|
Name |
Accession |
Description |
Interval |
E-value |
| IAT_beta |
pfam11924 |
Inverse autotransporter, beta-domain; This is a family of beta-barrel porin-like outer ... |
55-334 |
9.33e-121 |
|
Inverse autotransporter, beta-domain; This is a family of beta-barrel porin-like outer membrane proteins from enteropathogenic Gram-negative bacteria. Intimins and invasins are virulence factors produced by pathogenic Gram-negative bacteria. They carry C-terminal extracellular passenger domains that are involved in adhesion to host cells and N-terminal beta domains that are embedded in the outer membrane. This family represents the beta-barrel porin-like domain in the outer membrane that can be found in intimins, invasins and some inverse autotransporters.
:
Pssm-ID: 432192 [Multi-domain] Cd Length: 279 Bit Score: 373.96 E-value: 9.33e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 55 EHANKVASFAASAGQSLANNNASSFAVNTLSTQATKEVVDWLQQYGNARIKLNVDDSFSLKDSSFDFLYPWLDTQDYVLF 134
Cdd:pfam11924 1 SSASQIGSLLSEDDTGEQRNYAKSQIKDAVLSEANSQLESWLSPFGNAQVQLGVDSDGSFTGSSLDLLVPLYDNDRGLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 135 SQTSLHRTDDRNQTNIGLGIRHFtPDNAMLGANVFYDYDLSRSHSRAGFGVEYWRDYFRLGVNTYFGLSDWKNSRDIDDY 214
Cdd:pfam11924 81 SQLGLRRKDDRTTVNLGLGQRWF-VDGWMLGANTFYDYDLTRSHSRAGVGAEAWRDYLKLSANYYFPLSGWKNSTDNNDY 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 215 LERPANGWDFSAEGWLPAYPQLGASIQFEKYYGKNVGLFGSDNLQENPYAVTGGISYTPVPLIKFSAQHKQGQSNTHDTT 294
Cdd:pfam11924 160 EERPANGWDVRAQGYLPAYPQLGASLKYEQYFGDEVDLFGDGKRQADPSAVTLGLNYTPVPLVTLSAEHKQGKGGKSDTQ 239
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1518432237 295 FGVEFNYRPGVSLAEQLSSDNVAVMREVQNRRYDFVERNN 334
Cdd:pfam11924 240 LGLTLNYRFGVPLSKQLDPDNVAASRSLAGSRYDLVERNN 279
|
|
| Ve_IatC_Nterm super family |
cl49127 |
inverse autotransporter adhesin IatC N-terminal domain; The inverse autotransporter (type Ve ... |
29-800 |
5.07e-117 |
|
inverse autotransporter adhesin IatC N-terminal domain; The inverse autotransporter (type Ve secretion protein) IatC contains a central region that is variable in the number of repeats seen, and averages about 3000 amino acids in length. This HMM describes a mostly non-repetitive region N-teminal to the architectural differences from different repeat counts are seen. IatC can contribute to biofilm formation.
The actual alignment was detected with superfamily member NF040978:
Pssm-ID: 468908 [Multi-domain] Cd Length: 1065 Bit Score: 389.55 E-value: 5.07e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 29 VSLSLIPANSFASSGNKDVTQIYASDEHANKVASFAASAGQSLANN----NASSFAVNTLSTQATKEVVDWLQQYGNARI 104
Cdd:NF040978 114 IDVPLINSNSPEARNLKAMQMERDGKDPQMQVAEMAQQSGTLLARDmdseQAASMARGWVASSASAQATDWLSRWGTARV 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 105 KLNVDDSFSLKDSSFDFLYPWLDTQDYVLFSQTSLHRTDDRNQTNIGLGIRHFTpDNAMLGANVFYDYDLSRSHSRAGFG 184
Cdd:NF040978 194 SLGVDEDFSLKSSSFEFLHPWYETPDNLVFSQHTLHRTDDRTQTNHGIGWRYFT-SSWMSGVNMFIDHDLTRYHTRTGMG 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 185 VEYWRDYFRLGVNTYFGLSDWKNSRDID-DYLERPANGWDFSAEGWLPAYPQLGASIQFEKYYGKNVGLFGSDNLQENPY 263
Cdd:NF040978 273 VEYWRDYLKLSGNGYLRLSNWRSAPELDnDYEARPANGWDLRAEGWLPAWPQLGGKLVYEQYYGDEVALFGKDERQNDPH 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 264 AVTGGISYTPVPLIKFSAQHKQGQSNTHDTTFGVEFNYRPGVSLAEQLSSDNVAVMREVQNRRYDFVERNNNIVLEYKKK 343
Cdd:NF040978 353 AITAGLSYTPVPLISFSAEQRQGKQGENDTRIGMELTLQPGHSLQKQLDPAEVAARRSLAGSRYDLVDRNNNIVLEYRKK 432
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 344 HALKISLPESVQGEGESIIPVTLTINNASgGIKSVQWNDSAFTAAGGKISGNGTSWQITLPAYK----SEGVNSWNVGAT 419
Cdd:NF040978 433 ELVRLTLTDPLKGKPGEVKSLVSSLQTKY-ALKGYDIEAAALQSAGGKVAVSGKDIQVTIPPYRftamPETDNTYPIAVT 511
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 420 VQDNRGNVSNYAVMNISVTDS*VSTADSSFTLDgdsSPTISADSQSTYPIVLSLKDSNGKALTGLAddIEMSVEFTADSn 499
Cdd:NF040978 512 AEDSKGNFSRREESMVVVEKPTLSLADSTLSVD---LQILLADGKSISTLTYTARDSSGKPIPGMT--LKTHAKGLQDF- 585
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 500 sarqretvtapSLGAVEEISAGVYRSVL*AGSQAGTVRVTAKVQG----KTFTL*IKQTATTEpdSEVSAVLTAAPAEQV 575
Cdd:NF040978 586 -----------ALSEWKDNGNGTYTQIVTAGKTSGALSLMPQFNGddiaKTPAL-IAIVANMA--SRADSMIETDQDNYV 651
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 576 VGYNINLQLAVKDSQGNAITGDNTLSFYAL----NQAEGVEFGTvTEKDGVYSATVTSKRAG-KITIGVK--------SD 642
Cdd:NF040978 652 AGKPIGVKVTLKDDNGNGVTGRKELLKQAVkvdnTKADAVSAWT-EESEGIYKANYTAHLIGdKLTAQLTmpgwqtkhSD 730
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 643 SHDFSGvkkeitfieDRQQVTFSQFEASQNNALADgKQRNMVTVSLADRFGNVVPGYAVTLSLPAGITQVGGEHA--VST 720
Cdd:NF040978 731 AFSIAG---------DKDTAKIAAMQITANNAVAR-RDHNTVAVTVRDVHQNLLQGQNVTFTVVNGAAVFADPNGgiVTT 800
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 721 DENGNAIFALISSTPGSYVITAHA-GSQMSTE----------LTVTF--------ASNMTGASLSLTPESSSLISNIPAN 781
Cdd:NF040978 801 DKDGIASVNLASDQAVNSLIKAEInGSSQSVEvsfitgdisqLTSTIktddvsytAGGKIKVSVTLMDEQKNLVKGMASL 880
|
810
....*....|....*....
gi 1518432237 782 GKDAAVLDVQLTNTNASVN 800
Cdd:NF040978 881 LAGSGVVEVSGTDKNETGN 899
|
|
| Invasin_D3 super family |
cl23771 |
Invasin, domain 3; Members of this family adopt a structure consisting of an ... |
868-947 |
2.27e-07 |
|
Invasin, domain 3; Members of this family adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, arranged in a Greek-key topology. It forms part of the extracellular region of the protein, which can be expressed as a soluble protein (Inv497) that binds integrins and promotes subsequent uptake by cells when attached to bacteria.
The actual alignment was detected with superfamily member smart00634:
Pssm-ID: 474048 [Multi-domain] Cd Length: 92 Bit Score: 49.63 E-value: 2.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 868 AELNMSVSKQEIVADGSENATVNIQLVDANNNAFTG-EVDLTITPSTGASLTSSNLQLDAHGQATTQFTASKSGQYTIQA 946
Cdd:smart00634 1 SVTTLTADKDTAVANGSDAITLTATVTDANGNPVAGqEVTFTTPSGGALTLSKGTATTDANGIATVTLTSTTAGVYTVTA 80
|
.
gi 1518432237 947 E 947
Cdd:smart00634 81 S 81
|
|
| Invasin_D3 super family |
cl23771 |
Invasin, domain 3; Members of this family adopt a structure consisting of an ... |
778-854 |
2.55e-07 |
|
Invasin, domain 3; Members of this family adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, arranged in a Greek-key topology. It forms part of the extracellular region of the protein, which can be expressed as a soluble protein (Inv497) that binds integrins and promotes subsequent uptake by cells when attached to bacteria.
The actual alignment was detected with superfamily member smart00634:
Pssm-ID: 474048 [Multi-domain] Cd Length: 92 Bit Score: 49.63 E-value: 2.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 778 IPANGKDAAVLDVQLTNTNAS-VNGQKIQLITSSEGLSVPTN--IVTDSTGHVSVPLTTVKAGEYTVTARVTDGSHSVES 854
Cdd:smart00634 12 AVANGSDAITLTATVTDANGNpVAGQEVTFTTPSGGALTLSKgtATTDANGIATVTLTSTTAGVYTVTASLENGSSSVKQ 91
|
|
| Invasin_D3 super family |
cl23771 |
Invasin, domain 3; Members of this family adopt a structure consisting of an ... |
992-1064 |
2.82e-04 |
|
Invasin, domain 3; Members of this family adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, arranged in a Greek-key topology. It forms part of the extracellular region of the protein, which can be expressed as a soluble protein (Inv497) that binds integrins and promotes subsequent uptake by cells when attached to bacteria.
The actual alignment was detected with superfamily member smart00634:
Pssm-ID: 474048 [Multi-domain] Cd Length: 92 Bit Score: 41.16 E-value: 2.82e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1518432237 992 TLLLKSKSGEALSGRALNVKTSGPskyGALVVDKTTVTTDENGQATVSVHGRTVGSYKLTATLNELGSDVSAV 1064
Cdd:smart00634 23 TATVTDANGNPVAGQEVTFTTPSG---GALTLSKGTATTDANGIATVTLTSTTAGVYTVTASLENGSSSVKQV 92
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| IAT_beta |
pfam11924 |
Inverse autotransporter, beta-domain; This is a family of beta-barrel porin-like outer ... |
55-334 |
9.33e-121 |
|
Inverse autotransporter, beta-domain; This is a family of beta-barrel porin-like outer membrane proteins from enteropathogenic Gram-negative bacteria. Intimins and invasins are virulence factors produced by pathogenic Gram-negative bacteria. They carry C-terminal extracellular passenger domains that are involved in adhesion to host cells and N-terminal beta domains that are embedded in the outer membrane. This family represents the beta-barrel porin-like domain in the outer membrane that can be found in intimins, invasins and some inverse autotransporters.
Pssm-ID: 432192 [Multi-domain] Cd Length: 279 Bit Score: 373.96 E-value: 9.33e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 55 EHANKVASFAASAGQSLANNNASSFAVNTLSTQATKEVVDWLQQYGNARIKLNVDDSFSLKDSSFDFLYPWLDTQDYVLF 134
Cdd:pfam11924 1 SSASQIGSLLSEDDTGEQRNYAKSQIKDAVLSEANSQLESWLSPFGNAQVQLGVDSDGSFTGSSLDLLVPLYDNDRGLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 135 SQTSLHRTDDRNQTNIGLGIRHFtPDNAMLGANVFYDYDLSRSHSRAGFGVEYWRDYFRLGVNTYFGLSDWKNSRDIDDY 214
Cdd:pfam11924 81 SQLGLRRKDDRTTVNLGLGQRWF-VDGWMLGANTFYDYDLTRSHSRAGVGAEAWRDYLKLSANYYFPLSGWKNSTDNNDY 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 215 LERPANGWDFSAEGWLPAYPQLGASIQFEKYYGKNVGLFGSDNLQENPYAVTGGISYTPVPLIKFSAQHKQGQSNTHDTT 294
Cdd:pfam11924 160 EERPANGWDVRAQGYLPAYPQLGASLKYEQYFGDEVDLFGDGKRQADPSAVTLGLNYTPVPLVTLSAEHKQGKGGKSDTQ 239
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1518432237 295 FGVEFNYRPGVSLAEQLSSDNVAVMREVQNRRYDFVERNN 334
Cdd:pfam11924 240 LGLTLNYRFGVPLSKQLDPDNVAASRSLAGSRYDLVERNN 279
|
|
| Ve_IatC_Nterm |
NF040978 |
inverse autotransporter adhesin IatC N-terminal domain; The inverse autotransporter (type Ve ... |
29-800 |
5.07e-117 |
|
inverse autotransporter adhesin IatC N-terminal domain; The inverse autotransporter (type Ve secretion protein) IatC contains a central region that is variable in the number of repeats seen, and averages about 3000 amino acids in length. This HMM describes a mostly non-repetitive region N-teminal to the architectural differences from different repeat counts are seen. IatC can contribute to biofilm formation.
Pssm-ID: 468908 [Multi-domain] Cd Length: 1065 Bit Score: 389.55 E-value: 5.07e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 29 VSLSLIPANSFASSGNKDVTQIYASDEHANKVASFAASAGQSLANN----NASSFAVNTLSTQATKEVVDWLQQYGNARI 104
Cdd:NF040978 114 IDVPLINSNSPEARNLKAMQMERDGKDPQMQVAEMAQQSGTLLARDmdseQAASMARGWVASSASAQATDWLSRWGTARV 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 105 KLNVDDSFSLKDSSFDFLYPWLDTQDYVLFSQTSLHRTDDRNQTNIGLGIRHFTpDNAMLGANVFYDYDLSRSHSRAGFG 184
Cdd:NF040978 194 SLGVDEDFSLKSSSFEFLHPWYETPDNLVFSQHTLHRTDDRTQTNHGIGWRYFT-SSWMSGVNMFIDHDLTRYHTRTGMG 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 185 VEYWRDYFRLGVNTYFGLSDWKNSRDID-DYLERPANGWDFSAEGWLPAYPQLGASIQFEKYYGKNVGLFGSDNLQENPY 263
Cdd:NF040978 273 VEYWRDYLKLSGNGYLRLSNWRSAPELDnDYEARPANGWDLRAEGWLPAWPQLGGKLVYEQYYGDEVALFGKDERQNDPH 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 264 AVTGGISYTPVPLIKFSAQHKQGQSNTHDTTFGVEFNYRPGVSLAEQLSSDNVAVMREVQNRRYDFVERNNNIVLEYKKK 343
Cdd:NF040978 353 AITAGLSYTPVPLISFSAEQRQGKQGENDTRIGMELTLQPGHSLQKQLDPAEVAARRSLAGSRYDLVDRNNNIVLEYRKK 432
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 344 HALKISLPESVQGEGESIIPVTLTINNASgGIKSVQWNDSAFTAAGGKISGNGTSWQITLPAYK----SEGVNSWNVGAT 419
Cdd:NF040978 433 ELVRLTLTDPLKGKPGEVKSLVSSLQTKY-ALKGYDIEAAALQSAGGKVAVSGKDIQVTIPPYRftamPETDNTYPIAVT 511
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 420 VQDNRGNVSNYAVMNISVTDS*VSTADSSFTLDgdsSPTISADSQSTYPIVLSLKDSNGKALTGLAddIEMSVEFTADSn 499
Cdd:NF040978 512 AEDSKGNFSRREESMVVVEKPTLSLADSTLSVD---LQILLADGKSISTLTYTARDSSGKPIPGMT--LKTHAKGLQDF- 585
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 500 sarqretvtapSLGAVEEISAGVYRSVL*AGSQAGTVRVTAKVQG----KTFTL*IKQTATTEpdSEVSAVLTAAPAEQV 575
Cdd:NF040978 586 -----------ALSEWKDNGNGTYTQIVTAGKTSGALSLMPQFNGddiaKTPAL-IAIVANMA--SRADSMIETDQDNYV 651
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 576 VGYNINLQLAVKDSQGNAITGDNTLSFYAL----NQAEGVEFGTvTEKDGVYSATVTSKRAG-KITIGVK--------SD 642
Cdd:NF040978 652 AGKPIGVKVTLKDDNGNGVTGRKELLKQAVkvdnTKADAVSAWT-EESEGIYKANYTAHLIGdKLTAQLTmpgwqtkhSD 730
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 643 SHDFSGvkkeitfieDRQQVTFSQFEASQNNALADgKQRNMVTVSLADRFGNVVPGYAVTLSLPAGITQVGGEHA--VST 720
Cdd:NF040978 731 AFSIAG---------DKDTAKIAAMQITANNAVAR-RDHNTVAVTVRDVHQNLLQGQNVTFTVVNGAAVFADPNGgiVTT 800
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 721 DENGNAIFALISSTPGSYVITAHA-GSQMSTE----------LTVTF--------ASNMTGASLSLTPESSSLISNIPAN 781
Cdd:NF040978 801 DKDGIASVNLASDQAVNSLIKAEInGSSQSVEvsfitgdisqLTSTIktddvsytAGGKIKVSVTLMDEQKNLVKGMASL 880
|
810
....*....|....*....
gi 1518432237 782 GKDAAVLDVQLTNTNASVN 800
Cdd:NF040978 881 LAGSGVVEVSGTDKNETGN 899
|
|
| PRK15318 |
PRK15318 |
intimin-like protein SinH; Provisional |
24-481 |
3.37e-105 |
|
intimin-like protein SinH; Provisional
Pssm-ID: 237943 [Multi-domain] Cd Length: 730 Bit Score: 348.09 E-value: 3.37e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 24 QILSPVSLSLIPANSFASSGNKDV----TQIYAS-----------DEHANKVASFAA--------SAGQSLANNN----- 75
Cdd:PRK15318 3 RWLRIIFLTFISGAAFAAPGADNSkeinVKSHESlpdlgsqsaeqEEQTNKGKSLKErgadyfinSATQGFENLTpeale 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 76 --ASSFAVNTLSTQATKEVVDWLQQYGNARIKLNVDDSFSLKDSSFDFLYPWLDTQDYVLFSQTSLHRTDDRNQTNIGLG 153
Cdd:PRK15318 83 sqARSYLQNQITSTAQSYLEDTLSPYGKVRTNLSVGEGGDLDGSSIDYFVPWYDNQSTVYFSQFSAQRKEDRTIGNIGLG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 154 IRhFTPDNAMLGANVFYDYDLSRSHSRAGFGVEYWRDYFRLGVNTYFGLSDWKNSRDIDDYLERPANGWDFSAEGWLPAY 233
Cdd:PRK15318 163 VR-QNFGKWLLGGNIFYDYDFTRGHRRLGLGTEAWTDYLKFSGNYYHPLSDWKDSEDFDFYEERPARGWDIRAEGWLPAY 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 234 PQLGASIQFEKYYGKNVGLFGSDNLQENPYAVTGGISYTPVPLIKFSAQHKQGQSNTHDTTFGVEFNYRPGVSLAEQLSS 313
Cdd:PRK15318 242 PQLGGKLVYEQYYGDEVALFGTDNLQKDPHAVTLGLKYQPVPLVTVGTDYKAGTGDNNDLSVNATLNYQFGTPLKDQLDP 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 314 DNVAVMREVQNRRYDFVERNNNIVLEYKKKHALKISLP---ESVQGEGESIIPVTL-----------TIN---NASGGIK 376
Cdd:PRK15318 322 DNVKAAHSLMGSRHDFVDRNNFIVLEYKEKDPLDVTLWlkaDATNEHPECVIKDTPeaavglekckwTINaliNHHYKIV 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 377 SVQW---NDSAFTAAGGKIS------GNGTSWQITLPAYKS-------EGVNSWNVGATVQDNRGNVSNYAVMNISVTDS 440
Cdd:PRK15318 402 AASWqakNNAARTLVMPVVKanalteGNNNHWNLVLPAWQYasteeeqEALNTWRVRLALEDEKGNRQNSGVVEITVQQD 481
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 1518432237 441 ---*VSTADSSFTLDGDSSPTISADSQSTYPIVLSL---------KDSNGKAL 481
Cdd:PRK15318 482 rkiELIVNNIADVDRSNHSHEASAQADGVDGVVMDLditdsfgdnTDRNGNTL 534
|
|
| Ve_YrIlm_NTERM |
NF040981 |
YrIlm family inverse autotransporter adhesin N-terminal domain; |
36-408 |
2.50e-94 |
|
YrIlm family inverse autotransporter adhesin N-terminal domain;
Pssm-ID: 468911 [Multi-domain] Cd Length: 477 Bit Score: 310.48 E-value: 2.50e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 36 ANSFASSGNKDVTQIYASDEHanKVASFAASAGQSLANNNASSFAVNTLSTQATKE----VVDWLQQYGNARIKLNVDDS 111
Cdd:NF040981 96 ASPFSIDNDKNNTDIDIPLDH--ALAGHAQTGAAALASGDAAKSAAQLARSAANNEfnssAQQWLSQFGTAHVQLNVNDD 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 112 FSLKDSSFDFLYPWLDTQDYVLFSQTSLHRTDDRNQTNIGLGIRHFTPDnAMLGANVFYDYDLSRSHSRAGFGVEYWRDY 191
Cdd:NF040981 174 FHLDGSALDVLVPLYDNQSSILFTQLGARNKDSRNTLNIGAGVRAFLGD-WMYGMNTFFDNDVTGKNRRVGVGAEAWTDY 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 192 FRLGVNTYFGLSDWKNSRDIDDYLERPANGWDFSAEGWLPAYPQLGASIQFEKYYGKNVGLFGSDNLQENPYAVTGGISY 271
Cdd:NF040981 253 LKLSANSYFGTTDWHQSRDFADYNERPANGYDVRAEAYLPAYPQLGGKLMYEKYQGDEVALFGKDDRQKNPHAITAGINY 332
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 272 TPVPLIKFSAQHKQGQSNTHDTTFGVEFNYRPGVSLAEQLSSDNVAVMREVQNRRYDFVERNNNIVLEYKKKHALKISLP 351
Cdd:NF040981 333 TPIPLFTVGAEHRAGKGSHNDSRINLQFNYRLGESWQSHIDPSGVAASRTLAGSRYDLVERNNNIVLDYQKQDLIGLTLP 412
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1518432237 352 ESVQGEGESIIPVTLTINNASgGIKSVQWNDSAFTAAGGK-ISGNGTSWQITLPAYKS 408
Cdd:NF040981 413 EQVTGESSSSATVNAQVTSKY-GLERIEWDSAALMAAGGNlVQVSPQTVSVTLPPYQA 469
|
|
| BID_1 |
smart00634 |
Bacterial Ig-like domain (group 1); |
667-754 |
3.57e-11 |
|
Bacterial Ig-like domain (group 1);
Pssm-ID: 214751 [Multi-domain] Cd Length: 92 Bit Score: 60.42 E-value: 3.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 667 FEASQNNALADGKQRNMVTVSLADRFGNVVPGYAVTLSLPAGITQVGGEHAVSTDENGNAIFALISSTPGSYVITAHAGS 746
Cdd:smart00634 5 LTADKDTAVANGSDAITLTATVTDANGNPVAGQEVTFTTPSGGALTLSKGTATTDANGIATVTLTSTTAGVYTVTASLEN 84
|
....*...
gi 1518432237 747 QMSTELTV 754
Cdd:smart00634 85 GSSSVKQV 92
|
|
| Big_1 |
pfam02369 |
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like ... |
676-742 |
8.96e-09 |
|
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial surface proteins such as intimins and invasins involved in pathogenicity.
Pssm-ID: 460541 [Multi-domain] Cd Length: 64 Bit Score: 52.94 E-value: 8.96e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1518432237 676 ADGKQRNMVTVSLADRFGNVVPGYAVTLSLPAGITQVGgehAVSTDENGNAIFALISSTPGSYVITA 742
Cdd:pfam02369 1 ADGVDTNTVTATVTDANGNPVPGATVTFSASGGTLSAS---SGTTDANGQATVTLTSTKAGTVTVTA 64
|
|
| BID_1 |
smart00634 |
Bacterial Ig-like domain (group 1); |
868-947 |
2.27e-07 |
|
Bacterial Ig-like domain (group 1);
Pssm-ID: 214751 [Multi-domain] Cd Length: 92 Bit Score: 49.63 E-value: 2.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 868 AELNMSVSKQEIVADGSENATVNIQLVDANNNAFTG-EVDLTITPSTGASLTSSNLQLDAHGQATTQFTASKSGQYTIQA 946
Cdd:smart00634 1 SVTTLTADKDTAVANGSDAITLTATVTDANGNPVAGqEVTFTTPSGGALTLSKGTATTDANGIATVTLTSTTAGVYTVTA 80
|
.
gi 1518432237 947 E 947
Cdd:smart00634 81 S 81
|
|
| BID_1 |
smart00634 |
Bacterial Ig-like domain (group 1); |
778-854 |
2.55e-07 |
|
Bacterial Ig-like domain (group 1);
Pssm-ID: 214751 [Multi-domain] Cd Length: 92 Bit Score: 49.63 E-value: 2.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 778 IPANGKDAAVLDVQLTNTNAS-VNGQKIQLITSSEGLSVPTN--IVTDSTGHVSVPLTTVKAGEYTVTARVTDGSHSVES 854
Cdd:smart00634 12 AVANGSDAITLTATVTDANGNpVAGQEVTFTTPSGGALTLSKgtATTDANGIATVTLTSTTAGVYTVTASLENGSSSVKQ 91
|
|
| Big_1 |
pfam02369 |
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like ... |
780-843 |
1.85e-05 |
|
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial surface proteins such as intimins and invasins involved in pathogenicity.
Pssm-ID: 460541 [Multi-domain] Cd Length: 64 Bit Score: 43.31 E-value: 1.85e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1518432237 780 ANGKDAAVLDVQLTNTN-ASVNGQKIQLiTSSEGLSVPTNIVTDSTGHVSVPLTTVKAGEYTVTA 843
Cdd:pfam02369 1 ADGVDTNTVTATVTDANgNPVPGATVTF-SASGGTLSASSGTTDANGQATVTLTSTKAGTVTVTA 64
|
|
| Big_1 |
pfam02369 |
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like ... |
881-946 |
5.90e-05 |
|
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial surface proteins such as intimins and invasins involved in pathogenicity.
Pssm-ID: 460541 [Multi-domain] Cd Length: 64 Bit Score: 42.15 E-value: 5.90e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1518432237 881 ADGSENATVNIQLVDANNNAFTG-EVDLTitpSTGASLTSSNLQLDAHGQATTQFTASKSGQYTIQA 946
Cdd:pfam02369 1 ADGVDTNTVTATVTDANGNPVPGaTVTFS---ASGGTLSASSGTTDANGQATVTLTSTKAGTVTVTA 64
|
|
| ClfA |
COG4932 |
Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing ... |
432-1113 |
8.88e-05 |
|
Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443959 [Multi-domain] Cd Length: 689 Bit Score: 46.89 E-value: 8.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 432 VMNISVTDS*VSTADSSFTLDGDSSPTISADSQSTYPIVLSLKDSNGKALTGLADDIEMSVEFTADSNSARQRETVTAPS 511
Cdd:COG4932 6 GAGTGVGTVIVEGAGSGSLVAVTTGAVLGLALGSTGGTAGSAAAINSAPATGTATGTSAGATAVIVIAAGLTATPTETAS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 512 LGAVEEIS--AGVYRSVL*AGSQAGTVRVTAKVQGKTFTL*IKQTATTEPDSEVSAVLTAAPAEQVVGYNINLQLAVKDS 589
Cdd:COG4932 86 GLGGDATVttTANVAKVTNGAAANLTVNADGTASNAGTLAKGAETATGNLDGDAGDVTVTAAATDGVNDVDGNGASVTDS 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 590 QGNAITGDNTLSFYAlnqaEGVEFgTVTEKDGVYSATVTSKRAGKITI-GVKSDSHDFSGVKKEITFIEDRQQVTFSQFE 668
Cdd:COG4932 166 VTLKKVDDGDTGKPL----PGATF-TLYDSDGTLVKTVTTDADGKYTFtDLPPGTYTLTETKAPEGYVLDTKDPTGATIT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 669 AS------QNNALADGKQRNMVTVSL---ADRFGNVVPGYAVTLSLPAGITQVGGEhAVSTDENGNAIFALIssTPGSYV 739
Cdd:COG4932 241 VTvnaggtVTVTLKNTPKYTKGSVTVtktDADTGEPLAGATFTLTDADGNTVVTTT-VTVTDADGSYTFTDL--PPGTYT 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 740 IT---AHAGSQMSTE-LTVTFASNMTGaSLSLTPESSSLISNipangkDAAVLDVQLTNTNASVNGQKIQLiTSSEGLSV 815
Cdd:COG4932 318 VTetkAPAGYDLDGEaVKVTITAGQTT-TVTVTNGNNEVKTG------SVTLTKVDADDGEAPLAGAEFTL-TDADGTVV 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 816 PTnIVTDSTGHVSVplTTVKAGEYTVTARVTDGSHSVESGSVKLTFVPDvasaelnmsvSKQEIVADGSENATVNIQLVD 895
Cdd:COG4932 390 AT-ITTDADGTASF--KGLAPGTYTLTETKAPEGYTLDSTPITVTVTDG----------GTGAIDTITNERKKGSVQVTK 456
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 896 ANNNAFTGEVDLTITPSTGASLTSSNLQLDA--HGQATTQFTASKSGQYTIQA----EYVLDGKRITASQNIDAVTDVKG 969
Cdd:COG4932 457 VDAPLAGATFTLTDADGTVVTLTTDADLAGAtfEADGKVVTTTDASGKYTFKNlppgTYTDAGGSATVITDDTDGTVGDE 536
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 970 AVLEITSSASSAVVSDTNNLVFTLLLKSKSGEALSG--RALNVKTSGPSKYGALVVDKTTVTTDENGQATVSVHGRTVGS 1047
Cdd:COG4932 537 ATGTDPEVTVTGKSTTTTPDVALLTNLGTTEDALTSlaKTGDEVGKGLTLTTTTTVDTLDTNATEKTETVTVTAQLIGVK 616
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1518432237 1048 YKLTATLNELGSDVSAVKSFSLYADDANGVLTLTKDPGYETNDGSPVGIYARFVDHFGNPLSGTVE 1113
Cdd:COG4932 617 TTKLTDTTDPKGGTVEEATTTGGTANTGKTGTDLTDDTTVTSTTNTATSVEDTTDVDNKDAFTGGT 682
|
|
| BID_1 |
smart00634 |
Bacterial Ig-like domain (group 1); |
992-1064 |
2.82e-04 |
|
Bacterial Ig-like domain (group 1);
Pssm-ID: 214751 [Multi-domain] Cd Length: 92 Bit Score: 41.16 E-value: 2.82e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1518432237 992 TLLLKSKSGEALSGRALNVKTSGPskyGALVVDKTTVTTDENGQATVSVHGRTVGSYKLTATLNELGSDVSAV 1064
Cdd:smart00634 23 TATVTDANGNPVAGQEVTFTTPSG---GALTLSKGTATTDANGIATVTLTSTTAGVYTVTASLENGSSSVKQV 92
|
|
| YfaS |
COG2373 |
Uncharacterized conserved protein YfaS, alpha-2-macroglobulin family [General function ... |
788-1159 |
7.70e-04 |
|
Uncharacterized conserved protein YfaS, alpha-2-macroglobulin family [General function prediction only];
Pssm-ID: 441940 [Multi-domain] Cd Length: 1605 Bit Score: 43.92 E-value: 7.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 788 LDVQLTN--TNASVNGQKIQLItSSEGLSVPTnIVTDSTGHVSVPLTTVKAGEYTVTA-RVTDGSHsvesgsvkLTFVPD 864
Cdd:COG2373 278 LLVFVTSlsTGKPVAGAEVELY-DRNGQVLAT-ATTDADGLARFPAGDRGEGGRAPALlVARKGGD--------FAFLDL 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 865 VASAELnmSVSKQEIvaDGSENA------------------TVNIQLV--DANNNAFTG-EVDLTITPSTGASLTSSNLQ 923
Cdd:COG2373 348 DDGPAL--DLSDFDV--GGRAPPggldaflftdrgiyrpgeTVHLKALlrDADGKAPAGlPLTLELTDPDGKEVRRQTLT 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 924 LDAHGQATTQFTASKS---GQYTIQAEyvLDGKRITASQNIdAVTDVKGAVLEITSSASSAVVSDTNNLVFTLLLKSKSG 1000
Cdd:COG2373 424 LNEFGGYSFSFPLPEDaptGTWRLELY--VDPKPALGSKSF-RVEEFKPPRFKVDLTLDKEPLKPGDPVTVTVDARYLFG 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 1001 EALSGRALNVK---TSGPSKYGAL---------------VVDKTTVTTDENGQATVSVH------GRTVGSYKLTATLNE 1056
Cdd:COG2373 501 APAAGLKVEGEvtlRPARTAFPGYpgyrfgdpdeefepeELDLGEGTLDADGKASLSLPlpdapdAPGPLRATVEASVFE 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 1057 LGSD-VSAVKSFSLYADDAN-GVltltKDPGYETND-GSPVGIYARFVDHFGNPLSG---TVEF-------------SAG 1117
Cdd:COG2373 581 SGGRpVTRSATVPVHPADFYvGI----RLPLFDGDPeGAPATFEVVAVDPDGKPVAGkglKVELyreewryvwyksdDGG 656
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 1518432237 1118 SEDSPDSQRVKMEPATVTLHWTGNAASEFSTYESGYHWIKAK 1159
Cdd:COG2373 657 WRYESQEKEEPVAEGTLTTGADGPASLSLTPVEWGRYRLEVK 698
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| IAT_beta |
pfam11924 |
Inverse autotransporter, beta-domain; This is a family of beta-barrel porin-like outer ... |
55-334 |
9.33e-121 |
|
Inverse autotransporter, beta-domain; This is a family of beta-barrel porin-like outer membrane proteins from enteropathogenic Gram-negative bacteria. Intimins and invasins are virulence factors produced by pathogenic Gram-negative bacteria. They carry C-terminal extracellular passenger domains that are involved in adhesion to host cells and N-terminal beta domains that are embedded in the outer membrane. This family represents the beta-barrel porin-like domain in the outer membrane that can be found in intimins, invasins and some inverse autotransporters.
Pssm-ID: 432192 [Multi-domain] Cd Length: 279 Bit Score: 373.96 E-value: 9.33e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 55 EHANKVASFAASAGQSLANNNASSFAVNTLSTQATKEVVDWLQQYGNARIKLNVDDSFSLKDSSFDFLYPWLDTQDYVLF 134
Cdd:pfam11924 1 SSASQIGSLLSEDDTGEQRNYAKSQIKDAVLSEANSQLESWLSPFGNAQVQLGVDSDGSFTGSSLDLLVPLYDNDRGLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 135 SQTSLHRTDDRNQTNIGLGIRHFtPDNAMLGANVFYDYDLSRSHSRAGFGVEYWRDYFRLGVNTYFGLSDWKNSRDIDDY 214
Cdd:pfam11924 81 SQLGLRRKDDRTTVNLGLGQRWF-VDGWMLGANTFYDYDLTRSHSRAGVGAEAWRDYLKLSANYYFPLSGWKNSTDNNDY 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 215 LERPANGWDFSAEGWLPAYPQLGASIQFEKYYGKNVGLFGSDNLQENPYAVTGGISYTPVPLIKFSAQHKQGQSNTHDTT 294
Cdd:pfam11924 160 EERPANGWDVRAQGYLPAYPQLGASLKYEQYFGDEVDLFGDGKRQADPSAVTLGLNYTPVPLVTLSAEHKQGKGGKSDTQ 239
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1518432237 295 FGVEFNYRPGVSLAEQLSSDNVAVMREVQNRRYDFVERNN 334
Cdd:pfam11924 240 LGLTLNYRFGVPLSKQLDPDNVAASRSLAGSRYDLVERNN 279
|
|
| Ve_IatC_Nterm |
NF040978 |
inverse autotransporter adhesin IatC N-terminal domain; The inverse autotransporter (type Ve ... |
29-800 |
5.07e-117 |
|
inverse autotransporter adhesin IatC N-terminal domain; The inverse autotransporter (type Ve secretion protein) IatC contains a central region that is variable in the number of repeats seen, and averages about 3000 amino acids in length. This HMM describes a mostly non-repetitive region N-teminal to the architectural differences from different repeat counts are seen. IatC can contribute to biofilm formation.
Pssm-ID: 468908 [Multi-domain] Cd Length: 1065 Bit Score: 389.55 E-value: 5.07e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 29 VSLSLIPANSFASSGNKDVTQIYASDEHANKVASFAASAGQSLANN----NASSFAVNTLSTQATKEVVDWLQQYGNARI 104
Cdd:NF040978 114 IDVPLINSNSPEARNLKAMQMERDGKDPQMQVAEMAQQSGTLLARDmdseQAASMARGWVASSASAQATDWLSRWGTARV 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 105 KLNVDDSFSLKDSSFDFLYPWLDTQDYVLFSQTSLHRTDDRNQTNIGLGIRHFTpDNAMLGANVFYDYDLSRSHSRAGFG 184
Cdd:NF040978 194 SLGVDEDFSLKSSSFEFLHPWYETPDNLVFSQHTLHRTDDRTQTNHGIGWRYFT-SSWMSGVNMFIDHDLTRYHTRTGMG 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 185 VEYWRDYFRLGVNTYFGLSDWKNSRDID-DYLERPANGWDFSAEGWLPAYPQLGASIQFEKYYGKNVGLFGSDNLQENPY 263
Cdd:NF040978 273 VEYWRDYLKLSGNGYLRLSNWRSAPELDnDYEARPANGWDLRAEGWLPAWPQLGGKLVYEQYYGDEVALFGKDERQNDPH 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 264 AVTGGISYTPVPLIKFSAQHKQGQSNTHDTTFGVEFNYRPGVSLAEQLSSDNVAVMREVQNRRYDFVERNNNIVLEYKKK 343
Cdd:NF040978 353 AITAGLSYTPVPLISFSAEQRQGKQGENDTRIGMELTLQPGHSLQKQLDPAEVAARRSLAGSRYDLVDRNNNIVLEYRKK 432
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 344 HALKISLPESVQGEGESIIPVTLTINNASgGIKSVQWNDSAFTAAGGKISGNGTSWQITLPAYK----SEGVNSWNVGAT 419
Cdd:NF040978 433 ELVRLTLTDPLKGKPGEVKSLVSSLQTKY-ALKGYDIEAAALQSAGGKVAVSGKDIQVTIPPYRftamPETDNTYPIAVT 511
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 420 VQDNRGNVSNYAVMNISVTDS*VSTADSSFTLDgdsSPTISADSQSTYPIVLSLKDSNGKALTGLAddIEMSVEFTADSn 499
Cdd:NF040978 512 AEDSKGNFSRREESMVVVEKPTLSLADSTLSVD---LQILLADGKSISTLTYTARDSSGKPIPGMT--LKTHAKGLQDF- 585
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 500 sarqretvtapSLGAVEEISAGVYRSVL*AGSQAGTVRVTAKVQG----KTFTL*IKQTATTEpdSEVSAVLTAAPAEQV 575
Cdd:NF040978 586 -----------ALSEWKDNGNGTYTQIVTAGKTSGALSLMPQFNGddiaKTPAL-IAIVANMA--SRADSMIETDQDNYV 651
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 576 VGYNINLQLAVKDSQGNAITGDNTLSFYAL----NQAEGVEFGTvTEKDGVYSATVTSKRAG-KITIGVK--------SD 642
Cdd:NF040978 652 AGKPIGVKVTLKDDNGNGVTGRKELLKQAVkvdnTKADAVSAWT-EESEGIYKANYTAHLIGdKLTAQLTmpgwqtkhSD 730
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 643 SHDFSGvkkeitfieDRQQVTFSQFEASQNNALADgKQRNMVTVSLADRFGNVVPGYAVTLSLPAGITQVGGEHA--VST 720
Cdd:NF040978 731 AFSIAG---------DKDTAKIAAMQITANNAVAR-RDHNTVAVTVRDVHQNLLQGQNVTFTVVNGAAVFADPNGgiVTT 800
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 721 DENGNAIFALISSTPGSYVITAHA-GSQMSTE----------LTVTF--------ASNMTGASLSLTPESSSLISNIPAN 781
Cdd:NF040978 801 DKDGIASVNLASDQAVNSLIKAEInGSSQSVEvsfitgdisqLTSTIktddvsytAGGKIKVSVTLMDEQKNLVKGMASL 880
|
810
....*....|....*....
gi 1518432237 782 GKDAAVLDVQLTNTNASVN 800
Cdd:NF040978 881 LAGSGVVEVSGTDKNETGN 899
|
|
| PRK15318 |
PRK15318 |
intimin-like protein SinH; Provisional |
24-481 |
3.37e-105 |
|
intimin-like protein SinH; Provisional
Pssm-ID: 237943 [Multi-domain] Cd Length: 730 Bit Score: 348.09 E-value: 3.37e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 24 QILSPVSLSLIPANSFASSGNKDV----TQIYAS-----------DEHANKVASFAA--------SAGQSLANNN----- 75
Cdd:PRK15318 3 RWLRIIFLTFISGAAFAAPGADNSkeinVKSHESlpdlgsqsaeqEEQTNKGKSLKErgadyfinSATQGFENLTpeale 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 76 --ASSFAVNTLSTQATKEVVDWLQQYGNARIKLNVDDSFSLKDSSFDFLYPWLDTQDYVLFSQTSLHRTDDRNQTNIGLG 153
Cdd:PRK15318 83 sqARSYLQNQITSTAQSYLEDTLSPYGKVRTNLSVGEGGDLDGSSIDYFVPWYDNQSTVYFSQFSAQRKEDRTIGNIGLG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 154 IRhFTPDNAMLGANVFYDYDLSRSHSRAGFGVEYWRDYFRLGVNTYFGLSDWKNSRDIDDYLERPANGWDFSAEGWLPAY 233
Cdd:PRK15318 163 VR-QNFGKWLLGGNIFYDYDFTRGHRRLGLGTEAWTDYLKFSGNYYHPLSDWKDSEDFDFYEERPARGWDIRAEGWLPAY 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 234 PQLGASIQFEKYYGKNVGLFGSDNLQENPYAVTGGISYTPVPLIKFSAQHKQGQSNTHDTTFGVEFNYRPGVSLAEQLSS 313
Cdd:PRK15318 242 PQLGGKLVYEQYYGDEVALFGTDNLQKDPHAVTLGLKYQPVPLVTVGTDYKAGTGDNNDLSVNATLNYQFGTPLKDQLDP 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 314 DNVAVMREVQNRRYDFVERNNNIVLEYKKKHALKISLP---ESVQGEGESIIPVTL-----------TIN---NASGGIK 376
Cdd:PRK15318 322 DNVKAAHSLMGSRHDFVDRNNFIVLEYKEKDPLDVTLWlkaDATNEHPECVIKDTPeaavglekckwTINaliNHHYKIV 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 377 SVQW---NDSAFTAAGGKIS------GNGTSWQITLPAYKS-------EGVNSWNVGATVQDNRGNVSNYAVMNISVTDS 440
Cdd:PRK15318 402 AASWqakNNAARTLVMPVVKanalteGNNNHWNLVLPAWQYasteeeqEALNTWRVRLALEDEKGNRQNSGVVEITVQQD 481
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 1518432237 441 ---*VSTADSSFTLDGDSSPTISADSQSTYPIVLSL---------KDSNGKAL 481
Cdd:PRK15318 482 rkiELIVNNIADVDRSNHSHEASAQADGVDGVVMDLditdsfgdnTDRNGNTL 534
|
|
| Ve_YrIlm_NTERM |
NF040981 |
YrIlm family inverse autotransporter adhesin N-terminal domain; |
36-408 |
2.50e-94 |
|
YrIlm family inverse autotransporter adhesin N-terminal domain;
Pssm-ID: 468911 [Multi-domain] Cd Length: 477 Bit Score: 310.48 E-value: 2.50e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 36 ANSFASSGNKDVTQIYASDEHanKVASFAASAGQSLANNNASSFAVNTLSTQATKE----VVDWLQQYGNARIKLNVDDS 111
Cdd:NF040981 96 ASPFSIDNDKNNTDIDIPLDH--ALAGHAQTGAAALASGDAAKSAAQLARSAANNEfnssAQQWLSQFGTAHVQLNVNDD 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 112 FSLKDSSFDFLYPWLDTQDYVLFSQTSLHRTDDRNQTNIGLGIRHFTPDnAMLGANVFYDYDLSRSHSRAGFGVEYWRDY 191
Cdd:NF040981 174 FHLDGSALDVLVPLYDNQSSILFTQLGARNKDSRNTLNIGAGVRAFLGD-WMYGMNTFFDNDVTGKNRRVGVGAEAWTDY 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 192 FRLGVNTYFGLSDWKNSRDIDDYLERPANGWDFSAEGWLPAYPQLGASIQFEKYYGKNVGLFGSDNLQENPYAVTGGISY 271
Cdd:NF040981 253 LKLSANSYFGTTDWHQSRDFADYNERPANGYDVRAEAYLPAYPQLGGKLMYEKYQGDEVALFGKDDRQKNPHAITAGINY 332
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 272 TPVPLIKFSAQHKQGQSNTHDTTFGVEFNYRPGVSLAEQLSSDNVAVMREVQNRRYDFVERNNNIVLEYKKKHALKISLP 351
Cdd:NF040981 333 TPIPLFTVGAEHRAGKGSHNDSRINLQFNYRLGESWQSHIDPSGVAASRTLAGSRYDLVERNNNIVLDYQKQDLIGLTLP 412
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1518432237 352 ESVQGEGESIIPVTLTINNASgGIKSVQWNDSAFTAAGGK-ISGNGTSWQITLPAYKS 408
Cdd:NF040981 413 EQVTGESSSSATVNAQVTSKY-GLERIEWDSAALMAAGGNlVQVSPQTVSVTLPPYQA 469
|
|
| PRK10177 |
PRK10177 |
YchO/YchP family invasin; |
17-451 |
1.39e-85 |
|
YchO/YchP family invasin;
Pssm-ID: 236661 Cd Length: 465 Bit Score: 285.88 E-value: 1.39e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 17 TWSVIVTQILSPVSLSLIPA--------------NSFASSGNK--DVTQIYASDEHANKVASFAASAGQSLANNN----- 75
Cdd:PRK10177 1 TMSRFVFRSFSLTLLLLLAGgtanaqsaftqqaqNPFDQNQDGlpDLGMAPENHDGEKHFAEMAKDFGEASMNDNgldtg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 76 --ASSFAVN----TLSTQATKEVVDWLQQYGNARIKLNVDDSFSLKDSSFDFLYPWLDTQDYVLFSQTSLHRTDDRNQTN 149
Cdd:PRK10177 81 eqAKQFAFGkvrdAVSQQVNQHVESWLSPWGNASVDLKVDNEGHFTGSRGSWFVPLQDNDRYLTWSQLGLTQQDDGLVSN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 150 IGLGIRhFTPDNAMLGANVFYDYDLSRSHSRAGFGVEYWRDYFRLGVNTYFGLSDWKNSRDIDDylERPANGWDFSAEGW 229
Cdd:PRK10177 161 VGVGQR-WAAGNWLLGYNTFYDNLLDENLQRAGFGAEAWGEYLRLSANYYQPFAAWHEQTATQE--QRMARGYDITAQMR 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 230 LPAYPQLGASIQFEKYYGKNVGLFGSDNLQENPYAVTGGISYTPVPLIKFSAQHKQGQSNTHDTTFGVEFNYRPGVSLAE 309
Cdd:PRK10177 238 LPFYQHLNTSVSVEQYFGDRVDLFNSGTGYHNPVALSLGLNYTPVPLVTVTAQHKQGESGESQNNLGLKLNYRFGVPLKK 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 310 QLSSDNVAVMREVQNRRYDFVERNNNIVLEYKKKHALKISL---PESVQGeGESiIPVTLTINNaSGGIKSVQW--NDSA 384
Cdd:PRK10177 318 QLSAGEVAESQSLRGSRYDNPQRNNLPVMEYRQRKTLTVFLatpPWDLQP-GET-VPLKLQIRS-RHGIRQLSWqgDTQA 394
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1518432237 385 FTAAGGKISGNGTSWQITLPAYKS-EGV-NSWNVGATVQDNRGN--VSNYAVMNISVTDS*VSTADSSFTL 451
Cdd:PRK10177 395 LSLTPGADANSAEGWTIIMPAWDNgEGAsNRWRLSVVVEDNQGQrvSSNEITLTLVEPFDALSNDELRWEP 465
|
|
| BID_1 |
smart00634 |
Bacterial Ig-like domain (group 1); |
667-754 |
3.57e-11 |
|
Bacterial Ig-like domain (group 1);
Pssm-ID: 214751 [Multi-domain] Cd Length: 92 Bit Score: 60.42 E-value: 3.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 667 FEASQNNALADGKQRNMVTVSLADRFGNVVPGYAVTLSLPAGITQVGGEHAVSTDENGNAIFALISSTPGSYVITAHAGS 746
Cdd:smart00634 5 LTADKDTAVANGSDAITLTATVTDANGNPVAGQEVTFTTPSGGALTLSKGTATTDANGIATVTLTSTTAGVYTVTASLEN 84
|
....*...
gi 1518432237 747 QMSTELTV 754
Cdd:smart00634 85 GSSSVKQV 92
|
|
| Big_1 |
pfam02369 |
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like ... |
676-742 |
8.96e-09 |
|
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial surface proteins such as intimins and invasins involved in pathogenicity.
Pssm-ID: 460541 [Multi-domain] Cd Length: 64 Bit Score: 52.94 E-value: 8.96e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1518432237 676 ADGKQRNMVTVSLADRFGNVVPGYAVTLSLPAGITQVGgehAVSTDENGNAIFALISSTPGSYVITA 742
Cdd:pfam02369 1 ADGVDTNTVTATVTDANGNPVPGATVTFSASGGTLSAS---SGTTDANGQATVTLTSTKAGTVTVTA 64
|
|
| BID_1 |
smart00634 |
Bacterial Ig-like domain (group 1); |
868-947 |
2.27e-07 |
|
Bacterial Ig-like domain (group 1);
Pssm-ID: 214751 [Multi-domain] Cd Length: 92 Bit Score: 49.63 E-value: 2.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 868 AELNMSVSKQEIVADGSENATVNIQLVDANNNAFTG-EVDLTITPSTGASLTSSNLQLDAHGQATTQFTASKSGQYTIQA 946
Cdd:smart00634 1 SVTTLTADKDTAVANGSDAITLTATVTDANGNPVAGqEVTFTTPSGGALTLSKGTATTDANGIATVTLTSTTAGVYTVTA 80
|
.
gi 1518432237 947 E 947
Cdd:smart00634 81 S 81
|
|
| BID_1 |
smart00634 |
Bacterial Ig-like domain (group 1); |
778-854 |
2.55e-07 |
|
Bacterial Ig-like domain (group 1);
Pssm-ID: 214751 [Multi-domain] Cd Length: 92 Bit Score: 49.63 E-value: 2.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 778 IPANGKDAAVLDVQLTNTNAS-VNGQKIQLITSSEGLSVPTN--IVTDSTGHVSVPLTTVKAGEYTVTARVTDGSHSVES 854
Cdd:smart00634 12 AVANGSDAITLTATVTDANGNpVAGQEVTFTTPSGGALTLSKgtATTDANGIATVTLTSTTAGVYTVTASLENGSSSVKQ 91
|
|
| Big_1 |
pfam02369 |
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like ... |
780-843 |
1.85e-05 |
|
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial surface proteins such as intimins and invasins involved in pathogenicity.
Pssm-ID: 460541 [Multi-domain] Cd Length: 64 Bit Score: 43.31 E-value: 1.85e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1518432237 780 ANGKDAAVLDVQLTNTN-ASVNGQKIQLiTSSEGLSVPTNIVTDSTGHVSVPLTTVKAGEYTVTA 843
Cdd:pfam02369 1 ADGVDTNTVTATVTDANgNPVPGATVTF-SASGGTLSASSGTTDANGQATVTLTSTKAGTVTVTA 64
|
|
| Invasin_D3 |
pfam09134 |
Invasin, domain 3; Members of this family adopt a structure consisting of an ... |
443-549 |
2.43e-05 |
|
Invasin, domain 3; Members of this family adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, arranged in a Greek-key topology. It forms part of the extracellular region of the protein, which can be expressed as a soluble protein (Inv497) that binds integrins and promotes subsequent uptake by cells when attached to bacteria.
Pssm-ID: 430426 [Multi-domain] Cd Length: 98 Bit Score: 44.23 E-value: 2.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 443 STADSSFTLDGDSsptISADSQSTYPIVLSLKDSNGKALTGLADDIEMSVeftadsnsarqretvTAPSLGAVEEISAGV 522
Cdd:pfam09134 1 DPAKSTIAADPAS---IVADGVSTSTLTVTLKDANGNPLTVGGATVTFST---------------TAGTLSAVTDNGDGT 62
|
90 100
....*....|....*....|....*..
gi 1518432237 523 YRSVL*AGSQAGTVRVTAKVQGKTFTL 549
Cdd:pfam09134 63 YTATLTSGTTAGTATVTFTVNGVAGAA 89
|
|
| Big_1 |
pfam02369 |
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like ... |
881-946 |
5.90e-05 |
|
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial surface proteins such as intimins and invasins involved in pathogenicity.
Pssm-ID: 460541 [Multi-domain] Cd Length: 64 Bit Score: 42.15 E-value: 5.90e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1518432237 881 ADGSENATVNIQLVDANNNAFTG-EVDLTitpSTGASLTSSNLQLDAHGQATTQFTASKSGQYTIQA 946
Cdd:pfam02369 1 ADGVDTNTVTATVTDANGNPVPGaTVTFS---ASGGTLSASSGTTDANGQATVTLTSTKAGTVTVTA 64
|
|
| ClfA |
COG4932 |
Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing ... |
432-1113 |
8.88e-05 |
|
Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443959 [Multi-domain] Cd Length: 689 Bit Score: 46.89 E-value: 8.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 432 VMNISVTDS*VSTADSSFTLDGDSSPTISADSQSTYPIVLSLKDSNGKALTGLADDIEMSVEFTADSNSARQRETVTAPS 511
Cdd:COG4932 6 GAGTGVGTVIVEGAGSGSLVAVTTGAVLGLALGSTGGTAGSAAAINSAPATGTATGTSAGATAVIVIAAGLTATPTETAS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 512 LGAVEEIS--AGVYRSVL*AGSQAGTVRVTAKVQGKTFTL*IKQTATTEPDSEVSAVLTAAPAEQVVGYNINLQLAVKDS 589
Cdd:COG4932 86 GLGGDATVttTANVAKVTNGAAANLTVNADGTASNAGTLAKGAETATGNLDGDAGDVTVTAAATDGVNDVDGNGASVTDS 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 590 QGNAITGDNTLSFYAlnqaEGVEFgTVTEKDGVYSATVTSKRAGKITI-GVKSDSHDFSGVKKEITFIEDRQQVTFSQFE 668
Cdd:COG4932 166 VTLKKVDDGDTGKPL----PGATF-TLYDSDGTLVKTVTTDADGKYTFtDLPPGTYTLTETKAPEGYVLDTKDPTGATIT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 669 AS------QNNALADGKQRNMVTVSL---ADRFGNVVPGYAVTLSLPAGITQVGGEhAVSTDENGNAIFALIssTPGSYV 739
Cdd:COG4932 241 VTvnaggtVTVTLKNTPKYTKGSVTVtktDADTGEPLAGATFTLTDADGNTVVTTT-VTVTDADGSYTFTDL--PPGTYT 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 740 IT---AHAGSQMSTE-LTVTFASNMTGaSLSLTPESSSLISNipangkDAAVLDVQLTNTNASVNGQKIQLiTSSEGLSV 815
Cdd:COG4932 318 VTetkAPAGYDLDGEaVKVTITAGQTT-TVTVTNGNNEVKTG------SVTLTKVDADDGEAPLAGAEFTL-TDADGTVV 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 816 PTnIVTDSTGHVSVplTTVKAGEYTVTARVTDGSHSVESGSVKLTFVPDvasaelnmsvSKQEIVADGSENATVNIQLVD 895
Cdd:COG4932 390 AT-ITTDADGTASF--KGLAPGTYTLTETKAPEGYTLDSTPITVTVTDG----------GTGAIDTITNERKKGSVQVTK 456
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 896 ANNNAFTGEVDLTITPSTGASLTSSNLQLDA--HGQATTQFTASKSGQYTIQA----EYVLDGKRITASQNIDAVTDVKG 969
Cdd:COG4932 457 VDAPLAGATFTLTDADGTVVTLTTDADLAGAtfEADGKVVTTTDASGKYTFKNlppgTYTDAGGSATVITDDTDGTVGDE 536
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 970 AVLEITSSASSAVVSDTNNLVFTLLLKSKSGEALSG--RALNVKTSGPSKYGALVVDKTTVTTDENGQATVSVHGRTVGS 1047
Cdd:COG4932 537 ATGTDPEVTVTGKSTTTTPDVALLTNLGTTEDALTSlaKTGDEVGKGLTLTTTTTVDTLDTNATEKTETVTVTAQLIGVK 616
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1518432237 1048 YKLTATLNELGSDVSAVKSFSLYADDANGVLTLTKDPGYETNDGSPVGIYARFVDHFGNPLSGTVE 1113
Cdd:COG4932 617 TTKLTDTTDPKGGTVEEATTTGGTANTGKTGTDLTDDTTVTSTTNTATSVEDTTDVDNKDAFTGGT 682
|
|
| BID_1 |
smart00634 |
Bacterial Ig-like domain (group 1); |
992-1064 |
2.82e-04 |
|
Bacterial Ig-like domain (group 1);
Pssm-ID: 214751 [Multi-domain] Cd Length: 92 Bit Score: 41.16 E-value: 2.82e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1518432237 992 TLLLKSKSGEALSGRALNVKTSGPskyGALVVDKTTVTTDENGQATVSVHGRTVGSYKLTATLNELGSDVSAV 1064
Cdd:smart00634 23 TATVTDANGNPVAGQEVTFTTPSG---GALTLSKGTATTDANGIATVTLTSTTAGVYTVTASLENGSSSVKQV 92
|
|
| Invasin_D3 |
pfam09134 |
Invasin, domain 3; Members of this family adopt a structure consisting of an ... |
665-759 |
2.86e-04 |
|
Invasin, domain 3; Members of this family adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, arranged in a Greek-key topology. It forms part of the extracellular region of the protein, which can be expressed as a soluble protein (Inv497) that binds integrins and promotes subsequent uptake by cells when attached to bacteria.
Pssm-ID: 430426 [Multi-domain] Cd Length: 98 Bit Score: 41.15 E-value: 2.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 665 SQFEASQNNALADGKQRNMVTVSLADRFGN--VVPGYAVTLSLPAGITQvggehAVSTDENGNAIFALISST-PGSYVIT 741
Cdd:pfam09134 5 STIAADPASIVADGVSTSTLTVTLKDANGNplTVGGATVTFSTTAGTLS-----AVTDNGDGTYTATLTSGTtAGTATVT 79
|
90
....*....|....*....
gi 1518432237 742 AH-AGSQMSTELTVTFASN 759
Cdd:pfam09134 80 FTvNGVAGAATATVTFVAG 98
|
|
| Invasin_D3 |
pfam09134 |
Invasin, domain 3; Members of this family adopt a structure consisting of an ... |
871-966 |
4.84e-04 |
|
Invasin, domain 3; Members of this family adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, arranged in a Greek-key topology. It forms part of the extracellular region of the protein, which can be expressed as a soluble protein (Inv497) that binds integrins and promotes subsequent uptake by cells when attached to bacteria.
Pssm-ID: 430426 [Multi-domain] Cd Length: 98 Bit Score: 40.38 E-value: 4.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 871 NMSVSKQEIVADGSENATVNIQLVDANNNAFT---GEVDLTITPSTGASLTSsnlqlDAHGQATTQFTAS-KSGQYTIQA 946
Cdd:pfam09134 6 TIAADPASIVADGVSTSTLTVTLKDANGNPLTvggATVTFSTTAGTLSAVTD-----NGDGTYTATLTSGtTAGTATVTF 80
|
90 100
....*....|....*....|
gi 1518432237 947 eyVLDGKRITASQNIDAVTD 966
Cdd:pfam09134 81 --TVNGVAGAATATVTFVAG 98
|
|
| YfaS |
COG2373 |
Uncharacterized conserved protein YfaS, alpha-2-macroglobulin family [General function ... |
788-1159 |
7.70e-04 |
|
Uncharacterized conserved protein YfaS, alpha-2-macroglobulin family [General function prediction only];
Pssm-ID: 441940 [Multi-domain] Cd Length: 1605 Bit Score: 43.92 E-value: 7.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 788 LDVQLTN--TNASVNGQKIQLItSSEGLSVPTnIVTDSTGHVSVPLTTVKAGEYTVTA-RVTDGSHsvesgsvkLTFVPD 864
Cdd:COG2373 278 LLVFVTSlsTGKPVAGAEVELY-DRNGQVLAT-ATTDADGLARFPAGDRGEGGRAPALlVARKGGD--------FAFLDL 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 865 VASAELnmSVSKQEIvaDGSENA------------------TVNIQLV--DANNNAFTG-EVDLTITPSTGASLTSSNLQ 923
Cdd:COG2373 348 DDGPAL--DLSDFDV--GGRAPPggldaflftdrgiyrpgeTVHLKALlrDADGKAPAGlPLTLELTDPDGKEVRRQTLT 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 924 LDAHGQATTQFTASKS---GQYTIQAEyvLDGKRITASQNIdAVTDVKGAVLEITSSASSAVVSDTNNLVFTLLLKSKSG 1000
Cdd:COG2373 424 LNEFGGYSFSFPLPEDaptGTWRLELY--VDPKPALGSKSF-RVEEFKPPRFKVDLTLDKEPLKPGDPVTVTVDARYLFG 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 1001 EALSGRALNVK---TSGPSKYGAL---------------VVDKTTVTTDENGQATVSVH------GRTVGSYKLTATLNE 1056
Cdd:COG2373 501 APAAGLKVEGEvtlRPARTAFPGYpgyrfgdpdeefepeELDLGEGTLDADGKASLSLPlpdapdAPGPLRATVEASVFE 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 1057 LGSD-VSAVKSFSLYADDAN-GVltltKDPGYETND-GSPVGIYARFVDHFGNPLSG---TVEF-------------SAG 1117
Cdd:COG2373 581 SGGRpVTRSATVPVHPADFYvGI----RLPLFDGDPeGAPATFEVVAVDPDGKPVAGkglKVELyreewryvwyksdDGG 656
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 1518432237 1118 SEDSPDSQRVKMEPATVTLHWTGNAASEFSTYESGYHWIKAK 1159
Cdd:COG2373 657 WRYESQEKEEPVAEGTLTTGADGPASLSLTPVEWGRYRLEVK 698
|
|
| CopC |
pfam04234 |
CopC domain; CopC is a bacterial blue copper protein that binds 1 atom of copper per protein ... |
772-857 |
8.12e-04 |
|
CopC domain; CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm.
Pssm-ID: 427806 Cd Length: 92 Bit Score: 39.59 E-value: 8.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 772 SSLISNIPANGkdaAVLD-----VQLT-NTNASVNGQKIQLITSSEGLSVPTNIVTDSTGHVSVPLTTVKAGEYTVTARV 845
Cdd:pfam04234 2 AALVSSTPADG---ATVAaapaeVTLTfSEPVEPAFSSVTVTDPDGVGAPDTVDGATDGATLTVPLPPLPAGTYTVAWRV 78
|
90
....*....|....
gi 1518432237 846 T--DGsHSVeSGSV 857
Cdd:pfam04234 79 VsaDG-HPV-SGSF 90
|
|
| FhaB |
COG3210 |
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ... |
365-1118 |
7.01e-03 |
|
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain] Cd Length: 1698 Bit Score: 40.91 E-value: 7.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 365 TLTINNASGGIKSVQWNDSAFTAAGGKISGNGTSWQITLPAYKSEGVNSWNVGATVQDNRGNVSNYAVMNISVTDS*VST 444
Cdd:COG3210 820 TITINTATTGLTGTGDTTSGAGGSNTTDTTTGTTSDGASGGGTAGANSGSLAATAASITVGSGGVATSTGTANAGTLTNL 899
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 445 ADSSFTLDGDSSPTISADSQSTYPIVLSLKDSNGKALTGLADDIEMSVEFTADSNSArqreTVTAPSLGAVEEISAGVYR 524
Cdd:COG3210 900 GTTTNAASGNGAVLATVTATGTGGGGLTGGNAAAGGTGAGNGTTALSGTQGNAGLSA----ASASDGAGDTGASSAAGSS 975
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 525 SVL*AGSQAGTVRVTAKVQGKTFTL*IKQTATTEPDSEVSAVLTAAPAEQVVGYNINLQLAVKDSQGNAITGDNTLSFYA 604
Cdd:COG3210 976 AVGTSANSAGSTGGVIAATGILVAGNSGTTASTTGGSGAIVAGGNGVTGTTGTASATGTGTAATAGGQNGVGVNASGISG 1055
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 605 LNQAEGVEFGTVTEKDGVYSATVTSKRAGKITIGVKSDSHDFSGVKKEITFIEDRQQVTFSQFEASQNNALADGKQRNMV 684
Cdd:COG3210 1056 GNAAALTASGTAGTTGGTAASNGGGGTAQASGAGTTHTLGGITNGGATGTSGGTTTSTGGVTASKVGGTTTVGATGTSTA 1135
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 685 TVSLADRFGNVVPGYAVTLSLPAGITQVGGEHAVSTDENGNAIFALISSTPGSYVITAHAGSQMSTELTVTFASNMTGAS 764
Cdd:COG3210 1136 STEAAGAGTLTGLVAVSAVAGGASSASAGDTTAVAAATTTTTGSAINGGADSAATEGTAGTDLKGGDSTGGSTTTIGTTN 1215
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 765 LSLTPESSSLISNIPANGKDAAVLDVQLTNTNASVNGQKIQLITSSEGLSVPTNIVTDSTGHVSVPLTTVKAGEYTVTAR 844
Cdd:COG3210 1216 VTTTTTLTASDTGNTTATGGSSAGQTGSFVAAGSASGTGDATTGATAGAVSNGATSTVAGNAGATATGSTVDIGSTSATS 1295
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 845 VTDGSHSVESGSVKLTFVPDVASAELNMSVSKQEIVADGSENATVNIQLVDANNNAFTGEVDLTITPSTGASLTSSNLQL 924
Cdd:COG3210 1296 AGGSLDTTGNTAGANGATVGTGIGGTTATGTAVAAVNSGGVNAGGGTINTTAANTGLNGGNGATDSAAGAGSGGAAGSLA 1375
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 925 DAHGQATTQFTASKSGQYTIQAEYVLDGKRITASQNIDAVTDVKGAVLEITSSASSAVVSDTNNLVFTLLLKSKSGEALS 1004
Cdd:COG3210 1376 ATAGAGTVLTGAGNNTGAEGTNAGRDGGVTTSGTGVGNNGGVSGTTVAGTTGSSATTGTGGTGNTTGTSVAGAGGGNADA 1455
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518432237 1005 GRALNVKTSGPSKYGALVVDKTTVTTDENGQATVSVHGRTVGSYKLTATLNELGSDVSAVKSFSLYADDANGVLTLTKDP 1084
Cdd:COG3210 1456 SAINTGNASSLGAGGSTAGNAVGGAVIGGTTTGGNGAGVAGATASNGGTSTGAGGTAGGTTAEVAKASLEGGEGTYGGSS 1535
|
730 740 750
....*....|....*....|....*....|....
gi 1518432237 1085 GYETNDGSPVGIYARFVDHFGNPLSGTVEFSAGS 1118
Cdd:COG3210 1536 VAEAGTGGGILGAVSGAGSEGGAAGGVTGSVGVG 1569
|
|
| |
