|
Name |
Accession |
Description |
Interval |
E-value |
| BetA |
COG2303 |
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General ... |
1-540 |
0e+00 |
|
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]; Choline dehydrogenase or related flavoprotein is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway
Pssm-ID: 441878 [Multi-domain] Cd Length: 531 Bit Score: 695.81 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 1 MTYDYIIVGAGSAGCILANRLSESGRHSVLLLEAGEQDASFWFKVPVGFTKTYYNRRYNWMYYSEPEAQLDGRSLYCPRG 80
Cdd:COG2303 3 EEYDYVIVGAGSAGCVLANRLSEDAGLRVLLLEAGGRDDDPLIRMPAGYAKLLGNPRYDWRYETEPQPGLNGRRLYWPRG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 81 KVVGGSGSINAMVYVRGQRSDYDDWAAAGNAGWAYDDVLPYFRKLETHAAGATDpqHHGTSGPIHITSMKADvHPIVHEF 160
Cdd:COG2303 83 KVLGGSSSINGMIYVRGQPEDFDLWAQLGNQGWGYDDVLPYFKRAEDNERGADA--YHGRSGPLPVSDPPLP-NPLSDAF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 161 LKGCEQLNLPRTDDFNGARFEGAGIYDLNTKHGERCSSSFAYLRPALGRPNLTLRAGVLVRRVTFDGTRAAGVIVAGERG 240
Cdd:COG2303 160 IEAAEELGIPRADDFNGGACEGCGFCQVTCRNGARWSAARAYLPPALKRPNLTVRTGALVTRILFDGGRATGVEYRDDGE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 241 DETLSAAREVILAAGAVDTPKLLQLSGVGDPALLARHRVPLVHALPAVGRNLQDHLCVSFYFKANRPTlndEMGTLLGKV 320
Cdd:COG2303 240 EHTVRAAREVILAAGAINSPQLLLLSGIGPASHLREHGIPVVHDLPGVGRNLQDHLEVSVVFRFKEPV---TLNKSLRKA 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 321 KIGLRYLLTKRGPLAMSVNQAGGFFRGTADTHEPNLQLYFNPLSYRIPKSDRAsikPEPYSGFLIAFNPCRPTSRGTIEI 400
Cdd:COG2303 317 RIGLQYLLTRSGPLTSNVAEAGGFFRSDPGLERPDLQFHFLPLGLTPRWGKKA---LHDGHGFTAHVEQLRPESRGRVTL 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 401 ASNRAEDAAKIRINALTTQKDLDEAVQGSKVIRALMQAPALKAMTVEEISPGPQVDSDEAMRqYFREQSGSIYHLCGSCA 480
Cdd:COG2303 394 DSADPLGAPLIRPNYLSDENDRRVLVAGVRLAREIAAQPALAPYRGEEILPGPDVQSDEELA-FIRARAYTIYHPVGTCR 472
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 481 MGPDaATSVVDASLRVHGLKALRIVDASVFPNITSGNINAPTMMVAEKGADLILADALRG 540
Cdd:COG2303 473 MGTD-PDSVVDPRLRVHGVENLRVVDASVMPTITSGNTNAPTIMLAEKAADMILGDYLKN 531
|
|
| PRK02106 |
PRK02106 |
choline dehydrogenase; Validated |
1-534 |
0e+00 |
|
choline dehydrogenase; Validated
Pssm-ID: 235000 [Multi-domain] Cd Length: 560 Bit Score: 585.26 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 1 MTYDYIIVGAGSAGCILANRLSESGRHSVLLLEAGEQD--ASFWFKVPVGFTKTYYNRRYNWMYYSEPEAQLDGRSLYCP 78
Cdd:PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDyrWDFFIQMPAALAFPLQGKRYNWAYETEPEPHMNNRRMECP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 79 RGKVVGGSGSINAMVYVRGQRSDYDDWAAAGNAGW-AYDDVLPYFRKLETHAAGATDpqHHGTSGPIHITSMKADVHPIV 157
Cdd:PRK02106 84 RGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGwSYADCLPYFKKAETRDGGEDD--YRGGDGPLSVTRGKPGTNPLF 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 158 HEFLKGCEQLNLPRTDDFNGARFEGAGIYDLNTKHGERCSSSFAYLRPALGRPNLTLRAGVLVRRVTFDGTRAAGVIVAG 237
Cdd:PRK02106 162 QAFVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEGKRAVGVEYER 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 238 ERGDETLSAAREVILAAGAVDTPKLLQLSGVGDPALLARHRVPLVHALPAVGRNLQDHLCVSFYFKANRP-TLNDEMGtL 316
Cdd:PRK02106 242 GGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVYIQYECKQPvSLYPALK-W 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 317 LGKVKIGLRYLLTKRGPLAMSVNQAGGFFRGTADTHEPNLQLYFNPLSYRipksDRASIKPEPYsGFLIAFNPCRPTSRG 396
Cdd:PRK02106 321 WNKPKIGAEWLFTGTGLGASNHFEAGGFIRSRAGVDWPNIQYHFLPVAIR----YDGSNAVKGH-GFQAHVGPMRSPSRG 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 397 TIEIASNRAEDAAKIRINALTTQKDLDEAVQGSKVIRALMQAPALKAMTVEEISPGPQVDSDEAMRQYFREQSGSIYHLC 476
Cdd:PRK02106 396 SVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREISPGADVQTDEEIDAFVREHAETAYHPS 475
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361661 477 GSCAMGPDaATSVVDASLRVHGLKALRIVDASVFPNITSGNINAPTMMVAEKGADLIL 534
Cdd:PRK02106 476 CTCKMGTD-PMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIR 532
|
|
| betA |
TIGR01810 |
choline dehydrogenase; Choline dehydrogenase catalyzes the conversion of exogenously supplied ... |
4-534 |
1.22e-151 |
|
choline dehydrogenase; Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli, Staphylococcus xylosus, and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. [Cellular processes, Adaptations to atypical conditions]
Pssm-ID: 273814 [Multi-domain] Cd Length: 532 Bit Score: 445.48 E-value: 1.22e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 4 DYIIVGAGSAGCILANRLSESGRHSVLLLEAGEQDASFWF--KVPVGFTKTYYNRRYNWMYYSEPEAQLDGRSLYCPRGK 81
Cdd:TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLliQMPAALAYPAGNKRYNWIYETEPEPHMNNRRVGHARGK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 82 VVGGSGSINAMVYVRGQRSDYDDWAAAGNAGW-AYDDVLPYFRKLETHAAGATDpqHHGTSGPIHITSMKADvHPIVHEF 160
Cdd:TIGR01810 81 VLGGSSSINGMIYQRGNPMDYEKWAKPEGMESwDYADCLPYYKRLETTFGGEKP--YRGHDGPIKVRRGPAD-NPLFQAF 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 161 LKGCEQLNLPRTDDFNGARFEGAGIYDLNTKHGERCSSSFAYLRPALGRPNLTLRAGVLVRRVTFDGTRAAGVIVagERG 240
Cdd:TIGR01810 158 IEAGVEAGYNKTPDVNGFRQEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEF--KKG 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 241 D--ETLSAAREVILAAGAVDTPKLLQLSGVGDPALLARHRVPLVHALPAVGRNLQDHLCVSFYFKANRPTLNDEMGTLLG 318
Cdd:TIGR01810 236 GrkEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEVYVQHACKQPVSLYPSLNWLK 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 319 KVKIGLRYLLTKRGPLAMSVNQAGGFFRGTADTHEPNLQLYFNPLSYRIPKSDRASikpepYSGFLIAFNPCRPTSRGTI 398
Cdd:TIGR01810 316 QPFIGAQWLFGRKGAGASNHFEGGGFVRSNDDVDYPNIQYHFLPVAIRYDGTKAPK-----AHGFQVHVGPMYSNSRGHV 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 399 EIASNRAEDAAKIRINALTTQKDLDEAVQGSKVIRALMQAPALKAMTVEEISPGPQVDSDEAMRQYFREQSGSIYHLCGS 478
Cdd:TIGR01810 391 KIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGEISPGPEVQTDEEIDEFVRRHGETALHPCGT 470
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 1528361661 479 CAMGP-DAATSVVDASLRVHGLKALRIVDASVFPNITSGNINAPTMMVAEKGADLIL 534
Cdd:TIGR01810 471 CKMGPaSDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADIIR 527
|
|
| GMC_oxred_N |
pfam00732 |
GMC oxidoreductase; This family of proteins bind FAD as a cofactor. |
71-297 |
6.85e-48 |
|
GMC oxidoreductase; This family of proteins bind FAD as a cofactor.
Pssm-ID: 366272 [Multi-domain] Cd Length: 218 Bit Score: 165.92 E-value: 6.85e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 71 DGRSLYCPRGKVVGGSGSINAMVYVRGQRSDYDD-WAAAGNAGWAYDDVLPYFRKLEthaagatdpqhhgtsGPIHITSM 149
Cdd:pfam00732 15 NGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEwASEFGLEGWGYDDYLPYMDKVE---------------GPLGVTTK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 150 KADVHPIVHEFLKGCEQLNLP---RTDDFNGARFEGAGIYDlnTKHGERCSSSFAYLRPALGRpNLTLRAGVLVRRVTFD 226
Cdd:pfam00732 80 GIEESPLNQALLKAAEELGYPveaVPRNSNGCHYCGFCGLG--CPTGAKQSTARTWLRPALER-NLRILTGAKAEKIIIL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1528361661 227 GT--RAAGV-IVAGERGDETLS-AAREVILAAGAVDTPKLLQLSGVGDpallARHrvplvhalpAVGRNLQDHLC 297
Cdd:pfam00732 157 GRggRAVGVeARDGGGGIKRLItAAKEVVVAAGALNTPPLLLRSGLGK----NPH---------PVGKNLQLHPV 218
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| BetA |
COG2303 |
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General ... |
1-540 |
0e+00 |
|
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]; Choline dehydrogenase or related flavoprotein is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway
Pssm-ID: 441878 [Multi-domain] Cd Length: 531 Bit Score: 695.81 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 1 MTYDYIIVGAGSAGCILANRLSESGRHSVLLLEAGEQDASFWFKVPVGFTKTYYNRRYNWMYYSEPEAQLDGRSLYCPRG 80
Cdd:COG2303 3 EEYDYVIVGAGSAGCVLANRLSEDAGLRVLLLEAGGRDDDPLIRMPAGYAKLLGNPRYDWRYETEPQPGLNGRRLYWPRG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 81 KVVGGSGSINAMVYVRGQRSDYDDWAAAGNAGWAYDDVLPYFRKLETHAAGATDpqHHGTSGPIHITSMKADvHPIVHEF 160
Cdd:COG2303 83 KVLGGSSSINGMIYVRGQPEDFDLWAQLGNQGWGYDDVLPYFKRAEDNERGADA--YHGRSGPLPVSDPPLP-NPLSDAF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 161 LKGCEQLNLPRTDDFNGARFEGAGIYDLNTKHGERCSSSFAYLRPALGRPNLTLRAGVLVRRVTFDGTRAAGVIVAGERG 240
Cdd:COG2303 160 IEAAEELGIPRADDFNGGACEGCGFCQVTCRNGARWSAARAYLPPALKRPNLTVRTGALVTRILFDGGRATGVEYRDDGE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 241 DETLSAAREVILAAGAVDTPKLLQLSGVGDPALLARHRVPLVHALPAVGRNLQDHLCVSFYFKANRPTlndEMGTLLGKV 320
Cdd:COG2303 240 EHTVRAAREVILAAGAINSPQLLLLSGIGPASHLREHGIPVVHDLPGVGRNLQDHLEVSVVFRFKEPV---TLNKSLRKA 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 321 KIGLRYLLTKRGPLAMSVNQAGGFFRGTADTHEPNLQLYFNPLSYRIPKSDRAsikPEPYSGFLIAFNPCRPTSRGTIEI 400
Cdd:COG2303 317 RIGLQYLLTRSGPLTSNVAEAGGFFRSDPGLERPDLQFHFLPLGLTPRWGKKA---LHDGHGFTAHVEQLRPESRGRVTL 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 401 ASNRAEDAAKIRINALTTQKDLDEAVQGSKVIRALMQAPALKAMTVEEISPGPQVDSDEAMRqYFREQSGSIYHLCGSCA 480
Cdd:COG2303 394 DSADPLGAPLIRPNYLSDENDRRVLVAGVRLAREIAAQPALAPYRGEEILPGPDVQSDEELA-FIRARAYTIYHPVGTCR 472
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 481 MGPDaATSVVDASLRVHGLKALRIVDASVFPNITSGNINAPTMMVAEKGADLILADALRG 540
Cdd:COG2303 473 MGTD-PDSVVDPRLRVHGVENLRVVDASVMPTITSGNTNAPTIMLAEKAADMILGDYLKN 531
|
|
| PRK02106 |
PRK02106 |
choline dehydrogenase; Validated |
1-534 |
0e+00 |
|
choline dehydrogenase; Validated
Pssm-ID: 235000 [Multi-domain] Cd Length: 560 Bit Score: 585.26 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 1 MTYDYIIVGAGSAGCILANRLSESGRHSVLLLEAGEQD--ASFWFKVPVGFTKTYYNRRYNWMYYSEPEAQLDGRSLYCP 78
Cdd:PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDyrWDFFIQMPAALAFPLQGKRYNWAYETEPEPHMNNRRMECP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 79 RGKVVGGSGSINAMVYVRGQRSDYDDWAAAGNAGW-AYDDVLPYFRKLETHAAGATDpqHHGTSGPIHITSMKADVHPIV 157
Cdd:PRK02106 84 RGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGwSYADCLPYFKKAETRDGGEDD--YRGGDGPLSVTRGKPGTNPLF 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 158 HEFLKGCEQLNLPRTDDFNGARFEGAGIYDLNTKHGERCSSSFAYLRPALGRPNLTLRAGVLVRRVTFDGTRAAGVIVAG 237
Cdd:PRK02106 162 QAFVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEGKRAVGVEYER 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 238 ERGDETLSAAREVILAAGAVDTPKLLQLSGVGDPALLARHRVPLVHALPAVGRNLQDHLCVSFYFKANRP-TLNDEMGtL 316
Cdd:PRK02106 242 GGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVYIQYECKQPvSLYPALK-W 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 317 LGKVKIGLRYLLTKRGPLAMSVNQAGGFFRGTADTHEPNLQLYFNPLSYRipksDRASIKPEPYsGFLIAFNPCRPTSRG 396
Cdd:PRK02106 321 WNKPKIGAEWLFTGTGLGASNHFEAGGFIRSRAGVDWPNIQYHFLPVAIR----YDGSNAVKGH-GFQAHVGPMRSPSRG 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 397 TIEIASNRAEDAAKIRINALTTQKDLDEAVQGSKVIRALMQAPALKAMTVEEISPGPQVDSDEAMRQYFREQSGSIYHLC 476
Cdd:PRK02106 396 SVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREISPGADVQTDEEIDAFVREHAETAYHPS 475
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361661 477 GSCAMGPDaATSVVDASLRVHGLKALRIVDASVFPNITSGNINAPTMMVAEKGADLIL 534
Cdd:PRK02106 476 CTCKMGTD-PMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIR 532
|
|
| betA |
TIGR01810 |
choline dehydrogenase; Choline dehydrogenase catalyzes the conversion of exogenously supplied ... |
4-534 |
1.22e-151 |
|
choline dehydrogenase; Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli, Staphylococcus xylosus, and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. [Cellular processes, Adaptations to atypical conditions]
Pssm-ID: 273814 [Multi-domain] Cd Length: 532 Bit Score: 445.48 E-value: 1.22e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 4 DYIIVGAGSAGCILANRLSESGRHSVLLLEAGEQDASFWF--KVPVGFTKTYYNRRYNWMYYSEPEAQLDGRSLYCPRGK 81
Cdd:TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLliQMPAALAYPAGNKRYNWIYETEPEPHMNNRRVGHARGK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 82 VVGGSGSINAMVYVRGQRSDYDDWAAAGNAGW-AYDDVLPYFRKLETHAAGATDpqHHGTSGPIHITSMKADvHPIVHEF 160
Cdd:TIGR01810 81 VLGGSSSINGMIYQRGNPMDYEKWAKPEGMESwDYADCLPYYKRLETTFGGEKP--YRGHDGPIKVRRGPAD-NPLFQAF 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 161 LKGCEQLNLPRTDDFNGARFEGAGIYDLNTKHGERCSSSFAYLRPALGRPNLTLRAGVLVRRVTFDGTRAAGVIVagERG 240
Cdd:TIGR01810 158 IEAGVEAGYNKTPDVNGFRQEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEF--KKG 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 241 D--ETLSAAREVILAAGAVDTPKLLQLSGVGDPALLARHRVPLVHALPAVGRNLQDHLCVSFYFKANRPTLNDEMGTLLG 318
Cdd:TIGR01810 236 GrkEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEVYVQHACKQPVSLYPSLNWLK 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 319 KVKIGLRYLLTKRGPLAMSVNQAGGFFRGTADTHEPNLQLYFNPLSYRIPKSDRASikpepYSGFLIAFNPCRPTSRGTI 398
Cdd:TIGR01810 316 QPFIGAQWLFGRKGAGASNHFEGGGFVRSNDDVDYPNIQYHFLPVAIRYDGTKAPK-----AHGFQVHVGPMYSNSRGHV 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 399 EIASNRAEDAAKIRINALTTQKDLDEAVQGSKVIRALMQAPALKAMTVEEISPGPQVDSDEAMRQYFREQSGSIYHLCGS 478
Cdd:TIGR01810 391 KIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGEISPGPEVQTDEEIDEFVRRHGETALHPCGT 470
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 1528361661 479 CAMGP-DAATSVVDASLRVHGLKALRIVDASVFPNITSGNINAPTMMVAEKGADLIL 534
Cdd:TIGR01810 471 CKMGPaSDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADIIR 527
|
|
| Rv0697 |
TIGR03970 |
dehydrogenase, Rv0697 family; This model describes a set of dehydrogenases belonging to the ... |
4-534 |
2.80e-83 |
|
dehydrogenase, Rv0697 family; This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function.
Pssm-ID: 274888 [Multi-domain] Cd Length: 487 Bit Score: 267.84 E-value: 2.80e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 4 DYIIVGAGSAGCILANRLSESGRHSVLLLEAGE--QDASFW-------FKVPVGFTKTYYnRRYNWMYYSEPeaqldGRS 74
Cdd:TIGR03970 2 DVLIVGAGSAGSVLAARLSEDPSCTVTVLEAGPgyRDPSRLpaqltdgLRLPIGPASPVV-WRYGVELTDGP-----RRA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 75 LYCPRGKVVGGSGSINAMVYVRGQRSDYDdwaAAGNAGWAYDDVLPYFRKLETHAAGATdpQHHGTSGPIHITSmKADVH 154
Cdd:TIGR03970 76 SQIVRGRVLGGSGAVNGGYFCRALPADFD---AWPIPGWSWDDVLPHFRAIETDLDFDG--PLHGTAGPIPVRR-TAELD 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 155 PIVHEFLKGCEQLNLPRTDDFNGARFE---GAGIYDLNTKHGERCSSSFAYLRPALGRPNLTLRAGVLVRRVTFDGTRAA 231
Cdd:TIGR03970 150 GISAAFVAAALGAGFGWIADLNGSGPGlpgGVGAVPLNVDGGRRVSTAVAYLLPALKRPNLTVEADTRVVRILFSGTRAV 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 232 GVIVAGERGDETLSAAReVILAAGAVDTPKLLQLSGVGDPALLARHRVPLVHALPaVGRNLQDHlcvsfyfkanrPtlnd 311
Cdd:TIGR03970 230 GVEVLGDGGPRTLRADR-VVLCAGAVESAHLLLLSGIGPAEQLRAAGIAVVLDLP-VGSDFVDH-----------P---- 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 312 emgtllgkvKIGLRYLLTKrgplAMSVNQAGGFFRGTADTHEPNLQLYFNPLSYRIPKSDRasikPEPYSGFLIAfnpcR 391
Cdd:TIGR03970 293 ---------EWVLPYRWRP----THDRPPTSPVLETVLNTADIEIRPYTAGFTALVPGSPR----DDPHLGVALM----R 351
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 392 PTSRGTIEIASNRAEDAAKIRINALTTQKDLDEAVQGSKVIRALMQAPALKAMtveeISPGPQVDSDEAMRQYFreqsGS 471
Cdd:TIGR03970 352 PHSRGRIRLASADPADPPRIEHRYDSSAADRAALRAGAALAHELLGSPELGPL----LEPAVREGEASWVLARL----AT 423
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1528361661 472 IYHLCGSCAMG-PDAATSVVDASLRVHGLKALRIVDASVFPNITSGNINAPTMMVAEKGADLIL 534
Cdd:TIGR03970 424 SQHLCGSCRMGgRDDPGAVVDARCRVRGVEGLWVVDGSILPVIPSRGPHATAVMVAERAAEFLG 487
|
|
| GMC_oxred_N |
pfam00732 |
GMC oxidoreductase; This family of proteins bind FAD as a cofactor. |
71-297 |
6.85e-48 |
|
GMC oxidoreductase; This family of proteins bind FAD as a cofactor.
Pssm-ID: 366272 [Multi-domain] Cd Length: 218 Bit Score: 165.92 E-value: 6.85e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 71 DGRSLYCPRGKVVGGSGSINAMVYVRGQRSDYDD-WAAAGNAGWAYDDVLPYFRKLEthaagatdpqhhgtsGPIHITSM 149
Cdd:pfam00732 15 NGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEwASEFGLEGWGYDDYLPYMDKVE---------------GPLGVTTK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 150 KADVHPIVHEFLKGCEQLNLP---RTDDFNGARFEGAGIYDlnTKHGERCSSSFAYLRPALGRpNLTLRAGVLVRRVTFD 226
Cdd:pfam00732 80 GIEESPLNQALLKAAEELGYPveaVPRNSNGCHYCGFCGLG--CPTGAKQSTARTWLRPALER-NLRILTGAKAEKIIIL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1528361661 227 GT--RAAGV-IVAGERGDETLS-AAREVILAAGAVDTPKLLQLSGVGDpallARHrvplvhalpAVGRNLQDHLC 297
Cdd:pfam00732 157 GRggRAVGVeARDGGGGIKRLItAAKEVVVAAGALNTPPLLLRSGLGK----NPH---------PVGKNLQLHPV 218
|
|
| GMC_oxred_C |
pfam05199 |
GMC oxidoreductase; This domain found associated with pfam00732. |
392-528 |
6.66e-40 |
|
GMC oxidoreductase; This domain found associated with pfam00732.
Pssm-ID: 398739 [Multi-domain] Cd Length: 143 Bit Score: 141.77 E-value: 6.66e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 392 PTSRGTIEIASNRAEDAAKIRINALTTQKDLDEAVQGSKVIRALMQAPALKAMT-----VEEISPGPQVDSDEAMRQYFR 466
Cdd:pfam05199 1 PRSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAAGLVLGVeltpgPVPEVSDAAVTSDDELLAYIR 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1528361661 467 EQSGSIYHLCGSCAMGPDAATSVVDASLRVHGLKALRIVDASVFPNITSGNINAPTMMVAEK 528
Cdd:pfam05199 81 AAASTSYHPMGTCRMGADPDDAVVDPDLRVHGVDNLRVVDASVFPSSPSGNPTLTIYALAER 142
|
|
| PLN02785 |
PLN02785 |
Protein HOTHEAD |
2-545 |
2.93e-28 |
|
Protein HOTHEAD
Pssm-ID: 215420 [Multi-domain] Cd Length: 587 Bit Score: 119.14 E-value: 2.93e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 2 TYDYIIVGAGSAGCILANRLSEsgRHSVLLLEAGeqdASFWFKVPVGFTKTYYNRRYNWMYYSEPEAQLDGRSLYCPRGK 81
Cdd:PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERG---GVPFGNANVSFLENFHIGLADTSPTSASQAFISTDGVINARAR 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 82 VVGGSGSINAMVYVRG-----QRSDYDdwaaagnaGWAYDDVLPYFRKLETHAAGATDPQHHGTSGpihitSMKADVHPi 156
Cdd:PLN02785 130 VLGGGTCINAGFYSRAstrfiQKAGWD--------AKLVNESYPWVERQIVHWPKVAPWQAALRDS-----LLEVGVSP- 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 157 vheflkgceqLNLPRTDDFNGARFeGAGIYDlntKHGERCSSsfAYLRPALGRPNLTLRAGVLVRRVTFDGT----RAAG 232
Cdd:PLN02785 196 ----------FNGFTYDHVYGTKV-GGTIFD---EFGRRHTA--AELLAAGNPNKLRVLLHATVQKIVFDTSgkrpRATG 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 233 VIVAGERGDET---LSAAR--EVILAAGAVDTPKLLQLSGVGDPALLARHRVPLVHALPAVGRNLQDHLCVSFYFKANRP 307
Cdd:PLN02785 260 VIFKDENGNQHqafLSNNKgsEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNSIFVPSKAP 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 308 TLNdemgTLLGKVKIglryllTKRGplaMSVNQAGGFFRGTADTH-------EPNLQLYFNPLSYRIPKSDRASIK---- 376
Cdd:PLN02785 340 VEQ----SLIQTVGI------TKMG---VYIEASSGFGQSPDSIHchhgimsAEIGQLSTIPPKQRTPEAIQAYIHrkkn 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 377 --PEPYSGFLIAFNPCRPTSRGTIEIASNRAEDAAKIRINALTTQKDLDEAVQGSKVIRALMQA--------------PA 440
Cdd:PLN02785 407 lpHEAFNGGFILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTnhftnftqcdkqtmEK 486
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361661 441 LKAMTVE-EISPGPQVDSD-EAMRQYFREQSGSIYHLCGSCAMGpdaatSVVDASLRVHGLKALRIVDASVFPNITSGNI 518
Cdd:PLN02785 487 VLNMSVKaNINLIPKHTNDtKSLEQFCKDTVITIWHYHGGCHVG-----KVVDQNYKVLGVSRLRVIDGSTFDESPGTNP 561
|
570 580
....*....|....*....|....*..
gi 1528361661 519 NAPTMMVAEKGADLILADALrGEAGGV 545
Cdd:PLN02785 562 QATVMMMGRYMGVKILRERL-GRAAGV 587
|
|
| Glf |
COG0562 |
UDP-galactopyranose mutase [Cell wall/membrane/envelope biogenesis]; |
1-33 |
4.69e-06 |
|
UDP-galactopyranose mutase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440328 [Multi-domain] Cd Length: 365 Bit Score: 48.95 E-value: 4.69e-06
10 20 30
....*....|....*....|....*....|...
gi 1528361661 1 MTYDYIIVGAGSAGCILANRLSESGRHSVLLLE 33
Cdd:COG0562 1 MMYDYLIVGAGFFGAVFAERLAEELGKKVLVID 33
|
|
| DadA |
COG0665 |
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism]; |
1-36 |
1.77e-04 |
|
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
Pssm-ID: 440429 [Multi-domain] Cd Length: 364 Bit Score: 44.13 E-value: 1.77e-04
10 20 30
....*....|....*....|....*....|....*.
gi 1528361661 1 MTYDYIIVGAGSAGCILANRLSESGrHSVLLLEAGE 36
Cdd:COG0665 1 ATADVVVIGGGIAGLSTAYHLARRG-LDVTVLERGR 35
|
|
| GG-red-SF |
TIGR02032 |
geranylgeranyl reductase family; This model represents a subfamily which includes ... |
3-36 |
3.24e-04 |
|
geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]
Pssm-ID: 273936 [Multi-domain] Cd Length: 295 Bit Score: 42.69 E-value: 3.24e-04
10 20 30
....*....|....*....|....*....|....
gi 1528361661 3 YDYIIVGAGSAGCILANRLSESGRHsVLLLEAGE 36
Cdd:TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLR-VLLLEKKS 33
|
|
| PTZ00367 |
PTZ00367 |
squalene epoxidase; Provisional |
3-33 |
6.16e-04 |
|
squalene epoxidase; Provisional
Pssm-ID: 240384 [Multi-domain] Cd Length: 567 Bit Score: 42.53 E-value: 6.16e-04
10 20 30
....*....|....*....|....*....|.
gi 1528361661 3 YDYIIVGAGSAGCILANRLSESGRhSVLLLE 33
Cdd:PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGR-KVLMLE 63
|
|
| LhgO |
COG0579 |
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism]; |
1-37 |
4.49e-03 |
|
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
Pssm-ID: 440344 [Multi-domain] Cd Length: 418 Bit Score: 39.74 E-value: 4.49e-03
10 20 30
....*....|....*....|....*....|....*..
gi 1528361661 1 MTYDYIIVGAGSAGCILANRLSESGRHSVLLLEAGEQ 37
Cdd:COG0579 3 EMYDVVIIGAGIVGLALARELSRYEDLKVLVLEKEDD 39
|
|
|