRANGFLTlA 88
Cdd:NF033632   24 RKYHLWLGI--PSIILSALTGTGVFASLGDEIWAKKLITGVLSLLAA---ILTAL--------QTFLNPSERAEKHRS-A 89

                          90
                  ....*....|....*.
gi 1474253702  89 GGVIITFAKEILDLIM 104
Cdd:NF033632   90 ANRYLALREKYLSLLL 105
 
Name Accession Description Interval E-value
SLATT_4 NF033632
SLATT domain; The SLATT domain contains two transmembrane helices. SLATT domains are generally ...
 9-104 6.09e-03

SLATT domain; The SLATT domain contains two transmembrane helices. SLATT domains are generally predicted to function as pore-forming effectors in a class of conflict systems which are reliant on the production of second messenger nucleotide or nucleotide derivatives. SLATT domains are predicted to initiate cell suicide responses upon their activation. This SLATT family is often coupled to the SMODS nucleotide synthetase and is sometimes further embedded in other conflict systems like CRISPR/Cas or R-M systems.


Pssm-ID: 468118  Cd Length: 154  Bit Score: 34.18  E-value: 6.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1474253702   9 RKQKKWMGLymTLVLIATVGTTTVFAAGDPLSVINNLSTFIFSLIRAiglILLGFgvvqvglsLKSHDPSQRANGFLTlA 88
Cdd:NF033632   24 RKYHLWLGI--PSIILSALTGTGVFASLGDEIWAKKLITGVLSLLAA---ILTAL--------QTFLNPSERAEKHRS-A 89

                          90
                  ....*....|....*.
gi 1474253702  89 GGVIITFAKEILDLIM 104
Cdd:NF033632   90 ANRYLALREKYLSLLL 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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