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Conserved domains on  [gi|1511376714|ref|WP_123059914|]
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DUF1983 domain-containing protein, partial [Escherichia sp. MOD1-EC6100]

Protein Classification

DUF1983 and DUF3672 domain-containing protein( domain architecture ID 10558331)

DUF1983 and DUF3672 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3672 super family cl13808
Fibronectin type III protein; This domain family is found in bacteria and viruses, and is ...
 136-285 2.87e-33

Fibronectin type III protein; This domain family is found in bacteria and viruses, and is typically between 126 and 146 amino acids in length. The family is found in association with pfam09327, pfam00041. There are two completely conserved G residues that may be functionally important. Many of the proteins in this family are annotated as fibronectin type III however there is little accompanying literature to confirm this.


The actual alignment was detected with superfamily member pfam12421:

Pssm-ID: 289206  Cd Length: 133  Bit Score: 119.30  E-value: 2.87e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511376714 136 LTSDGKLTAKNADISGSVNANSGTLNNVTINQNCTIKGMLEATQVRGDFVKAVSKAFPKKVG-TWGNTETPNGTVTVTis 214
Cdd:pfam12421   1 LTPDGHLTAKNGDFRGSINANSGTLNNVTIAENCTISGTLRAEKILGDIVKAGVWEFPYVREpASSNHRYFSGTLTVP-- 78

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1511376714 215 ddhnfdrQIIIPPIIFNGIAYddpgSGNNPGGTRYtgygFEVRKNGVLIaSRETKGAIPGSYSAVIDMPSG 285
Cdd:pfam12421  79 -------SIVVIPYTFIGSDR----GVNGTYSWCF----IEVKVNGVDI-YRGTASSSGQSSNSTYDMPAG 133
DUF1983 pfam09327
Domain of unknown function (DUF1983); Members of this family of functionally uncharacterized ...
 32-106 2.65e-22

Domain of unknown function (DUF1983); Members of this family of functionally uncharacterized domains are found in various bacteriophage host specificity proteins.


:

Pssm-ID: 430529  Cd Length: 75  Bit Score: 88.51  E-value: 2.65e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1511376714  32 LEEFSKEWKDANDKWNAMWGVKIEQTKDGKHYVAGIGLSMEDTEEGKLSQFLVAANRIAFIDPANGNETPMFVAQ 106
Cdd:pfam09327   1 IQQKSTAVADLDGKLSAMYSIKAQVKANGQKYVAGIALGAESGGGVTTSQVLFMADRFAIVNPANGNVTPPFVVQ 75
 
Name Accession Description Interval E-value
DUF3672 pfam12421
Fibronectin type III protein; This domain family is found in bacteria and viruses, and is ...
 136-285 2.87e-33

Fibronectin type III protein; This domain family is found in bacteria and viruses, and is typically between 126 and 146 amino acids in length. The family is found in association with pfam09327, pfam00041. There are two completely conserved G residues that may be functionally important. Many of the proteins in this family are annotated as fibronectin type III however there is little accompanying literature to confirm this.


Pssm-ID: 289206  Cd Length: 133  Bit Score: 119.30  E-value: 2.87e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511376714 136 LTSDGKLTAKNADISGSVNANSGTLNNVTINQNCTIKGMLEATQVRGDFVKAVSKAFPKKVG-TWGNTETPNGTVTVTis 214
Cdd:pfam12421   1 LTPDGHLTAKNGDFRGSINANSGTLNNVTIAENCTISGTLRAEKILGDIVKAGVWEFPYVREpASSNHRYFSGTLTVP-- 78

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1511376714 215 ddhnfdrQIIIPPIIFNGIAYddpgSGNNPGGTRYtgygFEVRKNGVLIaSRETKGAIPGSYSAVIDMPSG 285
Cdd:pfam12421  79 -------SIVVIPYTFIGSDR----GVNGTYSWCF----IEVKVNGVDI-YRGTASSSGQSSNSTYDMPAG 133
DUF1983 pfam09327
Domain of unknown function (DUF1983); Members of this family of functionally uncharacterized ...
 32-106 2.65e-22

Domain of unknown function (DUF1983); Members of this family of functionally uncharacterized domains are found in various bacteriophage host specificity proteins.


Pssm-ID: 430529  Cd Length: 75  Bit Score: 88.51  E-value: 2.65e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1511376714  32 LEEFSKEWKDANDKWNAMWGVKIEQTKDGKHYVAGIGLSMEDTEEGKLSQFLVAANRIAFIDPANGNETPMFVAQ 106
Cdd:pfam09327   1 IQQKSTAVADLDGKLSAMYSIKAQVKANGQKYVAGIALGAESGGGVTTSQVLFMADRFAIVNPANGNVTPPFVVQ 75
 
Name Accession Description Interval E-value
DUF3672 pfam12421
Fibronectin type III protein; This domain family is found in bacteria and viruses, and is ...
 136-285 2.87e-33

Fibronectin type III protein; This domain family is found in bacteria and viruses, and is typically between 126 and 146 amino acids in length. The family is found in association with pfam09327, pfam00041. There are two completely conserved G residues that may be functionally important. Many of the proteins in this family are annotated as fibronectin type III however there is little accompanying literature to confirm this.


Pssm-ID: 289206  Cd Length: 133  Bit Score: 119.30  E-value: 2.87e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1511376714 136 LTSDGKLTAKNADISGSVNANSGTLNNVTINQNCTIKGMLEATQVRGDFVKAVSKAFPKKVG-TWGNTETPNGTVTVTis 214
Cdd:pfam12421   1 LTPDGHLTAKNGDFRGSINANSGTLNNVTIAENCTISGTLRAEKILGDIVKAGVWEFPYVREpASSNHRYFSGTLTVP-- 78

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1511376714 215 ddhnfdrQIIIPPIIFNGIAYddpgSGNNPGGTRYtgygFEVRKNGVLIaSRETKGAIPGSYSAVIDMPSG 285
Cdd:pfam12421  79 -------SIVVIPYTFIGSDR----GVNGTYSWCF----IEVKVNGVDI-YRGTASSSGQSSNSTYDMPAG 133
DUF1983 pfam09327
Domain of unknown function (DUF1983); Members of this family of functionally uncharacterized ...
 32-106 2.65e-22

Domain of unknown function (DUF1983); Members of this family of functionally uncharacterized domains are found in various bacteriophage host specificity proteins.


Pssm-ID: 430529  Cd Length: 75  Bit Score: 88.51  E-value: 2.65e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1511376714  32 LEEFSKEWKDANDKWNAMWGVKIEQTKDGKHYVAGIGLSMEDTEEGKLSQFLVAANRIAFIDPANGNETPMFVAQ 106
Cdd:pfam09327   1 IQQKSTAVADLDGKLSAMYSIKAQVKANGQKYVAGIALGAESGGGVTTSQVLFMADRFAIVNPANGNVTPPFVVQ 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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