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Conserved domains on  [gi|1496506465|ref|WP_121850366|]
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AraC family transcriptional regulator [Euzebyella marina]

Protein Classification

helix-turn-helix domain-containing protein( domain architecture ID 11454391)

helix-turn-helix (HTH) domain-containing protein with an AraC family HTH domain, binds DNA and may function as a transcriptional regulator

CATH:  1.10.10.60
Gene Ontology:  GO:0003700|GO:0003677
PubMed:  10473770|15808743|8831795

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
53-288 5.29e-27

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


:

Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 106.02  E-value: 5.29e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496506465  53 IHYADRSFDMNGTILFFGNPHIPYSWETVSSTYVGYTCLFSEDFLNESERSESLQNSPFFKFGGTPVLDISLDQREFLNG 132
Cdd:COG2207    18 LLLLLLLLLLILLLLALVLLLLLLALLLLLLLLLGLLGGLLLLLLLLLLLGLLLLLLLLLLGLLLLALLALLLLVGLLLL 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496506465 133 IFRKMIEEQQSDYMYKDELIRNYINLIIHESLKMQPSENFNKHKNAASRIANVFLELLERQFPIESpdLPLKLRSAQEYA 212
Cdd:COG2207    98 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLALLRALELLLLLLLLLLLLLLLLLLLLLLLLLLLL--LLLLLLTLEELA 175

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1496506465 213 DTLALHPNHLNRSLKQVTGKTTTTLINERVVSEAKAMLQHTDWNISDIAYALGFEYPTYFNNFFRKVTGTNPSGYR 288
Cdd:COG2207   176 RELGLSPRTLSRLFKEETGTSPKQYLRELRLERAKRLLAETDLSISEIAYELGFSSQSHFSRAFKKRFGVTPSEYR 251
 
Name Accession Description Interval E-value
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
53-288 5.29e-27

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 106.02  E-value: 5.29e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496506465  53 IHYADRSFDMNGTILFFGNPHIPYSWETVSSTYVGYTCLFSEDFLNESERSESLQNSPFFKFGGTPVLDISLDQREFLNG 132
Cdd:COG2207    18 LLLLLLLLLLILLLLALVLLLLLLALLLLLLLLLGLLGGLLLLLLLLLLLGLLLLLLLLLLGLLLLALLALLLLVGLLLL 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496506465 133 IFRKMIEEQQSDYMYKDELIRNYINLIIHESLKMQPSENFNKHKNAASRIANVFLELLERQFPIESpdLPLKLRSAQEYA 212
Cdd:COG2207    98 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLALLRALELLLLLLLLLLLLLLLLLLLLLLLLLLLL--LLLLLLTLEELA 175

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1496506465 213 DTLALHPNHLNRSLKQVTGKTTTTLINERVVSEAKAMLQHTDWNISDIAYALGFEYPTYFNNFFRKVTGTNPSGYR 288
Cdd:COG2207   176 RELGLSPRTLSRLFKEETGTSPKQYLRELRLERAKRLLAETDLSISEIAYELGFSSQSHFSRAFKKRFGVTPSEYR 251
HTH_18 pfam12833
Helix-turn-helix domain;
211-288 7.97e-22

Helix-turn-helix domain;


Pssm-ID: 432818 [Multi-domain]  Cd Length: 81  Bit Score: 86.87  E-value: 7.97e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1496506465 211 YADTLALHPNHLNRSLKQVTGKTTTTLINERVVSEAKAML-QHTDWNISDIAYALGFEYPTYFNNFFRKVTGTNPSGYR 288
Cdd:pfam12833   1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLlEDTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYR 79
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
210-288 2.65e-20

helix_turn_helix, arabinose operon control protein;


Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 82.99  E-value: 2.65e-20
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1496506465  210 EYADTLALHPNHLNRSLKQVTGKTTTTLINERVVSEAKAMLQHTDWNISDIAYALGFEYPTYFNNFFRKVTGTNPSGYR 288
Cdd:smart00342   6 DLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTPSEYR 84
PRK10572 PRK10572
arabinose operon transcriptional regulator AraC;
42-288 2.35e-09

arabinose operon transcriptional regulator AraC;


Pssm-ID: 236717 [Multi-domain]  Cd Length: 290  Bit Score: 56.91  E-value: 2.35e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496506465  42 YKICLTT-GKSVIHYADRSFDMN-GTILFF--GNPHIPYSWETVSSTYVGYTCL----FSEDFLNESERSEslqnspffK 113
Cdd:PRK10572   50 YILNLTIrGQGVIFNGGRAFVCRpGDLLLFppGEIHHYGRHPDSDEWYHQWVYFrpraYWADWLNWPSIFA--------G 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496506465 114 FGGTPVLDISLdQREFlNGIFRKMIEEQQSDYMYKDELIRNYINLIIHESLKMQPSENFNKHKNaasRIANV---FLELL 190
Cdd:PRK10572  122 VGRLRIPDEAL-QPEF-SDLFGQIEQAGQSEGRYSELLAMNLLERLLLRCMEAIPESLHPPMDP---RVREAcqyISDHL 196

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496506465 191 ERQFPIEspdlplklrsaqEYADTLALHPNHLNRSLKQVTGKTTTTLINERVVSEAKAMLQHTDWNISDIAYALGFEYPT 270
Cdd:PRK10572  197 ASEFDIE------------SVAQHVCLSPSRLAHLFRQQLGISVLRWREDQRISRAKLLLQTTRMPIATIGRNVGYDDQL 264

                         250
                  ....*....|....*...
gi 1496506465 271 YFNNFFRKVTGTNPSGYR 288
Cdd:PRK10572  265 YFSRVFKKCTGASPSEFR 282
 
Name Accession Description Interval E-value
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
53-288 5.29e-27

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 106.02  E-value: 5.29e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496506465  53 IHYADRSFDMNGTILFFGNPHIPYSWETVSSTYVGYTCLFSEDFLNESERSESLQNSPFFKFGGTPVLDISLDQREFLNG 132
Cdd:COG2207    18 LLLLLLLLLLILLLLALVLLLLLLALLLLLLLLLGLLGGLLLLLLLLLLLGLLLLLLLLLLGLLLLALLALLLLVGLLLL 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496506465 133 IFRKMIEEQQSDYMYKDELIRNYINLIIHESLKMQPSENFNKHKNAASRIANVFLELLERQFPIESpdLPLKLRSAQEYA 212
Cdd:COG2207    98 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLALLRALELLLLLLLLLLLLLLLLLLLLLLLLLLLL--LLLLLLTLEELA 175

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1496506465 213 DTLALHPNHLNRSLKQVTGKTTTTLINERVVSEAKAMLQHTDWNISDIAYALGFEYPTYFNNFFRKVTGTNPSGYR 288
Cdd:COG2207   176 RELGLSPRTLSRLFKEETGTSPKQYLRELRLERAKRLLAETDLSISEIAYELGFSSQSHFSRAFKKRFGVTPSEYR 251
HTH_18 pfam12833
Helix-turn-helix domain;
211-288 7.97e-22

Helix-turn-helix domain;


Pssm-ID: 432818 [Multi-domain]  Cd Length: 81  Bit Score: 86.87  E-value: 7.97e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1496506465 211 YADTLALHPNHLNRSLKQVTGKTTTTLINERVVSEAKAML-QHTDWNISDIAYALGFEYPTYFNNFFRKVTGTNPSGYR 288
Cdd:pfam12833   1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLlEDTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYR 79
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
210-288 2.65e-20

helix_turn_helix, arabinose operon control protein;


Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 82.99  E-value: 2.65e-20
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1496506465  210 EYADTLALHPNHLNRSLKQVTGKTTTTLINERVVSEAKAMLQHTDWNISDIAYALGFEYPTYFNNFFRKVTGTNPSGYR 288
Cdd:smart00342   6 DLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTPSEYR 84
AdaA COG2169
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), ...
 187-288 2.49e-11

Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair];


Pssm-ID: 441772 [Multi-domain]  Cd Length: 358  Bit Score: 63.53  E-value: 2.49e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496506465 187 LELLErqfpiESPDLPLKLrsaQEYADTLALHPNHLNRSLKQVTGKTTTTLINERVVSEAKAMLQhTDWNISDIAYALGF 266
Cdd:COG2169    90 CRLIE-----AGAEDRPSL---EDLAARLGLSPRHLRRLFKAHTGVTPKAYARARRLLRARQLLQ-TGLSVTDAAYAAGF 160

                          90       100
                  ....*....|....*....|..
gi 1496506465 267 EYPTYFNNFFRKVTGTNPSGYR 288
Cdd:COG2169   161 GSLSRFYEAFKKLLGMTPSAYR 182
GlxA COG4977
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ...
 212-288 1.52e-09

Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];


Pssm-ID: 444002 [Multi-domain]  Cd Length: 318  Bit Score: 57.86  E-value: 1.52e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1496506465 212 ADTLALHPNHLNRSLKQVTGKT-TTTLINERVvSEAKAMLQHTDWNISDIAYALGFEYPTYFNNFFRKVTGTNPSGYR 288
Cdd:COG4977   233 ARRAGMSPRTLERRFRAATGTTpARYLQRLRL-ERARRLLETTDLSIEEIAAACGFGSASHFRRAFRRRFGVSPSAYR 309
PRK10572 PRK10572
arabinose operon transcriptional regulator AraC;
42-288 2.35e-09

arabinose operon transcriptional regulator AraC;


Pssm-ID: 236717 [Multi-domain]  Cd Length: 290  Bit Score: 56.91  E-value: 2.35e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496506465  42 YKICLTT-GKSVIHYADRSFDMN-GTILFF--GNPHIPYSWETVSSTYVGYTCL----FSEDFLNESERSEslqnspffK 113
Cdd:PRK10572   50 YILNLTIrGQGVIFNGGRAFVCRpGDLLLFppGEIHHYGRHPDSDEWYHQWVYFrpraYWADWLNWPSIFA--------G 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496506465 114 FGGTPVLDISLdQREFlNGIFRKMIEEQQSDYMYKDELIRNYINLIIHESLKMQPSENFNKHKNaasRIANV---FLELL 190
Cdd:PRK10572  122 VGRLRIPDEAL-QPEF-SDLFGQIEQAGQSEGRYSELLAMNLLERLLLRCMEAIPESLHPPMDP---RVREAcqyISDHL 196

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496506465 191 ERQFPIEspdlplklrsaqEYADTLALHPNHLNRSLKQVTGKTTTTLINERVVSEAKAMLQHTDWNISDIAYALGFEYPT 270
Cdd:PRK10572  197 ASEFDIE------------SVAQHVCLSPSRLAHLFRQQLGISVLRWREDQRISRAKLLLQTTRMPIATIGRNVGYDDQL 264

                         250
                  ....*....|....*...
gi 1496506465 271 YFNNFFRKVTGTNPSGYR 288
Cdd:PRK10572  265 YFSRVFKKCTGASPSEFR 282
PRK13503 PRK13503
HTH-type transcriptional activator RhaS;
209-289 3.59e-09

HTH-type transcriptional activator RhaS;


Pssm-ID: 184094 [Multi-domain]  Cd Length: 278  Bit Score: 56.22  E-value: 3.59e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496506465 209 QEYADTLALHPNHLNRSLKQVTGKTTTTLINERVVSEAKAMLQHTDWNISDIAYALGFEYPTYFNNFFRKVTGTNPSGYR 288
Cdd:PRK13503  191 EALADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLLKARHLLRHSDASVTDIAYRCGFGDSNHFSTLFRREFSWSPRDIR 270


                  .
gi 1496506465 289 I 289
Cdd:PRK13503  271 Q 271
PRK10371 PRK10371
transcriptional regulator MelR;
166-288 1.45e-07

transcriptional regulator MelR;


Pssm-ID: 182416 [Multi-domain]  Cd Length: 302  Bit Score: 51.74  E-value: 1.45e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496506465 166 MQPSENFNKHKNAASRIANVFL-ELLErqFPIESPDLPLKLrsaQEYADTLALHPNHLNRSLKQVTGKTTTTLINERVVS 244
Cdd:PRK10371  172 ILVNKTSRTHKNSVSRHAQFYVsQMLG--FIAENYDQALTI---NDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRIN 246

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1496506465 245 EAKAMLQHTDWNISDIAYALGFEYPTYFNNFFRKVTGTNPSGYR 288
Cdd:PRK10371  247 HVRALLSDTDKSILDIALTAGFRSSSRFYSTFGKYVGMSPQQYR 290
PRK10296 PRK10296
DNA-binding transcriptional regulator ChbR; Provisional
 221-288 4.82e-07

DNA-binding transcriptional regulator ChbR; Provisional


Pssm-ID: 182362 [Multi-domain]  Cd Length: 278  Bit Score: 50.14  E-value: 4.82e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1496506465 221 HLNRSLKQVTGKTTTTLINERVVSEAKAMLQHTDWNISDIAYALGFEYPTYFNNFFRKVTGTNPSGYR 288
Cdd:PRK10296  204 YLTRATRRYYGKTPMQIINEIRINFAKKQLEMTNYSVTDIAFEAGYSSPSLFIKTFKKLTSFTPGSYR 271
PRK13500 PRK13500
HTH-type transcriptional activator RhaR;
210-288 2.29e-06

HTH-type transcriptional activator RhaR;


Pssm-ID: 184091 [Multi-domain]  Cd Length: 312  Bit Score: 48.17  E-value: 2.29e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1496506465 210 EYADTLALHPNHLNRSLKQVTGKTTTTLINERVVSEAKAMLQHTDWNISDIAYALGFEYPTYFNNFFRKVTGTNPSGYR 288
Cdd:PRK13500  227 KFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLLQHSRLLISDISTECGFEDSNYFSVVFTRETGMTPSQWR 305
PRK13501 PRK13501
HTH-type transcriptional activator RhaR;
218-288 2.46e-06

HTH-type transcriptional activator RhaR;


Pssm-ID: 184092 [Multi-domain]  Cd Length: 290  Bit Score: 47.98  E-value: 2.46e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1496506465 218 HPNHLN-RSLKQV----TGKTTTTLINERVVSEAKAMLQHTDWNISDIAYALGFEYPTYFNNFFRKVTGTNPSGYR 288
Cdd:PRK13501  200 HKNQLVeRSLKQLfrqqTGMSISHYLRQIRLCHAKCLLRGSEHRISDIAARCGFEDSNYFSAVFTREAGMTPRDYR 275
PRK13502 PRK13502
HTH-type transcriptional activator RhaR;
222-288 6.71e-06

HTH-type transcriptional activator RhaR;


Pssm-ID: 184093 [Multi-domain]  Cd Length: 282  Bit Score: 46.59  E-value: 6.71e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1496506465 222 LNRSLKQVTGKTTTTLINERVVSEAKAMLQHTDWNISDIAYALGFEYPTYFNNFFRKVTGTNPSGYR 288
Cdd:PRK13502  209 LRQQFRAQTGMTINQYLRQVRICHAQYLLQHSPLMISEISMQCGFEDSNYFSVVFTRETGMTPSQWR 275
ftrA PRK09393
transcriptional activator FtrA; Provisional
 212-288 2.78e-05

transcriptional activator FtrA; Provisional


Pssm-ID: 181818 [Multi-domain]  Cd Length: 322  Bit Score: 44.95  E-value: 2.78e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1496506465 212 ADTLALHPNHLNRSLKQVTGKTTTT-LINERVvSEAKAMLQHTDWNISDIAYALGFEYPTYFNNFFRKVTGTNPSGYR 288
Cdd:PRK09393  241 AARAAMSPRTFLRRFEAATGMTPAEwLLRERL-ARARDLLESSALSIDQIAERAGFGSEESLRHHFRRRAATSPAAYR 317
PRK15186 PRK15186
AraC family transcriptional regulator; Provisional
 148-287 5.41e-05

AraC family transcriptional regulator; Provisional


Pssm-ID: 185108 [Multi-domain]  Cd Length: 291  Bit Score: 43.90  E-value: 5.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496506465 148 KDELIRNYINLIIHE----SLKMQPSENfnkhkNAASRIANVFLELLERQFPIespdlplklrsaQEYADTLALHPNHLN 223
Cdd:PRK15186  153 KEYLIRFLLSEFIYEpeafALFRELSQN-----TLAENIYNIIISDISRKWAL------------KDISDSLYMSCSTLK 215

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1496506465 224 RSLKQVTGKTTTTLINERVvSEAKAMLQHTDWNISDIAYALGFEYPTYFNNFFRKVTGTNPSGY 287
Cdd:PRK15186  216 RKLKQENTSFSEVYLNARM-NKATKLLRNSEYNITRVAYMCGYDSASYFTCVFKKHFKTTPSEF 278
PRK10219 PRK10219
superoxide response transcriptional regulator SoxS;
221-288 1.85e-04

superoxide response transcriptional regulator SoxS;


Pssm-ID: 182314 [Multi-domain]  Cd Length: 107  Bit Score: 39.91  E-value: 1.85e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1496506465 221 HLNRSLKQVTGKTTTTLINERVVSEAKAMLQHTDWNISDIAYALGFEYPTYFNNFFRKVTGTNPSGYR 288
Cdd:PRK10219   37 YLQRMFRTVTHQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRRQFDRTPSDYR 104
HTH_AraC pfam00165
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ...
 252-288 2.00e-03

Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added.


Pssm-ID: 425497 [Multi-domain]  Cd Length: 42  Bit Score: 35.21  E-value: 2.00e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1496506465 252 HTDWNISDIAYALGFEyPTYFNNFFRKVTGTNPSGYR 288
Cdd:pfam00165   6 STNLTIADIADELGFS-RSYFSRLFKKYTGVTPSQYR 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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