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Conserved domains on  [gi|1526217359|ref|WP_124690768|]
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MULTISPECIES: DUF1328 domain-containing protein [unclassified Pigmentiphaga]

Protein Classification

DUF1328 domain-containing protein( domain architecture ID 10009345)

uncharacterized DUF1328 domain-containing protein similar to Escherichia coli membrane protein YtjA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YtjA COG5487
Uncharacterized membrane protein YtjA, UPF0391 family [Function unknown];
1-49 5.11e-08

Uncharacterized membrane protein YtjA, UPF0391 family [Function unknown];


:

Pssm-ID: 444238  Cd Length: 54  Bit Score: 44.03  E-value: 5.11e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 1526217359  1 MLRWATIFFVIPLLVAVAGFSDFAASAANIAVVLFLVSLGAFLATFFIR 49
Cdd:COG5487    1 MLRWALIFLVIALIAGVLGFGGIAGAAAGIAKILFFIFLVLFVVSLVAG 49
 
Name Accession Description Interval E-value
YtjA COG5487
Uncharacterized membrane protein YtjA, UPF0391 family [Function unknown];
1-49 5.11e-08

Uncharacterized membrane protein YtjA, UPF0391 family [Function unknown];


Pssm-ID: 444238  Cd Length: 54  Bit Score: 44.03  E-value: 5.11e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 1526217359  1 MLRWATIFFVIPLLVAVAGFSDFAASAANIAVVLFLVSLGAFLATFFIR 49
Cdd:COG5487    1 MLRWALIFLVIALIAGVLGFGGIAGAAAGIAKILFFIFLVLFVVSLVAG 49
PRK13682 PRK13682
hypothetical protein; Provisional
 1-49 5.87e-04

hypothetical protein; Provisional


Pssm-ID: 184239  Cd Length: 51  Bit Score: 33.69  E-value: 5.87e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 1526217359  1 MLRWATIFFVIPLLVAVAGFSDFAASAANIAVVLFLVSLGAFLATFFIR 49
Cdd:PRK13682   1 MLKWAIIFLVIALIAAVLGFGGIAGAAAGIAKILFFIFLVLFVVSLLLG 49
 
Name Accession Description Interval E-value
YtjA COG5487
Uncharacterized membrane protein YtjA, UPF0391 family [Function unknown];
1-49 5.11e-08

Uncharacterized membrane protein YtjA, UPF0391 family [Function unknown];


Pssm-ID: 444238  Cd Length: 54  Bit Score: 44.03  E-value: 5.11e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 1526217359  1 MLRWATIFFVIPLLVAVAGFSDFAASAANIAVVLFLVSLGAFLATFFIR 49
Cdd:COG5487    1 MLRWALIFLVIALIAGVLGFGGIAGAAAGIAKILFFIFLVLFVVSLVAG 49
PRK13682 PRK13682
hypothetical protein; Provisional
 1-49 5.87e-04

hypothetical protein; Provisional


Pssm-ID: 184239  Cd Length: 51  Bit Score: 33.69  E-value: 5.87e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 1526217359  1 MLRWATIFFVIPLLVAVAGFSDFAASAANIAVVLFLVSLGAFLATFFIR 49
Cdd:PRK13682   1 MLKWAIIFLVIALIAAVLGFGGIAGAAAGIAKILFFIFLVLFVVSLLLG 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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