|
Name |
Accession |
Description |
Interval |
E-value |
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
5-523 |
0e+00 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 787.43 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 5 EILGYVFAVIAGIAIGVVVGRFLLRNLLKQQEVAAQNKVKKILKDAENNAEILKKNKLLEAKEKFLQLKAEHEQEVNAKN 84
Cdd:PRK12704 2 MLLIIILIALVALVVGAVIGYFVRKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 85 NTINQRENTMKQKEQSVNQRMENFNKKEQELDKQKTNLEKQTDLAVKKQEEVEVLKNQHLKQLETIAGLSAEEAKEQLVE 164
Cdd:PRK12704 82 NELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 165 NLKQEARTQAMMQVKDIVDEAKLTASKEAKKVVIQTIQRTATEAAIENSVSIFHIESDEIKGRVIGREGRNIRALEAATG 244
Cdd:PRK12704 162 KVEEEARHEAAVLIKEIEEEAKEEADKKAKEILAQAIQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRALETLTG 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 245 IEIIVDDTPEAIILSGFDPVRREIARLALHRLVTDGRIHPARIEEIVAKTKKQIEDEIVEIGERTVIDLGIHGLHPELIR 324
Cdd:PRK12704 242 VDLIIDDTPEAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDEEIREEGEQAVFELGIHGLHPELIK 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 325 MVGRMRYRSSYGQNLLHHSREVANFCATMAAELGLNAKMAKRAGLLHDIGKVPDDNPELPHAILGMQLAEKYKEHPEICN 404
Cdd:PRK12704 322 LLGRLKYRTSYGQNVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIGKALDHEVEGSHVEIGAELAKKYKESPVVIN 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 405 AIGAHHDEIEMTSMISPIIQACDAISGARPGARREVVESYIKRLKDLEELALSYPGVEKTFAIQAGRELRVIVESERITD 484
Cdd:PRK12704 402 AIAAHHGDEEPTSIEAVLVAAADAISAARPGARRETLENYIKRLEKLEEIANSFEGVEKAYAIQAGREIRVIVKPDKVDD 481
|
490 500 510
....*....|....*....|....*....|....*....
gi 1525940986 485 AQAELLAADISTRIQTEMTYPGQIKVTVIRETRSVAFAK 523
Cdd:PRK12704 482 LQAVRLARDIAKKIEEELQYPGQIKVTVIRETRAVEYAK 520
|
|
| RNase_Y |
TIGR03319 |
ribonuclease Y; Members of this family are RNase Y, an endoribonuclease. The member from ... |
10-523 |
0e+00 |
|
ribonuclease Y; Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch. [Transcription, Degradation of RNA]
Pssm-ID: 188306 [Multi-domain] Cd Length: 514 Bit Score: 650.07 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 10 VFAVIAGIAIGVVVGRFLLRNLLKQQEVAAQNKVKKILKDAENNAEILKKNKLLEAKEKFLQLKAEHEQEVNAKNNTINQ 89
Cdd:TIGR03319 1 ILLALVALIVGLIIGYLLRKRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 90 RENTMKQKEQSVNQRMENFNKKEQELDKQKTNLEKQTDLAVKKQEEVEVLKNQHLKQLETIAGLSAEEAKEQLVENLKQE 169
Cdd:TIGR03319 81 LERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 170 ARTQAMMQVKDIVDEAKLTASKEAKKVVIQTIQRTATEAAIENSVSIFHIESDEIKGRVIGREGRNIRALEAATGIEIIV 249
Cdd:TIGR03319 161 ARHEAAKLIKEIEEEAKEEADKKAKEILATAIQRYAGDHVAETTVSVVNLPNDEMKGRIIGREGRNIRALETLTGVDLII 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 250 DDTPEAIILSGFDPVRREIARLALHRLVTDGRIHPARIEEIVAKTKKQIEDEIVEIGERTVIDLGIHGLHPELIRMVGRM 329
Cdd:TIGR03319 241 DDTPEAVILSGFDPVRREIARMALEKLIQDGRIHPARIEEMVEKATKEVDNAIREEGEQAAFDLGVHGLHPELIKLLGRL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 330 RYRSSYGQNLLHHSREVANFCATMAAELGLNAKMAKRAGLLHDIGKVPDDNPELPHAILGMQLAEKYKEHPEICNAIGAH 409
Cdd:TIGR03319 321 KFRTSYGQNVLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIGKAVDHEVEGSHVEIGAELAKKYKESPEVVNAIAAH 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 410 HDEIEMTSMISPIIQACDAISGARPGARREVVESYIKRLKDLEELALSYPGVEKTFAIQAGRELRVIVESERITDAQAEL 489
Cdd:TIGR03319 401 HGDVEPTSIEAVLVAAADALSAARPGARRESLENYIKRLEKLEEIANSFEGVEKSYAIQAGREIRVMVKPEKISDDQAVV 480
|
490 500 510
....*....|....*....|....*....|....
gi 1525940986 490 LAADISTRIQTEMTYPGQIKVTVIRETRSVAFAK 523
Cdd:TIGR03319 481 LARDIAKKIEEELEYPGQIKVTVIRETRAVEYAK 514
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
6-523 |
9.61e-164 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 474.20 E-value: 9.61e-164
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 6 ILGYVFAVIAGIAIGVVVGRFLLRNLLKQqevaaqnKVKKILKDAENNAEILKKNKLLEAKEKFLQLKAEHEQEVNAKNN 85
Cdd:PRK12705 5 ILLVILLLLIGLLLGVLVVLLKKRQRLAK-------EAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARRERE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 86 TINQRENTMKQKEQSVNQRMENFNKKEQELDKQKTNLEKQTdlavkkqEEVEVLKNQHLKQLETIAGLSAEEAKEQLVEN 165
Cdd:PRK12705 78 ELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARE-------LELEELEKQLDNELYRVAGLTPEQARKLLLKL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 166 LKQEARTQAMMQVKDIVDEAKLTASKEAKKVVIQTIQRTATEAAIENSVSIFHIESDEIKGRVIGREGRNIRALEAATGI 245
Cdd:PRK12705 151 LDAELEEEKAQRVKKIEEEADLEAERKAQNILAQAMQRIASETASDLSVSVVPIPSDAMKGRIIGREGRNIRAFEGLTGV 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 246 EIIVDDTPEAIILSGFDPVRREIARLALHRLVTDGRIHPARIEEIVAKTKKQIEDEIVEIGERTVIDLGIHGLHPELIRM 325
Cdd:PRK12705 231 DLIIDDTPEAVVISSFNPIRREIARLTLEKLLADGRIHPARIEEYVQKANEEFKQKIYEIGEEVLEELGIFDLKPGLVRL 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 326 VGRMRYRSSYGQNLLHHSREVANFCATMAAELGLNAKMAKRAGLLHDIGKVPDDNPELPHAILGMQLAEKYKEHPEICNA 405
Cdd:PRK12705 311 LGRLYFRTSYGQNVLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGKSIDRESDGNHVEIGAELARKFNEPDEVINA 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 406 IGAHHDEIEMTSMISPIIQACDAISGARPGARREVVESYIKRLKDLEELALSYPGVEKTFAIQAGRELRVIVESERITDA 485
Cdd:PRK12705 391 IASHHNKVNPETVYSVLVQIADALSAARPGARRESLDEYVQRLEELEQIAESFPGVEKAYAIQAGRELRVIVEPEKVSDA 470
|
490 500 510
....*....|....*....|....*....|....*...
gi 1525940986 486 QAELLAADISTRIQTEMTYPGQIKVTVIRETRSVAFAK 523
Cdd:PRK12705 471 QATLLARDIAKKIENDLTYPGPIKVTLIRETRAVEYAR 508
|
|
| PRK00106 |
PRK00106 |
ribonuclease Y; |
3-523 |
4.20e-146 |
|
ribonuclease Y;
Pssm-ID: 178867 [Multi-domain] Cd Length: 535 Bit Score: 430.06 E-value: 4.20e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 3 IVEILGYVFAVIAGIAIGVVVGRFLLRN--------LLKQQEVA------AQNKVKKILKDAENNAEILKKNKLLEAKEK 68
Cdd:PRK00106 1 MINIIILVVSALIGLVIGYVLISIKMKSakeaaeltLLNAEQEAvnlrgkAERDAEHIKKTAKRESKALKKELLLEAKEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 69 FLQLKAEHEQEVNAKNNTINQRENTMKQKEQSVNQRMENFNKKEQELDKQKTNLEKQTDLAVKKQEEVEVLKNQHLKQLE 148
Cdd:PRK00106 81 ARKYREEIEQEFKSERQELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 149 TIAGLSAEEAKEQLVENLKQEARTQAMMQVKDIVDEAKLTASKEAKKVVIQTIQRTATEAAIENSVSIFHIESDEIKGRV 228
Cdd:PRK00106 161 RVAALSQAEAREIILAETENKLTHEIATRIREAEREVKDRSDKMAKDLLAQAMQRLAGEYVTEQTITTVHLPDDNMKGRI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 229 IGREGRNIRALEAATGIEIIVDDTPEAIILSGFDPVRREIARLALHRLVTDGRIHPARIEEIVAKTKKQIEDEIVEIGER 308
Cdd:PRK00106 241 IGREGRNIRTLESLTGIDVIIDDTPEVVVLSGFDPIRREIARMTLESLIKDGRIHPARIEELVEKNRLEMDNRIREYGEA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 309 TVIDLGIHGLHPELIRMVGRMRYRSSYGQNLLHHSREVANFCATMAAELGLNAKMAKRAGLLHDIGKVPDDNPELPHAIL 388
Cdd:PRK00106 321 AAYEIGAPNLHPDLIKIMGRLQFRTSYGQNVLRHSVEVGKLAGILAGELGENVALARRAGFLHDMGKAIDREVEGSHVEI 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 389 GMQLAEKYKEHPEICNAIGAHHDEIEMTSMISPIIQACDAISGARPGARREVVESYIKRLKDLEELALSYPGVEKTFAIQ 468
Cdd:PRK00106 401 GMEFARKYKEHPVVVNTIASHHGDVEPESVIAVIVAAADALSSARPGARNESMENYIKRLRDLEEIANSFDGVQNSFALQ 480
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 1525940986 469 AGRELRVIVESERITDAQAELLAADISTRIQTEMTYPGQIKVTVIRETRSVAFAK 523
Cdd:PRK00106 481 AGREIRIMVQPEKISDDQVTILAHKVREKIENNLDYPGNIKVTVIRELRAVDYAK 535
|
|
| KH-I_RNaseY |
cd22431 |
type I K homology (KH) RNA-binding domain found in ribonuclease Y (RNase Y) and similar ... |
211-289 |
3.64e-43 |
|
type I K homology (KH) RNA-binding domain found in ribonuclease Y (RNase Y) and similar proteins; RNase Y is an endoribonuclease that initiates mRNA decay. It initiates the decay of all SAM-dependent riboswitches, such as yitJ riboswitch. RNase Y is involved in processing of the gapA operon mRNA and it cleaves between cggR and gapA. It is also the decay-initiating endonuclease for rpsO mRNA. It plays a role in degradation of type I toxin-antitoxin system bsrG/SR4 RNAs and also a minor role in degradation of type I toxin-antitoxin system bsrE/SR5 degradation.
Pssm-ID: 411859 [Multi-domain] Cd Length: 79 Bit Score: 147.73 E-value: 3.64e-43
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1525940986 211 ENSVSIFHIESDEIKGRVIGREGRNIRALEAATGIEIIVDDTPEAIILSGFDPVRREIARLALHRLVTDGRIHPARIEE 289
Cdd:cd22431 1 ERTVSTVNLPNDEMKGRIIGREGRNIRAFEAATGVDLIIDDTPEAVILSGFDPVRREVARRTLEKLVEDGRIHPARIEE 79
|
|
| RnaY |
COG1418 |
HD superfamily phosphodieaserase, includes HD domain of RNase Y [Translation, ribosomal ... |
320-517 |
4.59e-42 |
|
HD superfamily phosphodieaserase, includes HD domain of RNase Y [Translation, ribosomal structure and biogenesis, General function prediction only];
Pssm-ID: 441028 [Multi-domain] Cd Length: 191 Bit Score: 148.89 E-value: 4.59e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 320 PELIRMVgrMRYRSSYGQNLLHHSREVANFCATMAAELGLNAKMAKRAGLLHDIGKVPDDNPELPHAILGMQLAEKYK-- 397
Cdd:COG1418 2 PELIKLV--KYLRTSYGQHDLQHSLRVAKLAGLIAAEEGADVEVAKRAALLHDIGKAKDHEVEGSHAEIGAELARKYLes 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 398 ------EHPEICNAIGAHHDE--IEMTSMISPIIQACDAISGArpGArrevvesyikrlkdleelalsyPGVEKTFAI-- 467
Cdd:COG1418 80 lgfpeeEIEAVVHAIEAHSFSggIEPESLEAKIVQDADRLDAL--GA----------------------IGVARAFAIgg 135
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 468 QAGRELRVIVESE---------RITDAQAELLAADISTRIQTEMT-YPgqikVTVIRETR 517
Cdd:COG1418 136 QAGRELRDPEDTAinhfyekllKLKDLMATELARDIAKKREEFMEeFP----VTVIRETR 191
|
|
| RNase_Y_N |
pfam12072 |
RNase Y N-terminal region; |
9-207 |
1.11e-41 |
|
RNase Y N-terminal region;
Pssm-ID: 463456 [Multi-domain] Cd Length: 201 Bit Score: 148.11 E-value: 1.11e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 9 YVFAVIAGIAIGVVVGRFLLRNLLKQQEVAAQNKVKKILKDAENNAEILKKNKLLEAKEKFLQLKAEHEQEVNAKNNTIN 88
Cdd:pfam12072 2 IIILAIIALVVGFVVGYLVRKSIAEAKIGSAEELAKRIIEEAKKEAETKKKEALLEAKEEIHKLRAEAERELKERRNELQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 89 QRENTMKQKEQSVNQRMENFNKKEQELDKQKTNLEKQTDLAVKKQEEVEVLKNQHLKQLETIAGLSAEEAKEQLVENLKQ 168
Cdd:pfam12072 82 RQERRLLQKEETLDRKDESLEKKEESLEKKEKELEAQQQQLEEKEEELEELIEEQRQELERISGLTSEEAKEILLDEVEE 161
|
170 180 190
....*....|....*....|....*....|....*....
gi 1525940986 169 EARTQAMMQVKDIVDEAKLTASKEAKKVVIQTIQRTATE 207
Cdd:pfam12072 162 ELRHEAAVMIKEIEEEAKEEADKKAKEIIALAIQRCAAD 200
|
|
| Krr1 |
COG1094 |
rRNA processing protein Krr1/Pno1, contains KH domain [Translation, ribosomal structure and ... |
222-304 |
1.41e-21 |
|
rRNA processing protein Krr1/Pno1, contains KH domain [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440711 [Multi-domain] Cd Length: 177 Bit Score: 91.81 E-value: 1.41e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 222 DEIKGRVIGREGRNIRALEAATGIEIIVDDTPEAIIlSGFDPVrrEIARLALHRLVtDGRIHPArIEEIVAKTKKQIEDE 301
Cdd:COG1094 98 DRIKGRIIGREGRTRRIIEELTGVDISIYGKTVAII-GDFDQV--EIAREAIEMLI-DGRIHPT-VYEFLEKARRELKRR 172
|
...
gi 1525940986 302 IVE 304
Cdd:COG1094 173 RLE 175
|
|
| HDIG |
TIGR00277 |
HDIG domain; This domain is found in a few known nucleotidyltransferes and in a large number ... |
335-410 |
8.06e-19 |
|
HDIG domain; This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG. This model may annotate homologous domains in which one or more of the His residues is conserved but misaligned, and some probable false-positive hits.
Pssm-ID: 272994 [Multi-domain] Cd Length: 80 Bit Score: 80.84 E-value: 8.06e-19
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1525940986 335 YGQNLLHHSREVANFCATMAAELGLNAKMAKRAGLLHDIGKVPDDNP--ELPHAILGMQLAEKYKEHPEICNAIGAHH 410
Cdd:TIGR00277 1 YGQNVLQHSLEVAKLAEALARELGLDVELARRGALLHDIGKPITREGviFESHVVVGAEIARKYGEPLEVIDIIAEHH 78
|
|
| HDGYP |
COG2206 |
HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant) [Signal ... |
216-434 |
4.12e-11 |
|
HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant) [Signal transduction mechanisms];
Pssm-ID: 441808 [Multi-domain] Cd Length: 316 Bit Score: 64.22 E-value: 4.12e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 216 IFHIESDEIKGRVIGREGRNIRALEAATGIEIIVDDTPEAIILSGFDPVRREIARLALHRLVTDGRIHPARIEEIVAKTK 295
Cdd:COG2206 32 LLLLLLLLLALLALLLLLLLLLALLALLLALLALLLLLLLLLLLLSLLLAVALLLAELLLLLAALESLLAELFEELRLGL 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 296 KQIEDEIVEIGERTVIDLgihglhpeLIRMVGRMRYRSSYgqnLLHHSREVANFCATMAAELGLNAKMAKR---AGLLHD 372
Cdd:COG2206 112 LEELKKLVEELDELLPDA--------LLALLAALDAKDPY---TYGHSVRVAVLALALARELGLSEEELEDlglAALLHD 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 373 IGK--VPDD--NPELP-----------HAILGMQLAEKYKEHPEICNAIGAHH--------------DEIEMTSMISPII 423
Cdd:COG2206 181 IGKigIPDEilNKPGKltdeefeiikkHPEYGYEILKKLPGLSEVAEIVLQHHerldgsgyprglkgEEIPLLARILAVA 260
|
250
....*....|.
gi 1525940986 424 QACDAISGARP 434
Cdd:COG2206 261 DVYDALTSDRP 271
|
|
| HD |
pfam01966 |
HD domain; HD domains are metal dependent phosphohydrolases. |
339-430 |
1.06e-10 |
|
HD domain; HD domains are metal dependent phosphohydrolases.
Pssm-ID: 460398 [Multi-domain] Cd Length: 110 Bit Score: 58.79 E-value: 1.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 339 LLHHSREVANFCATMAAELG-LNAKMAKRAGLLHDIGKVP------DDNPELPHAILGMQLAEKYKEHP---EICNAIGA 408
Cdd:pfam01966 1 RLEHSLRVALLARELAEELGeLDRELLLLAALLHDIGKGPfgdekpEFEIFLGHAVVGAEILRELEKRLgleDVLKLILE 80
|
90 100
....*....|....*....|....*...
gi 1525940986 409 HHDEIEMTSMISP------IIQACDAIS 430
Cdd:pfam01966 81 HHESWEGAGYPEEislearIVKLADRLD 108
|
|
| HDc |
smart00471 |
Metal dependent phosphohydrolases with conserved 'HD' motif; Includes eukaryotic cyclic ... |
335-441 |
6.11e-10 |
|
Metal dependent phosphohydrolases with conserved 'HD' motif; Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Pssm-ID: 214679 [Multi-domain] Cd Length: 124 Bit Score: 56.92 E-value: 6.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 335 YGQNLLHHSREVANFCATMAAELGLNAKM-AKRAGLLHDIGKVPDDN-------PELPHAILGMQLAEKYKEHPEICN-- 404
Cdd:smart00471 1 SDYHVFEHSLRVAQLAAALAEELGLLDIElLLLAALLHDIGKPGTPDsflvktsVLEDHHFIGAEILLEEEEPRILEEil 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1525940986 405 --AIGAHHD-----EIEMTSMISPIIQACDAISGARPGARREVV 441
Cdd:smart00471 81 rtAILSHHErpdglRGEPITLEARIVKVADRLDALRADRRYRRV 124
|
|
| cas3_HD |
TIGR01596 |
CRISPR-associated endonuclease Cas3-HD; CRISPR/Cas systems are widespread, mobile systems for ... |
339-457 |
4.07e-07 |
|
CRISPR-associated endonuclease Cas3-HD; CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Pssm-ID: 273711 [Multi-domain] Cd Length: 176 Bit Score: 50.28 E-value: 4.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 339 LLHHSREVANFCATM-------AAELGLNAK-MAKRAGLLHDIGKV-------------PDDNPELPHAILG----MQLA 393
Cdd:TIGR01596 1 LKEHLLDVAAVAEALpalrprlAEKLGLELReLLKLAGLLHDLGKAspafqkklrkaeeRGDRGEVRHSTLSaallYDLL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1525940986 394 EKYKEHPE----ICNAIGAHHDEIEMTSMISPIIQACDAISGARPGARREVVESYIKRLKDLEELALS 457
Cdd:TIGR01596 81 EELGLEEElallLALAIAGHHGGLIDDDDLEELLELLERELEEALGELLEELEELLDEVLKALPLRLL 148
|
|
| HDOD |
pfam08668 |
HDOD domain; |
298-411 |
6.36e-07 |
|
HDOD domain;
Pssm-ID: 430141 [Multi-domain] Cd Length: 196 Bit Score: 49.92 E-value: 6.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 298 IEDEIVEIGERTVIDLgIHGLHpelirMVGRMRYRSSYGQNLLH---HSREVANFCATMAAELGL-NAKMAKRAGLLHDI 373
Cdd:pfam08668 57 ISQAVVLLGLRTVRNL-ALGIS-----VKRIFRGTPPLGFDLKGfweHSLACALAARLLARRLGLdDPEEAFLAGLLHDI 130
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1525940986 374 GKV------PDDNPEL---------------------PHAILGMQLAEKYKEHPEICNAIGAHHD 411
Cdd:pfam08668 131 GKLillsllPDKYEELlekaaeegislleaerellgtDHAEVGAALLERWNLPEELVEAIAYHHN 195
|
|
| HDc |
cd00077 |
Metal dependent phosphohydrolases with conserved 'HD' motif |
337-454 |
1.83e-06 |
|
Metal dependent phosphohydrolases with conserved 'HD' motif
Pssm-ID: 238032 [Multi-domain] Cd Length: 145 Bit Score: 47.72 E-value: 1.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 337 QNLLHHSREVANFCATMAAELGL---NAKMAKRAGLLHDIGKVPDDNPELP--------HAILGMQLA------EKYKEH 399
Cdd:cd00077 1 EHRFEHSLRVAQLARRLAEELGLseeDIELLRLAALLHDIGKPGTPDAITEeeselekdHAIVGAEILrellleEVIKLI 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1525940986 400 PEICNAIGAHHDEIEMTSMISP------------IIQACDAISGARPGARREVVEsyiKRLKDLEEL 454
Cdd:cd00077 81 DELILAVDASHHERLDGLGYPDglkgeeitlearIVKLADRLDALRRDSREKRRR---IAEEDLEEL 144
|
|
| Cas3''_I |
cd09641 |
CRISPR/Cas system-associated protein Cas3''; CRISPR (Clustered Regularly Interspaced Short ... |
333-410 |
2.65e-06 |
|
CRISPR/Cas system-associated protein Cas3''; CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; HD-like nuclease, specifically digesting double-stranded oligonucleotides and preferably cleaving at G:C pairs; signature gene for Type I
Pssm-ID: 193608 [Multi-domain] Cd Length: 200 Bit Score: 48.04 E-value: 2.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 333 SSYGQNLLHHSREVANFCATMA--------AELGLNAKMAKRAGLLHDIGK----------------VPDDNPELPHAIL 388
Cdd:cd09641 3 SGPWQPLLEHLLDVAAWDAELAeefarklgLELGLSRELLALAGLLHDLGKatpafqkylrggkealREGKRKEVRHSLL 82
|
90 100 110
....*....|....*....|....*....|
gi 1525940986 389 G----MQLAEKYKEHPEICN----AIGAHH 410
Cdd:cd09641 83 GalllYELLKELGLDEELALllayAIAGHH 112
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
28-237 |
4.68e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 4.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 28 LRNLLKQQEVAAQNKVKKILKDAEN--NAEILKKNKllEAKEKFLQLKAEHEQEVNAKNNTINQRENT------MKQKEQ 99
Cdd:PTZ00121 1594 IEEVMKLYEEEKKMKAEEAKKAEEAkiKAEELKKAE--EEKKKVEQLKKKEAEEKKKAEELKKAEEENkikaaeEAKKAE 1671
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 100 SVNQRMENFNKKEQELDKQKTNLEKQTDLA-----VKKQEEVEVLKNQHLKQLETIAGLSAEEAKEQLVENLKQEARTQA 174
Cdd:PTZ00121 1672 EDKKKAEEAKKAEEDEKKAAEALKKEAEEAkkaeeLKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKK 1751
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1525940986 175 MMQVKDIVDEAKLTASKEAKKVviqtiqRTATEAAIENSVSifhiESDEIKGRVIGREGRNIR 237
Cdd:PTZ00121 1752 DEEEKKKIAHLKKEEEKKAEEI------RKEKEAVIEEELD----EEDEKRRMEVDKKIKDIF 1804
|
|
| YqeK |
COG1713 |
Diadenosine tetraphosphatase YqeK or a related HD superfamily phosphohydrolase [Signal ... |
340-410 |
7.01e-06 |
|
Diadenosine tetraphosphatase YqeK or a related HD superfamily phosphohydrolase [Signal transduction mechanisms, General function prediction only];
Pssm-ID: 441319 [Multi-domain] Cd Length: 184 Bit Score: 46.65 E-value: 7.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 340 LHHSREVANFCATMAAELGLNAKMAKRAGLLHDIGK-VPDD-------------------NPELPHAILGMQLA-EKYKE 398
Cdd:COG1713 19 YEHTLGVAETAVELAERYGVDVEKAELAGLLHDYAKeLPPEellelakeygldldeleeyNPELLHGPVGAYLAkEEFGI 98
|
90
....*....|...
gi 1525940986 399 H-PEICNAIgAHH 410
Cdd:COG1713 99 TdEEILNAI-RYH 110
|
|
| nadD |
PRK07152 |
nicotinate-nucleotide adenylyltransferase; |
342-453 |
8.81e-06 |
|
nicotinate-nucleotide adenylyltransferase;
Pssm-ID: 235947 [Multi-domain] Cd Length: 342 Bit Score: 48.02 E-value: 8.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 342 HSREVANFCATMAAELGLNAKMAKRAGLLHDIGK---------------VPDDNPELP--HAILGMQLAEK-YK-EHPEI 402
Cdd:PRK07152 200 HCLRVAQLAAELAKKNNLDPKKAYYAGLYHDITKewdeekhrkflkkylKDVKNLPWYvlHQYVGALWLKHvYGiDDEEI 279
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1525940986 403 CNAIGAHHDEIEMTSMISPIIQACDAISgarPGARREVVESYIK-RLKDLEE 453
Cdd:PRK07152 280 LNAIRNHTSLAEEMSTLDKIVYVADKIE---PGRKYIGIQKLRKlAFKDLDE 328
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
28-246 |
2.46e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.24 E-value: 2.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 28 LRNLLKQQEVAAQ-NKVKKILKDAENNAEILKKNKLLEAKEKFLQLKAEHEQEVNAKNNTINQRENTMKQKEQSV---NQ 103
Cdd:COG1196 202 LEPLERQAEKAERyRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELeelEL 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 104 RMENFNKKEQELDKQKTNLEKQTDLAVKKQEEVEV----LKNQHLKQLETIAGLSAEEAKEQLVENLKQEARTQAMMQVK 179
Cdd:COG1196 282 ELEEAQAEEYELLAELARLEQDIARLEERRRELEErleeLEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELA 361
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1525940986 180 DiVDEAKLTASKEAKKVVIQTIQRTATEAAIENSVSIFHIESDEIKGRVIGREGRNIRALEAATGIE 246
Cdd:COG1196 362 E-AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
|
|
| HDOD |
COG1639 |
HD-like signal output (HDOD) domain, no enzymatic activity [Signal transduction mechanisms]; |
337-448 |
2.77e-05 |
|
HD-like signal output (HDOD) domain, no enzymatic activity [Signal transduction mechanisms];
Pssm-ID: 441246 [Multi-domain] Cd Length: 244 Bit Score: 45.73 E-value: 2.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 337 QNLLHHSREVANFCATMAAELG-LNAKMAKRAGLLHDIGKV------PDDNPELP---------------------HAIL 388
Cdd:COG1639 103 RRFWRHSLAVAAAARALARRLGlLDPEEAFLAGLLHDIGKLvllslfPEEYAELLalaeadglslaeaerevlgtdHAEL 182
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1525940986 389 GMQLAEKYKEHPEICNAIGAHHD--EIEMTSMISPIIQACDAISGARPGARREVVESYIKRL 448
Cdd:COG1639 183 GAALARKWGLPEELVEAIRYHHDpeAAGEHRRLAALVHLANRLARALGEEDPALPEAALALL 244
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
32-212 |
1.36e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 32 LKQQEVAAQNKVKKIlkdaenNAEILKKNKLLEAKEKFLQLKAEHEQEVNAKNNTINQRENTMKQKEQSVNQRMENFNKK 111
Cdd:TIGR02168 244 LQEELKEAEEELEEL------TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQ 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 112 EQELDKQKTNLEKQTDlavKKQEEVEVLKNQHLKQLETIAGLSAE-EAKEQLVENLKQ--EARTQAMMQVKDIVDEAKLT 188
Cdd:TIGR02168 318 LEELEAQLEELESKLD---ELAEELAELEEKLEELKEELESLEAElEELEAELEELESrlEELEEQLETLRSKVAQLELQ 394
|
170 180
....*....|....*....|....
gi 1525940986 189 ASKEAKKVVIQTIQRTATEAAIEN 212
Cdd:TIGR02168 395 IASLNNEIERLEARLERLEDRRER 418
|
|
| polC |
PRK00448 |
DNA polymerase III PolC; Validated |
27-150 |
1.36e-04 |
|
DNA polymerase III PolC; Validated
Pssm-ID: 234767 [Multi-domain] Cd Length: 1437 Bit Score: 44.83 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 27 LLRNLLKQQEVAAQNKVKKILKDAENNAEILKKN---KLLEAKEKF----LQLKAEHEQEVNAKNNTINQREntmKQKEQ 99
Cdd:PRK00448 109 LFKSLLKKQKVEVEGNKLIIKVNNEIERDHLKKKhlpKLIKQYEKFgfgiLKIDFEIDDSKEELEKFEAQKE---EEDEK 185
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1525940986 100 SVNQRMENFNKKEQELDKQKTNLEKQTDLAVKKQEevevLKNQHLKQLETI 150
Cdd:PRK00448 186 LAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKK----IDKEEITPMKEI 232
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
30-212 |
3.41e-04 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 42.87 E-value: 3.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 30 NLLKQQEVAAQNKVKKILKDAENNAEILKKNKLLEaKEKFLQLKAEHEQEVNAKNNTINQR---ENTMKQKEQSVNQRME 106
Cdd:PRK09510 65 NRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAE-QERLKQLEKERLAAQEQKKQAEEAAkqaALKQKQAEEAAAKAAA 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 107 NFNKKEQELDKQKTNLEKQTDLAVKKQEEVEVLKNQHL---KQLETIAGLSAE---------EAKEQLVENLKQEARTQA 174
Cdd:PRK09510 144 AAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAeakKKAEAEAAAKAAaeakkkaeaEAKKKAAAEAKKKAAAEA 223
|
170 180 190
....*....|....*....|....*....|....*...
gi 1525940986 175 MMQVKDIVDEAKLTASKEAKKVVIQTIQRTATEAAIEN 212
Cdd:PRK09510 224 KAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAAEVDD 261
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
40-173 |
7.81e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 7.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 40 QNKVKKILKDAENnaEILKKNKLLEAKEKFLQ--------LKAEHEQEVN--------AKNNTINQRENTMKQKEQSVNQ 103
Cdd:TIGR04523 262 QNKIKKQLSEKQK--ELEQNNKKIKELEKQLNqlkseisdLNNQKEQDWNkelkselkNQEKKLEEIQNQISQNNKIISQ 339
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1525940986 104 RMENFNKKEQEL-DKQKTNLEKQTDLAvKKQEEVEVLKNQHLKQLETIAGLSAE----EAKEQLVENLKQEARTQ 173
Cdd:TIGR04523 340 LNEQISQLKKELtNSESENSEKQRELE-EKQNEIEKLKKENQSYKQEIKNLESQindlESKIQNQEKLNQQKDEQ 413
|
|
| PRK13763 |
PRK13763 |
putative RNA-processing protein; Provisional |
224-283 |
9.67e-04 |
|
putative RNA-processing protein; Provisional
Pssm-ID: 237494 [Multi-domain] Cd Length: 180 Bit Score: 40.24 E-value: 9.67e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 224 IKGRVIGREGRNIRALEAATGIEIIVDDTPEAIIlsGfDPVRREIARLALHRLVtDGRIH 283
Cdd:PRK13763 105 IKGRIIGEGGKTRRIIEELTGVDISVYGKTVAII--G-DPEQVEIAREAIEMLI-EGAPH 160
|
|
| arCOG04150 |
TIGR03665 |
arCOG04150 universal archaeal KH domain protein; This family of proteins is universal among ... |
223-283 |
1.17e-03 |
|
arCOG04150 universal archaeal KH domain protein; This family of proteins is universal among the 41 archaeal genomes analyzed, and is not observed outside of the archaea. The proteins contain a single KH domain (pfam00013) which is likely to confer the ability to bind RNA.
Pssm-ID: 274711 [Multi-domain] Cd Length: 172 Bit Score: 39.86 E-value: 1.17e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1525940986 223 EIKGRVIGREGRNIRALEAATGIEIIVDDTPEAIIlsGfDPVRREIARLALHRLVtDGRIH 283
Cdd:TIGR03665 98 RIKGRIIGEGGKTRRIIEELTGVSISVYGKTVGII--G-DPEQVQIAREAIEMLI-EGAPH 154
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
31-195 |
1.34e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.67 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 31 LLKQQEVAAQNKVKKI---LKDAENNAEILKKNKLLEAKEK--FLQLKAEHEQEVNAKNNTINQRENTMKQKEQSvnqRM 105
Cdd:PTZ00121 1551 LKKAEELKKAEEKKKAeeaKKAEEDKNMALRKAEEAKKAEEarIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEEL---KK 1627
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 106 ENFNKKEQELDKQKTNLEKQTDLAVKKQEEVEVLKNQHLKQLETIAGLSAEEAKEQLVENLKQEARTQAMMQVKDIVDEA 185
Cdd:PTZ00121 1628 AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEEL 1707
|
170
....*....|
gi 1525940986 186 KLTASKEAKK 195
Cdd:PTZ00121 1708 KKKEAEEKKK 1717
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
33-195 |
1.91e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 33 KQQEVAAQNKVKKILKDAENNAEILKKN----------KLLEAKEKFLQLKAEHEQEVNAKNNTINQRENTMKQKEQSVN 102
Cdd:PTZ00121 1310 KAEEAKKADEAKKKAEEAKKKADAAKKKaeeakkaaeaAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE 1389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 103 QRMENFNKKEQELDKQKTNLEKQTDLAVKKQEEV-----EVLKNQHLKQLETIAGlSAEEAKEQLVENLKQEARTQAMMQ 177
Cdd:PTZ00121 1390 KKKADEAKKKAEEDKKKADELKKAAAAKKKADEAkkkaeEKKKADEAKKKAEEAK-KADEAKKKAEEAKKAEEAKKKAEE 1468
|
170
....*....|....*...
gi 1525940986 178 VKDiVDEAKLTAsKEAKK 195
Cdd:PTZ00121 1469 AKK-ADEAKKKA-EEAKK 1484
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
30-213 |
1.92e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.19 E-value: 1.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 30 NLLKQQevaaQNKVKKILKDAENNAEILKKNKLLEAKEKFLQLKAeheqEVNAKNNTINQREntMKQKEQSVNQ-----R 104
Cdd:PRK10929 140 SQLPQQ----QTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQA----ESAALKALVDELE--LAQLSANNRQelarlR 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 105 MENFNKKEQELDKQKTNLEKQtdLAVKKQEEVEvlknQHLKQLETIAGLSAEEAK---EQLVEN--LKQEARTQAmmQVK 179
Cdd:PRK10929 210 SELAKKRSQQLDAYLQALRNQ--LNSQRQREAE----RALESTELLAEQSGDLPKsivAQFKINreLSQALNQQA--QRM 281
|
170 180 190
....*....|....*....|....*....|....*
gi 1525940986 180 DIVDEAKLTASKeakkvviQTIQ-RTATEAAIENS 213
Cdd:PRK10929 282 DLIASQQRQAAS-------QTLQvRQALNTLREQS 309
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
26-215 |
2.30e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 40.83 E-value: 2.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 26 FLLRNLLKQQEVAaqnKVKKILKDAENNAEILKKNKLLEAKEKFLQLKAEHEQEVNAKNNTINQRENTMKQKEQSvNQRM 105
Cdd:COG5022 919 LIENLEFKTELIA---RLKKLLNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKA-NSEL 994
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 106 ENFNKKEQELDKQKTNLEKQTDLAVKKQEEVEVLKNqHLKQLETIAGLSAEEAKEQLVENLKQEARTQAMMQVKDI---- 181
Cdd:COG5022 995 KNFKKELAELSKQYGALQESTKQLKELPVEVAELQS-ASKIISSESTELSILKPLQKLKGLLLLENNQLQARYKALklrr 1073
|
170 180 190
....*....|....*....|....*....|....*..
gi 1525940986 182 ---VDEAKLTASKEAKKVVIQTIQRTATEAAIENSVS 215
Cdd:COG5022 1074 ensLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVK 1110
|
|
| FAM76 |
pfam16046 |
FAM76 protein; This family of proteins is functionally uncharacterized. This family of ... |
58-126 |
2.85e-03 |
|
FAM76 protein; This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 233 and 341 amino acids in length.
Pssm-ID: 464993 [Multi-domain] Cd Length: 303 Bit Score: 39.77 E-value: 2.85e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1525940986 58 KKNKLLEAKEKFL-QLKAEH-EQEvnaknntiNQRENTMKQKEQSVNQRMENFNKKEQELDKQKTNLEKQT 126
Cdd:pfam16046 240 QKDQQLLEKDKQItELKAKHfTKE--------RELRNKMKTMEKEHEDKVEQLQIKIRSLLKEVATLSKSK 302
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
31-208 |
3.03e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.51 E-value: 3.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 31 LLKQQEVAAQNKVKKILKDAENNAEILKKNKLLEAKEKFLQLKAEHEQEVN----AKNNTINQRENTMKQKEQSVNQRME 106
Cdd:PTZ00121 1295 AKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAeaakAEAEAAADEAEAAEEKAEAAEKKKE 1374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 107 NFNKKEQELdKQKTNLEKQTDLAVKKQEEVEVlKNQHLKQLETiAGLSAEEAKEQLVENLK-QEARTQAMMQVKdiVDEA 185
Cdd:PTZ00121 1375 EAKKKADAA-KKKAEEKKKADEAKKKAEEDKK-KADELKKAAA-AKKKADEAKKKAEEKKKaDEAKKKAEEAKK--ADEA 1449
|
170 180
....*....|....*....|...
gi 1525940986 186 KLTAsKEAKKVviQTIQRTATEA 208
Cdd:PTZ00121 1450 KKKA-EEAKKA--EEAKKKAEEA 1469
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
32-269 |
3.19e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 3.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 32 LKQQEVAAQNKVKKILKDAE-NNAEILKKNKLLEAKEKFLQLK----AEHEQEVNAKNNTINQRENTMKQKEQSV----- 101
Cdd:COG3883 28 LQAELEAAQAELDALQAELEeLNEEYNELQAELEALQAEIDKLqaeiAEAEAEIEERREELGERARALYRSGGSVsyldv 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 102 ------------------------NQRMENFNKKEQELDKQKTNLEKQTDLAVKKQEEVEVLKNQHLKQLETIAGLSAE- 156
Cdd:COG3883 108 llgsesfsdfldrlsalskiadadADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQl 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 157 EAKEQLVENLKQEARTQAMMQVKDIVDEAKLTASKEAKKVVIQTIQRTATEAAIENSVSIFHIESDEIKGRVIGREGRNI 236
Cdd:COG3883 188 SAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGAAGAAAGSAGAAGA 267
|
250 260 270
....*....|....*....|....*....|...
gi 1525940986 237 RALEAATGIEIIVDDTPEAIILSGFDPVRREIA 269
Cdd:COG3883 268 AAGAAGAGAAAASAAGGGAGGAGGGGGGGGAAS 300
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
32-222 |
3.72e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.12 E-value: 3.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 32 LKQQEVAAQNKVKKILKDAENN---AEILKKnKLLEAKEKFLQLKAEHEQEvnaknntiNQRENTMKQKEQSvNQRMENF 108
Cdd:PTZ00121 1638 LKKKEAEEKKKAEELKKAEEENkikAAEEAK-KAEEDKKKAEEAKKAEEDE--------KKAAEALKKEAEE-AKKAEEL 1707
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 109 NKKEQEldkqktnlEKQTDLAVKKQEEVEVLKNQHLKQletiaglSAEEAKEQLVENLKQEARTQAMMQVKDIVDEAKLT 188
Cdd:PTZ00121 1708 KKKEAE--------EKKKAEELKKAEEENKIKAEEAKK-------EAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEE 1772
|
170 180 190
....*....|....*....|....*....|....
gi 1525940986 189 ASKEAKKVVIQTIQRTATEAAIENSVSIFHIESD 222
Cdd:PTZ00121 1773 IRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDN 1806
|
|
| PgpH |
COG1480 |
Cyclic di-AMP-specific phosphodiesterase PgpH, HD superfamily [Signal transduction mechanisms]; ... |
341-410 |
3.76e-03 |
|
Cyclic di-AMP-specific phosphodiesterase PgpH, HD superfamily [Signal transduction mechanisms];
Pssm-ID: 441089 [Multi-domain] Cd Length: 692 Bit Score: 39.82 E-value: 3.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 341 HHSREVANFCATMAAELGLNAKMAKRAGLLHDIGKVPD-----------DNP--ELP----------HAILGMQLAEKYK 397
Cdd:COG1480 480 HHSLMVANLAEAAAEAIGANPLLARVGAYYHDIGKMKRplyfienqmggENPhdKLSpslsaliiisHVKDGVELARKYK 559
|
90
....*....|...
gi 1525940986 398 EHPEICNAIGAHH 410
Cdd:COG1480 560 LPKEIIDFIRQHH 572
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
33-195 |
3.92e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.12 E-value: 3.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 33 KQQEVAAQNKVKKILKDAENNAEILKKNKLLEAKEKFLQLKAEHEQEVNA----KNNTINQRENTMKQKEQSVNQRMENF 108
Cdd:PTZ00121 1573 EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAeelkKAEEEKKKVEQLKKKEAEEKKKAEEL 1652
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 109 NKKEQEL------DKQKTNLEKQTDLAVKKQEEVEVLKNQHLKQLETIAGlSAEEAKEQLVENLKQEARTQAMMQVKDI- 181
Cdd:PTZ00121 1653 KKAEEENkikaaeEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK-KAEELKKKEAEEKKKAEELKKAEEENKIk 1731
|
170
....*....|....
gi 1525940986 182 VDEAKLTASKEAKK 195
Cdd:PTZ00121 1732 AEEAKKEAEEDKKK 1745
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
43-220 |
3.94e-03 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 39.99 E-value: 3.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 43 VKKILKDAENNAEilKKNKLLEAKEKFLQLKAEHEQEVNAKNNTINQRENTMKQKEQSVNQRMENFNKKEQELDKQKTNL 122
Cdd:pfam05262 183 VEALREDNEKGVN--FRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 123 EKQTDLA---VKKQEEVEVLKNQHLKQLET-IAGLSAEEAKEQLVENLKQEARTQAMMQvkdivdEAKLTASKEAKKVVI 198
Cdd:pfam05262 261 PKPADTSspkEDKQVAENQKREIEKAQIEIkKNDEEALKAKDHKAFDLKQESKASEKEA------EDKELEAQKKREPVA 334
|
170 180 190
....*....|....*....|....*....|..
gi 1525940986 199 QTIQRT----------ATEAAIENSVSIFHIE 220
Cdd:pfam05262 335 EDLQKTkpqveaqptsLNEDAIDSSNPVYGLK 366
|
|
| PRK13735 |
PRK13735 |
conjugal transfer mating pair stabilization protein TraG; Provisional |
75-169 |
5.67e-03 |
|
conjugal transfer mating pair stabilization protein TraG; Provisional
Pssm-ID: 184287 [Multi-domain] Cd Length: 942 Bit Score: 39.34 E-value: 5.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 75 EHEQEVNAKNNTINQRENTMKQKEQSVNQRMENFNKKEQELDKQKTNLEKQTDLAVKKQEEVevlKNQHLKQLETIAGLS 154
Cdd:PRK13735 848 QRTQDSGIRNDVKHQVDNMVTEYEGNIGDTQNSIRGEENTVKGQYSELQNHHKTEALSQNNK---YNEEKSAQERMPGAD 924
|
90
....*....|....*
gi 1525940986 155 AEEAKEQLVENLKQE 169
Cdd:PRK13735 925 SPEELMKRAKEYQDK 939
|
|
| KH-I_AKAP1 |
cd22395 |
type I K homology (KH) RNA-binding domain found in mitochondrial A-kinase anchor protein 1 ... |
216-254 |
8.06e-03 |
|
type I K homology (KH) RNA-binding domain found in mitochondrial A-kinase anchor protein 1 (AKAP1) and similar proteins; AKAP1, also called A-kinase anchor protein 149 kDa, or AKAP 149, or dual specificity A-kinase-anchoring protein 1, or D-AKAP-1, or protein kinase A-anchoring protein 1 (PRKA1), or spermatid A-kinase anchor protein 84, or S-AKAP84, is a novel developmentally regulated A kinase anchor protein of male germ cells. It binds to type I and II regulatory subunits of protein kinase A and anchors them to the cytoplasmic face of the mitochondrial outer membrane.
Pssm-ID: 411823 [Multi-domain] Cd Length: 68 Bit Score: 35.19 E-value: 8.06e-03
10 20 30
....*....|....*....|....*....|....*....
gi 1525940986 216 IFHIESDEIkGRVIGREGRNIRALEAATGIEIIVDDTPE 254
Cdd:cd22395 3 EFEVPSELV-GRLIGKQGRNVKQLKQKSGAKIYIKPHPY 40
|
|
| GvpP |
COG4980 |
Gas vesicle protein YhaH [General function prediction only]; |
8-106 |
8.28e-03 |
|
Gas vesicle protein YhaH [General function prediction only];
Pssm-ID: 444004 [Multi-domain] Cd Length: 106 Bit Score: 36.10 E-value: 8.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1525940986 8 GYVFAVIAGIAIGVVVGRFL-------LRNLLKQQEVAAQNKVKKILKDAENNAEILKKnkllEAKEKFLQLKAEHEQEV 80
Cdd:COG4980 5 NFLLGLLVGAAVGAAAGLLFapksgkeTRKKLKDKADDLKDKAEDLKDELKEKASELSE----EAKEKLDELIEEIKEKI 80
|
90 100
....*....|....*....|....*.
gi 1525940986 81 NAKNNTINQRENTMKQKEQSVNQRME 106
Cdd:COG4980 81 EELKEEVEPKIEELKEEAEKLQKEVE 106
|
|
| |
