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Conserved domains on  [gi|1494962078|ref|WP_121691661|]
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ABC transporter permease [Agrobacterium fabrum]

Protein Classification

ABC transporter permease( domain architecture ID 11439530)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0140359|GO:0042626|GO:0016020
PubMed:  18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 18-262 7.44e-78

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


:

Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 236.16  E-value: 7.44e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  18 ITVLTSAFLILPIVFIAALSFGSSQWLIFPPPGWTLKWYADFFADPRWLEAAWTSLRIALMVTVLSVLIGLVASFGLVRG 97
Cdd:COG1177    12 FLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARY 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  98 RFLGRGTLCALFMTPMILPVVVLAVALYAFFLKLGLAGTTTGFVIAHLVVALPFSILALTGALEGFDKSIEDAAVLCGAS 177
Cdd:COG1177    92 RFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGAS 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 178 PLQAKIRITLPAISHGLFSAAIFSFLTSWDEVVLAIFMASPTLQTLPVKIWATLRQDLTPVIAAASTLLIAVTIILMLLV 257
Cdd:COG1177   172 PWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALSTLLILLSLLLLLLA 251


                  ....*
gi 1494962078 258 AAVRK 262
Cdd:COG1177   252 ERLRR 256
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 18-262 7.44e-78

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 236.16  E-value: 7.44e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  18 ITVLTSAFLILPIVFIAALSFGSSQWLIFPPPGWTLKWYADFFADPRWLEAAWTSLRIALMVTVLSVLIGLVASFGLVRG 97
Cdd:COG1177    12 FLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARY 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  98 RFLGRGTLCALFMTPMILPVVVLAVALYAFFLKLGLAGTTTGFVIAHLVVALPFSILALTGALEGFDKSIEDAAVLCGAS 177
Cdd:COG1177    92 RFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGAS 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 178 PLQAKIRITLPAISHGLFSAAIFSFLTSWDEVVLAIFMASPTLQTLPVKIWATLRQDLTPVIAAASTLLIAVTIILMLLV 257
Cdd:COG1177   172 PWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALSTLLILLSLLLLLLA 251


                  ....*
gi 1494962078 258 AAVRK 262
Cdd:COG1177   252 ERLRR 256
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 24-256 7.12e-32

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 117.78  E-value: 7.12e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  24 AFLILPIVFIAALSFGSSQWLIfPPPGWTLKWYADFFADPRWLEAAWTSLRIALMVTVLSVLIGLVASFGLVRGRFLGRG 103
Cdd:PRK09500   15 AYLYIPIIILIVNSFNSSRFGI-NWKGFTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKK 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 104 TLCALFMTPMILPVVVLAVALYAFFLKLGLagtTTGFV---IAHLVVALPFSILALTGALEGFDKSIEDAAVLCGASPLQ 180
Cdd:PRK09500   94 FVSGMLFVVMMSPDIVMAISLLVLFMLLGI---QLGFWsllFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFT 170

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1494962078 181 AKIRITLPAISHGLFSAAIFSFLTSWDEVVLAIFMASPTLQTLPVKIWATLRQDLTPVIAAASTLLIAVTIILMLL 256
Cdd:PRK09500  171 ILRKIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGPSYEILPLKIYSMVKVGVSPEVNALATILLVLSLVLVIL 246
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 70-257 2.22e-19

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 83.45  E-value: 2.22e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  70 WTSLRIALMVTVLSVLIGLVASFGLVRGRFLGRGTLCALFMTPMILPVVVLAVALYAFFLKLGLAG------------TT 137
Cdd:TIGR02141   1 WLSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGkllelfgislvfTF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 138 TGFVIAHLVVALPFSILALTGALEGFDKSIEDAAVLCGASPLQAKIRITLPAISHGLFSAAIFSFLTSWDEVVLAIFMAS 217
Cdd:TIGR02141  81 TGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFAG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1494962078 218 P---TLQTLPVKIWATLRQDLTPViAAASTLLIAVTIILMLLV 257
Cdd:TIGR02141 161 NipgETQTIPLAIYDAVESDYELA-HQLSLVLLAISLIVLLLV 202
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 69-252 4.37e-10

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 57.67  E-value: 4.37e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  69 AWTSLRIALMVTVLSVLIGLVASFGLVRGRFLGRGTLCALFMTPMILPVVVLAVALYAFFLKLGLAGTTTGF----VIAH 144
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLglpaLILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 145 LVVALPFSILALTGALEGFDKSIEDAAVLCGASPLQAKIRITLPAISHGLFSAAIFSFLTSWDEVVLAIFMASPTLQTLP 224
Cdd:cd06261    81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                         170       180
                  ....*....|....*....|....*...
gi 1494962078 225 VKIWATLRQDLTPVIAAASTLLIAVTII 252
Cdd:cd06261   161 TGLLLIFAILFPGDLGVAAAVALILLLL 188
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 72-202 1.14e-07

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 50.62  E-value: 1.14e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  72 SLRIALMVTVLSVLIGLVASFGLVRGRFLGRGTLCALFMTPMILPVVVLAVALYAFFLK------LGLAGTTTGFVIAHL 145
Cdd:NF038017    1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRsgplgfLGLLYTPTAMIIAQA 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1494962078 146 VVALPFsILALT-GALEGFDKSIEDAAVLCGASPLQAkIRITLPAISHGLFSAAIFSF 202
Cdd:NF038017   81 VLALPI-VAGLTlAAVQGLDPELRLQILSLGATRWQA-LWTLLKEARFALLAAVLAGF 136
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 83-265 7.16e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 42.29  E-value: 7.16e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  83 SVLIGLVAsfGLVRGRFLgRGTLCALFMTPMILPVVVLAVALYAFFLKLGLAGTTTGFVIAHLVVALPFSILALTGALEG 162
Cdd:pfam00528   1 GIPLGIIA--ALRRGRRL-DRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRS 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 163 FDKSIEDAAVLCGASPLQAKIRITLPAISHGLFSAAIFSFLTSWDEVVLAIFMASPTL--QTLPVKIWATLRQDLTPVIA 240
Cdd:pfam00528  78 LPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGlgLLLIEAILGYDYPEIQGPVL 157

                         170       180
                  ....*....|....*....|....*
gi 1494962078 241 AASTLLIAVTIILMLLVAAVRKGLK 265
Cdd:pfam00528 158 AAALILLLLNLLVDILQRLLDPRVR 182
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 18-262 7.44e-78

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 236.16  E-value: 7.44e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  18 ITVLTSAFLILPIVFIAALSFGSSQWLIFPPPGWTLKWYADFFADPRWLEAAWTSLRIALMVTVLSVLIGLVASFGLVRG 97
Cdd:COG1177    12 FLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARY 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  98 RFLGRGTLCALFMTPMILPVVVLAVALYAFFLKLGLAGTTTGFVIAHLVVALPFSILALTGALEGFDKSIEDAAVLCGAS 177
Cdd:COG1177    92 RFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGAS 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 178 PLQAKIRITLPAISHGLFSAAIFSFLTSWDEVVLAIFMASPTLQTLPVKIWATLRQDLTPVIAAASTLLIAVTIILMLLV 257
Cdd:COG1177   172 PWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALSTLLILLSLLLLLLA 251


                  ....*
gi 1494962078 258 AAVRK 262
Cdd:COG1177   252 ERLRR 256
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 18-257 2.46e-37

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 132.91  E-value: 2.46e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  18 ITVLTSAFLILPIVFIAALSFGSSQWLI-----FPPPGWTLKWYADFFADPRWLEAAWTSLRIALMVTVLSVLIGLVASF 92
Cdd:COG0395    20 LLILLALLFLFPLYWMVVTSFKPPAEIFsgppsLLPSEFTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAY 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  93 GLVRGRFLGRGTLCALFMTPMILPVVVLAVALYAFFLKLGLAGTTTGFVIAHLVVALPFSILALTGALEGFDKSIEDAAV 172
Cdd:COG0395   100 ALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAAR 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 173 LCGASPLQAKIRITLPAISHGLFSAAIFSFLTSWDEVVLA-IFMASPTLQTLPVKIWATLRQDLTP--VIAAASTLLIAV 249
Cdd:COG0395   180 IDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPlILLTSPDLRTLPVGLASFQGQYGTDwgLLMAAAVIATLP 259


                  ....*...
gi 1494962078 250 TIILMLLV 257
Cdd:COG0395   260 VLILFLFL 267
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
18-257 7.96e-35

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 131.05  E-value: 7.96e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  18 ITVLTSAFLILPIVFIAALSFGSsqwliFPPPGWTLKWYADFFADPRWLEAAWTSLRIALMVTVLSVLIGLVASFGLVRG 97
Cdd:COG1178   294 CLLLVLLGLLLPLLALLLWSLTK-----ALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRR 368

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  98 RFLGRGTLCALFMTPMILPVVVLAVALYAFFLK---LGLAGTTTGFVIAHLVVALPFSILALTGALEGFDKSIEDAAVLC 174
Cdd:COG1178   369 RGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRplpLLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSL 448

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 175 GASPLQAKIRITLPAISHGLFSAAIFSFLTSWDEVVLAIFMASPTLQTLPVKIWATLRQDLTPVIAAASTLLIAVTIILM 254
Cdd:COG1178   449 GASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIYQLASSGRYGEAAALALLLVLVSLLPV 528


                  ...
gi 1494962078 255 LLV 257
Cdd:COG1178   529 LLL 531
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 24-256 7.12e-32

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 117.78  E-value: 7.12e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  24 AFLILPIVFIAALSFGSSQWLIfPPPGWTLKWYADFFADPRWLEAAWTSLRIALMVTVLSVLIGLVASFGLVRGRFLGRG 103
Cdd:PRK09500   15 AYLYIPIIILIVNSFNSSRFGI-NWKGFTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKK 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 104 TLCALFMTPMILPVVVLAVALYAFFLKLGLagtTTGFV---IAHLVVALPFSILALTGALEGFDKSIEDAAVLCGASPLQ 180
Cdd:PRK09500   94 FVSGMLFVVMMSPDIVMAISLLVLFMLLGI---QLGFWsllFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFT 170

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1494962078 181 AKIRITLPAISHGLFSAAIFSFLTSWDEVVLAIFMASPTLQTLPVKIWATLRQDLTPVIAAASTLLIAVTIILMLL 256
Cdd:PRK09500  171 ILRKIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGPSYEILPLKIYSMVKVGVSPEVNALATILLVLSLVLVIL 246
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 19-258 5.54e-28

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 108.31  E-value: 5.54e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  19 TVLTSAFLILPIVFIAALSFGSSQWLIFPPPGWTLKWYADFFADPRWLEAAWTSLRIALMVTVLSVLIGLVASFGLVRGR 98
Cdd:COG1176    19 LLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAP 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  99 FLGRGTLCALFMTPMILPVVVLAVALYAFF----------LKLGLAG-------TTTGFVIAHLVVALPFSILALTGALE 161
Cdd:COG1176    99 PRWRNLLLLLVILPFWTSFLVRTYAWIVLLgrngllnsllLALGLIDeplrllyTEFAVVIGLVYVYLPFMVLPLYAALE 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 162 GFDKSIEDAAVLCGASPLQAKIRITLPAISHGLFSAAIFSFLTSWDEVVLAIFMASPTLQTLPVKIWATLRQDLT-PVIA 240
Cdd:COG1176   179 KIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQQFLSALNwPLAA 258

                         250
                  ....*....|....*...
gi 1494962078 241 AASTLLIAVTIILMLLVA 258
Cdd:COG1176   259 ALAVVLLLIVLLVLLLYL 276
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 18-256 8.08e-24

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 97.23  E-value: 8.08e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  18 ITVLTSAFLILPIVFIAALSFGSSQwLIFPPPGWTLKWYADFFADPRWLEAAWTSLRIALMVTVLSVLIGLVASFGLVR- 96
Cdd:PRK10592   15 ILVLGFTFLYAPMLMLVIYSFNSSK-LVTVWAGWSTRWYGELFRDDAMMSAVGLSLTIAACAATAAAILGTIAAVVMVRf 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  97 GRFLGRGTLCALFMTPMILPVVVLAVALYAFFLKLGLA-------GTTTGFvIAHLVVALPFSILALTGALEGFDKSIED 169
Cdd:PRK10592   94 GRFRGSNGFAFMITAPLVMPDVITGLSLLLLFVALAHAigwpadrGMLTIW-LAHVTFCTAYVAVVISSRLRELDRSIEE 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 170 AAVLCGASPLQAKIRITLPAISHGLFSAAIFSFLTSWDEVVLAIFMASPTLQTLPVKIWATLRQDLTPVIAAASTLLIAV 249
Cdd:PRK10592  173 AAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNPEINALATLILGV 252


                  ....*..
gi 1494962078 250 TIILMLL 256
Cdd:PRK10592  253 VGIVGFI 259
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 62-202 6.26e-23

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 93.19  E-value: 6.26e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  62 DPRWLEAAWTSLRIALMVTVLSVLIGLVASFGLVRGRFLGRGTLCALFMTPMILPVVVLAVALYAFFLKLGLAG------ 135
Cdd:COG4149     2 SPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGqlleel 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1494962078 136 -------TTTGFVIAHLVVALPFSILALTGALEGFDKSIEDAAVLCGASPLQAKIRITLPAISHGLFSAAIFSF 202
Cdd:COG4149    82 fgislvfTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAF 155
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
23-263 2.29e-22

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 95.61  E-value: 2.29e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  23 SAFLILPIVFIAALSFGSSQWLIFPPPGWTLKWYADFFADPRWLEAAWTSLRIALMVTVLSVLIGLVASFGLVRGRFLGR 102
Cdd:COG1178    10 RLLLLLLALLLALLVLLPLLALLLRAFTDGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGR 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 103 GTLCALFMTPMILPVVVLAVALYAFFLKLGLAGTT---------------TGFVIAHLVVALPFSILALTGALEGFDKSI 167
Cdd:COG1178    90 RLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLlralfgleppdiyglGGIILVLVLFNYPYVYLLLRAALRSIDASL 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 168 EDAAVLCGASPLQAKIRITLPAISHGLFSAAIFSFLTSWDEVVLAIFMAsPTLQTLPVKIWATLRQDLTPVIAAA-STLL 246
Cdd:COG1178   170 EEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLG-GGYTTLTTAIYQAWLGDFDLGAAAAlALVL 248

                         250
                  ....*....|....*..
gi 1494962078 247 IAVTIILMLLVAAVRKG 263
Cdd:COG1178   249 LLLVLLLLLLERRLRRR 265
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 18-257 2.20e-21

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 90.19  E-value: 2.20e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  18 ITVLTSAFLILPIVFIAALSFGssqwlifppPGWTLKWyaDFFADPRWLEAAWTSLRIALMVTVLSVLIGLVASFGLVRG 97
Cdd:COG0555    16 TLLYLSLIVLLPLAALVLKAAG---------LGWAEFW--AVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRY 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  98 RFLGRGTLCALFMTPMILPVVVLAVALYAFFLKLGLAG------------TTTGFVIAHLVVALPFSILALTGALEGFDK 165
Cdd:COG0555    85 RFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGqllaplgikvafTPLGIVLAQTFVSLPFVVRTVQPVLEELDP 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 166 SIEDAAVLCGASPLQAKIRITLPAISHGLFSAAIFSFLTSWDEVVLAIFMASPTL---QTLPVKIWATLRQDLTPVIAAA 242
Cdd:COG0555   165 ELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGNLPmktEILPLLIYLKLEEGDYAGATAI 244

                         250
                  ....*....|....*
gi 1494962078 243 STLLIAVTIILMLLV 257
Cdd:COG0555   245 ALVLLLISFLLLLLI 259
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 70-257 2.22e-19

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 83.45  E-value: 2.22e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  70 WTSLRIALMVTVLSVLIGLVASFGLVRGRFLGRGTLCALFMTPMILPVVVLAVALYAFFLKLGLAG------------TT 137
Cdd:TIGR02141   1 WLSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGkllelfgislvfTF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 138 TGFVIAHLVVALPFSILALTGALEGFDKSIEDAAVLCGASPLQAKIRITLPAISHGLFSAAIFSFLTSWDEVVLAIFMAS 217
Cdd:TIGR02141  81 TGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFAG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1494962078 218 P---TLQTLPVKIWATLRQDLTPViAAASTLLIAVTIILMLLV 257
Cdd:TIGR02141 161 NipgETQTIPLAIYDAVESDYELA-HQLSLVLLAISLIVLLLV 202
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
20-256 1.46e-16

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 77.48  E-value: 1.46e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  20 VLTSAFLILPIVFIAALSFGSSQwLIFPPPGWT-LKWYADFFADPRWLEAAWTSLRIALMVTVLSVLIGLVASFgLVRGR 98
Cdd:COG1175    29 LLLLVFVLYPLLYTLYLSFTDWN-LLGPPPEFVgLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLAL-LLNRK 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  99 FLGRGTLCALFMTPMILPVVVLAVA-----------LYAFFLKLGLAG----TTTGFVIAHLVVA-----LPFSILALTG 158
Cdd:COG1175   107 LRGRGFFRTLFFLPWVISPVVVALIwkwlfnpdyglLNALLGALGLEPinwlGDPSLALPAVIIVtvwkgTGFNMLIFLA 186

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 159 ALEGFDKSIEDAAVLCGASPLQAKIRITLPAISHGLFSAAIFSFLTSWD--EVVLAIFMASP--TLQTLPVKIWATLRQD 234
Cdd:COG1175   187 GLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQvfDLVYVLTGGGPgnSTTTLVLYIYQTAFQQ 266

                         250       260
                  ....*....|....*....|...
gi 1494962078 235 L-TPVIAAASTLLIAVTIILMLL 256
Cdd:COG1175   267 FdFGYASAIAVVLFLIILVLTLL 289
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 26-259 2.73e-13

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 67.76  E-value: 2.73e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  26 LILPIVFIAALSFGssqwlifppPGWTLKWYAdfFADPRWLEAAWTSLRIALMVTVLSVLIGLVASFGLVRGRFLGRGTL 105
Cdd:TIGR00969  30 LILPVAALFVQAFS---------KGLGQFWQN--ATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLL 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 106 CALFMTPMILPVVVLAVALYAFFLKLGLAG------------TTTGFVIAHLVVALPFSILALTGALEGFDKSIEDAAVL 173
Cdd:TIGR00969  99 DALIDLPFALSPVVAGLTLALLYGSNGWLGswlasfgiqiifTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAAT 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 174 CGASPLQAKIRITLPAISHGLFSAAIFSFLTSWDEVVLAIFMASP---TLQTLPVKIWATLRQDLTPVIAAASTLLIAVT 250
Cdd:TIGR00969 179 LGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVSGNipgKTLTLPLLIEERLEQYDYPGAYVIAAVLLLVS 258


                  ....*....
gi 1494962078 251 IILMLLVAA 259
Cdd:TIGR00969 259 LVTLFLINA 267
modB PRK09421
molybdate ABC transporter permease subunit;
72-255 3.57e-13

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 66.87  E-value: 3.57e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  72 SLRIALMVTVLSVLIGLVASFGLVRGRFLGRGTLCALFMTPMILPVVVLAVALYAFFLKLGLAG-------------TTT 138
Cdd:PRK09421   14 SLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGqwlyewfgisfafSWR 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 139 GFVIAHLVVALPFSILALTGALEGFDKSIEDAAVLCGASPLQAKIRITLPAISHGLFSAAIFSFLTSWDEvvlaiFMASP 218
Cdd:PRK09421   94 GAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGE-----FGATI 168

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1494962078 219 TL--------QTLPVKIWATLRqdlTPVIAAASTLLIAVTIILML 255
Cdd:PRK09421  169 TFvsnipgetQTIPSAMYTLIQ---TPGGESAAARLCIISIAIAL 210
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 69-252 4.37e-10

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 57.67  E-value: 4.37e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  69 AWTSLRIALMVTVLSVLIGLVASFGLVRGRFLGRGTLCALFMTPMILPVVVLAVALYAFFLKLGLAGTTTGF----VIAH 144
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLglpaLILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 145 LVVALPFSILALTGALEGFDKSIEDAAVLCGASPLQAKIRITLPAISHGLFSAAIFSFLTSWDEVVLAIFMASPTLQTLP 224
Cdd:cd06261    81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                         170       180
                  ....*....|....*....|....*...
gi 1494962078 225 VKIWATLRQDLTPVIAAASTLLIAVTII 252
Cdd:cd06261   161 TGLLLIFAILFPGDLGVAAAVALILLLL 188
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 18-202 7.02e-10

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 58.92  E-value: 7.02e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  18 ITVLTSAFLILPIVFIAALSF--GSSQWLifpppgwTLKWYADFFADPRWLEAAWTSLRIALMVTVLSVLIGLVASFGLV 95
Cdd:TIGR03262  10 MILALLLFLLLPLLALLTKSVydSDGDFI-------GLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALT 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  96 RGRFLGRGTLCALFMTPMILPVVVLAVALYAFF-----LKLGLAGTTT----GFVIAHLVVALPFSILALTGALEGFDKS 166
Cdd:TIGR03262  83 RSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFgnqglLKGLLGGFSIygfwGIVIGEVFYTFPHALMILVTALSLADGR 162

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1494962078 167 IEDAAVLCGASPLQAKIRITLPAISHGLFSAAIFSF 202
Cdd:TIGR03262 163 LYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVF 198
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 21-188 9.88e-10

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 58.34  E-value: 9.88e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  21 LTSAFLILPIVFIAALSFGSSQWL-IFP---PPGWTLKWYADffADPRWLEAAWTSLRIALMVTVLSVLIGLVA-SFGLV 95
Cdd:COG4135   308 LMLLIALLSLLGLALLLLWSFAGRwRFPdalPSSWTLRFWQR--AAPGLLEPLGNTLLLALASALIALVLVLAClEAEAR 385

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  96 RGRFLGRGTLCALFMtPMILPVVVLAVALYAFFLKLGLAGTTTGFVIAHLVVALPFSILALTGALEGFDKSIEDAAVLCG 175
Cdd:COG4135   386 RGRRPGRRALWLLYL-PLLVPQIAFLFGLQVLLLRLGLDGTWLAVIWAHLVFVLPYVFLSLAGPWRALDPRYAQVAASLG 464

                         170
                  ....*....|...
gi 1494962078 176 ASPLQAKIRITLP 188
Cdd:COG4135   465 ASPWRVFWRVKLP 477
cysT CHL00187
sulfate transport protein; Provisional
 26-202 4.51e-08

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 52.32  E-value: 4.51e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  26 LILPIvfIAALSFGSSQwlifpppGWTLKWyaDFFADPRWLEAAWTSLRIALMVTVLSVLIGLVASFGLVRGRFLGRGTL 105
Cdd:CHL00187   25 LVLPI--LALLIKASQQ-------PWSDFL--QKATEPIALSAYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKRLL 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 106 CALFMTPMILPVVVLAVAL------------YAFFLKLGLAGTTTGFVIAHLVVALPFSILALTGALEGFDKSIEDAAVL 173
Cdd:CHL00187   94 DAAVDLPFALPTSVAGLTLatvygdngwighLLSHLGIQIVFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWS 173

                         170       180
                  ....*....|....*....|....*....
gi 1494962078 174 CGASPLQAKIRITLPAISHGLFSAAIFSF 202
Cdd:CHL00187  174 LGASPWQTFWKVIFPPLIPALLTGLALTF 202
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
52-257 4.52e-08

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 52.83  E-value: 4.52e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  52 TLKWYADFFADPRWLEAAWTSLRIALMVTVLSVLIGLVASFGLVRGRFLGRGTLCALFMTPMILPVVVLAVALYAFFLKL 131
Cdd:PRK10971   43 SWAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVN 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 132 GLAG------------TTTGFVIAHLVVALPFSILALTGALEGFDKSIEDAAVLCGASPLQAKIRITLPAISHGLFSAAI 199
Cdd:PRK10971  123 GWYGewlakfdikvtyTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVA 202

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1494962078 200 FSFLTSWDEVVLAIFMASPTL---QTLPVKIWATLRQDLTPVIAAASTLLIAVTIILMLLV 257
Cdd:PRK10971  203 LSFTRSLGEFGAVIFIAGNIAwktEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFSI 263
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 72-202 1.14e-07

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 50.62  E-value: 1.14e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  72 SLRIALMVTVLSVLIGLVASFGLVRGRFLGRGTLCALFMTPMILPVVVLAVALYAFFLK------LGLAGTTTGFVIAHL 145
Cdd:NF038017    1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRsgplgfLGLLYTPTAMIIAQA 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1494962078 146 VVALPFsILALT-GALEGFDKSIEDAAVLCGASPLQAkIRITLPAISHGLFSAAIFSF 202
Cdd:NF038017   81 VLALPI-VAGLTlAAVQGLDPELRLQILSLGATRWQA-LWTLLKEARFALLAAVLAGF 136
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 20-256 3.01e-06

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 47.31  E-value: 3.01e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  20 VLTSAFLILPIVFIAALSFGSSQwlifpppGWTLKWYADFFADPRWLEAAWTSLRIALMVTVLSVLIGLVASFGLVRGRF 99
Cdd:PRK15050   33 LVLAPLVVYPLVRVVLQSLTGEH-------GLGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVLGVLLALVLAFVPF 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 100 LGRGTLCALFMTPMILPVVVLAVALYAFFLKLGLA------------------GTTTGFVIAHLVVALPFSILALTGALE 161
Cdd:PRK15050  106 PGASLVGRFIDTFVAFPSFLITLAFTFLYGSAGSVnialqrlfgleappldflYSPGGVILAEITFYTPFVVRPLLAAFA 185

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 162 GFDKSIEDAAVLCGASPLQAKIRITLPAISHGLFSAAIFSFLTSWDEVVLAIFMASPTLQTLPVKIW--ATLRQDLtPVI 239
Cdd:PRK15050  186 QLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAKDVVTLPVLIYskAIVDFDY-PTA 264

                         250
                  ....*....|....*..
gi 1494962078 240 AAASTLLIAVTIILMLL 256
Cdd:PRK15050  265 CAIAVVNLALSLGLYAL 281
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 26-262 2.35e-05

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 44.37  E-value: 2.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  26 LILPIVFIAALSFGSSQWL----IFPPPGWTLKWYADFFADPRWLEAAWTSLRIALMVTVLSVLIGLVASFGLVRGRFLG 101
Cdd:COG0600    16 LLSLALLLALWELAARLGLvppfLLPSPSAVLAALVELLASGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRLLR 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 102 RGTLCALFMTPMIlPVVVLAVALYAFFlklGLAGTTTGFVIAhlVVALPFSILALTGALEGFDKSIEDAAVLCGASPLQA 181
Cdd:COG0600    96 RLLDPLLVFLRPI-PPLALAPLLILWF---GIGEASKIFVIF--LGAFFPILLNTAAGVRSVDPELLELARSLGASRWQI 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 182 KIRITLPAISHGLFSAAIFSFLTSWDEVVLAIFMASPtlQTLPVKIWATLRQDLTPVIAAASTLLIAVTIILMLLVAAVR 261
Cdd:COG0600   170 LRKVVLPAALPYIFTGLRIALGLAWIGLVVAELLGAS--SGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDLLLRLLE 247


                  .
gi 1494962078 262 K 262
Cdd:COG0600   248 R 248
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 83-265 7.16e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 42.29  E-value: 7.16e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  83 SVLIGLVAsfGLVRGRFLgRGTLCALFMTPMILPVVVLAVALYAFFLKLGLAGTTTGFVIAHLVVALPFSILALTGALEG 162
Cdd:pfam00528   1 GIPLGIIA--ALRRGRRL-DRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRS 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 163 FDKSIEDAAVLCGASPLQAKIRITLPAISHGLFSAAIFSFLTSWDEVVLAIFMASPTL--QTLPVKIWATLRQDLTPVIA 240
Cdd:pfam00528  78 LPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGlgLLLIEAILGYDYPEIQGPVL 157

                         170       180
                  ....*....|....*....|....*
gi 1494962078 241 AASTLLIAVTIILMLLVAAVRKGLK 265
Cdd:pfam00528 158 AAALILLLLNLLVDILQRLLDPRVR 182
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
19-257 2.96e-04

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 41.28  E-value: 2.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  19 TVLTSAFLILPIV--FIAALSFGssqwlifpppgwtLKWYADFFADPRWLEAAWTSLRIALMVTVLSVLIGLVASFGLVR 96
Cdd:PRK11602   27 MLVSAFILVVPMIyiFVQAFSKG-------------LMPVLQNLADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTR 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  97 GRFLGRGTLCALFMTPMILPVVVLAVALYAFFLKLGLAG------------TTTGFVIAHLVVALPFSILALTGALEGFD 164
Cdd:PRK11602   94 FNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGgwldehnlqlmfSWPGMVLVTIFVTCPFVVRELVPVMLSQG 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 165 KSIEDAAVLCGASPLQAKIRITLPAISHGLFSAAIFSFLTSWDEVVlAIFMASPTLQ----TLPVKIwATLRQDLTPVIA 240
Cdd:PRK11602  174 SQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFG-AVSVVSGSIRgetlSLPLQI-ELLEQDYNTVGS 251

                         250
                  ....*....|....*..
gi 1494962078 241 AASTLLIAVTIILMLLV 257
Cdd:PRK11602  252 FTAAALLTLMAIITLFL 268
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 66-264 4.68e-04

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 41.20  E-value: 4.68e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  66 LEAAWTSLRIALMVTVLSVLIGLVASFGLVRGRFLG--RGTLCALFMTPMILPVVVLAVALYAFFLKL-----GLAGTTT 138
Cdd:TIGR03262 331 WEAYKNSLRLAATTALIGTILVFGGAYLIEKTRGFGllRGVLRFLAILPMAVPGLVLGLGYIFFFNAPtnplnGLYGTMA 410

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 139 GFVIAHLVVALPFSILALTGALEGFDKSIEDAAVLCGASPLQAKIRITLPAISHGLFSAAIFSFLTSWDEVVLAIFMASP 218
Cdd:TIGR03262 411 LLVLCTVVHFYTVSHLTAVTALKQIDSEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLFVNSMTTVSAVVFLYSP 490

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1494962078 219 TLQTLPVKIWATLRQDLTPVIAAASTLLIAVTIILMLLVAAVRKGL 264
Cdd:TIGR03262 491 DTKLASVAILNMDDAGDIAPAAAMATLIVLTSAVAKLLFALASRRL 536
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 25-203 4.01e-03

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 37.74  E-value: 4.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  25 FLILPIVFIAALSFGSSQWLIFPPPGWTLKWYADFFaDPRWLEAAWTSLRIALMVTVLSVLIGLVASFGLVRGRFLGRgt 104
Cdd:PRK09497   22 FVFLPNLMIIGTSFLTRDDANFVKMVFTLDNYTRLL-DPLYAEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVR-- 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 105 lcALFMTPMILPV------------VVLAVA--LYAFFLKLGLAG-------TTTGFVIAHLVVALPFSILALTGALEGF 163
Cdd:PRK09497   99 --PLLLFLLIVPFwtnsliriyglkIFLSTKgyLNEFLLWLGVIDtpirimfTESAVIIGLVYILLPFMVLPLYSSIEKL 176

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1494962078 164 DKSIEDAAVLCGASPLQAKIRITLPAISHGLFSAAIFSFL 203
Cdd:PRK09497  177 DKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLL 216
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 27-161 5.34e-03

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 37.89  E-value: 5.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078  27 ILPIVFIAALSFGSSQWLIFPPPGWTLKWyadFFADPRWLEAAWTSLRIALMVTVLSVLIGLVASFGLVRGRFLGRGTLC 106
Cdd:PRK09433    7 VLAAALLVALALLALLALWLHAPGGDWDA---VWQDSYLWHVLRFSFWQAFLSALLSVLPAIPLARALYRRRFPGRGLLL 83

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494962078 107 ALFMTPMILPVVVLAVALYAFFLKLGLAGTT---------------TGFVIAHLVVALPFSILALTGALE 161
Cdd:PRK09433   84 RLCAMTLVLPVLVAVFGLLSVYGRSGWLAQLlqalglewpfsiyglQGILLAHVFFNLPLATRLLLQALE 153
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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