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Conserved domains on  [gi|1518450743|ref|WP_123311093|]
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damage-inducible protein J [Vibrio crassostreae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1778 super family cl01845
Protein of unknown function (DUF1778); This is a family of uncharacterized proteins. The ...
 2-52 2.21e-04

Protein of unknown function (DUF1778); This is a family of uncharacterized proteins. The structure of one of the hypothetical proteins in this family has been solved and it forms a helix structure which may form interactions with DNA.


The actual alignment was detected with superfamily member COG4453:

Pssm-ID: 470371  Cd Length: 89  Bit Score: 36.67  E-value: 2.21e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 1518450743  2 DTRIQFRVDEETKRLAQQMAESQGRTLSG-----ACRELTEQLAEQQRQTLSHDAW 52
Cdd:COG4453    6 TARINLRISPEQKALIDRAAALSGKTLTDfvleaALEAAEEVLLDQRLIRLSEEDF 61
 
Name Accession Description Interval E-value
COG4453 COG4453
Uncharacterized conserved protein, DUF1778 family [Function unknown];
2-52 2.21e-04

Uncharacterized conserved protein, DUF1778 family [Function unknown];


Pssm-ID: 443551  Cd Length: 89  Bit Score: 36.67  E-value: 2.21e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 1518450743  2 DTRIQFRVDEETKRLAQQMAESQGRTLSG-----ACRELTEQLAEQQRQTLSHDAW 52
Cdd:COG4453    6 TARINLRISPEQKALIDRAAALSGKTLTDfvleaALEAAEEVLLDQRLIRLSEEDF 61
 
Name Accession Description Interval E-value
COG4453 COG4453
Uncharacterized conserved protein, DUF1778 family [Function unknown];
2-52 2.21e-04

Uncharacterized conserved protein, DUF1778 family [Function unknown];


Pssm-ID: 443551  Cd Length: 89  Bit Score: 36.67  E-value: 2.21e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 1518450743  2 DTRIQFRVDEETKRLAQQMAESQGRTLSG-----ACRELTEQLAEQQRQTLSHDAW 52
Cdd:COG4453    6 TARINLRISPEQKALIDRAAALSGKTLTDfvleaALEAAEEVLLDQRLIRLSEEDF 61
RelB COG3077
Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module [Defense mechanisms];
1-44 3.02e-03

Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module [Defense mechanisms];


Pssm-ID: 442311  Cd Length: 82  Bit Score: 33.31  E-value: 3.02e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 1518450743  1 MDTRIQFRVDEETKRLAQQMAESQGRTLSGACRELTEQLAEQQR 44
Cdd:COG3077    3 ATANVNVRIDEELKEEAEAVLEELGLTPSDAIRMFLKQVVREGG 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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