|
Name |
Accession |
Description |
Interval |
E-value |
| ProV |
COG4175 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
1-273 |
1.34e-179 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443334 [Multi-domain] Cd Length: 389 Bit Score: 499.24 E-value: 1.34e-179
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 1 MATIDVRHVYKLFGPEAAhpRVLDLLRAGKRKADVLSETGCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIE 80
Cdd:COG4175 1 MPKIEVRNLYKIFGKRPE--RALKLLDQGKSKDEILEKTGQTVGVNDASFDVEEGEIFVIMGLSGSGKSTLVRCLNRLIE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 81 PTAGEIVIDGNDVIRLDANGLRELRRYKVSMVFQNFGLLPHQTVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGE 160
Cdd:COG4175 79 PTAGEVLIDGEDITKLSKKELRELRRKKMSMVFQHFALLPHRTVLENVAFGLEIQGVPKAERRERAREALELVGLAGWED 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 161 HYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILR 240
Cdd:COG4175 159 SYPDELSGGMQQRVGLARALATDPDILLMDEAFSALDPLIRREMQDELLELQAKLKKTIVFITHDLDEALRLGDRIAIMK 238
|
250 260 270
....*....|....*....|....*....|...
gi 1528361663 241 DGTLVQVGTPDDILSRPADEYVRRFVEkrtGVN 273
Cdd:COG4175 239 DGRIVQIGTPEEILTNPANDYVADFVE---DVD 268
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
4-267 |
8.14e-152 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 424.36 E-value: 8.14e-152
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 4 IDVRHVYKLFGPEAAhpRVLDLLRAGKRKADVLSETGCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTA 83
Cdd:cd03294 1 IKIKGLYKIFGKNPQ--KAFKLLAKGKSKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 84 GEIVIDGNDVIRLDANGLRELRRYKVSMVFQNFGLLPHQTVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYP 163
Cdd:cd03294 79 GKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 164 DELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGT 243
Cdd:cd03294 159 DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGR 238
|
250 260
....*....|....*....|....
gi 1528361663 244 LVQVGTPDDILSRPADEYVRRFVE 267
Cdd:cd03294 239 LVQVGTPEEILTNPANDYVREFFR 262
|
|
| proV |
TIGR01186 |
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine ... |
39-268 |
9.77e-112 |
|
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130254 [Multi-domain] Cd Length: 363 Bit Score: 326.42 E-value: 9.77e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 39 TGCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRYKVSMVFQNFGL 118
Cdd:TIGR01186 3 TGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 119 LPHQTVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDP 198
Cdd:TIGR01186 83 FPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDP 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 199 LIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFVEK 268
Cdd:TIGR01186 163 LIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFIGK 232
|
|
| OpuBA |
COG1125 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
40-266 |
7.47e-104 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440742 [Multi-domain] Cd Length: 306 Bit Score: 304.32 E-value: 7.47e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 40 GCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANglrELRR---YkvsmVFQNF 116
Cdd:COG1125 13 DGTVAVDDLSLTIPAGEFTVLVGPSGCGKTTTLRMINRLIEPTSGRILIDGEDIRDLDPV---ELRRrigY----VIQQI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 117 GLLPHQTVLDNAAYALRTRGENRPDALDAARNWLTKVGLD--GYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFS 194
Cdd:COG1125 86 GLFPHMTVAENIATVPRLLGWDKERIRARVDELLELVGLDpeEYRDRYPHELSGGQQQRVGVARALAADPPILLMDEPFG 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1528361663 195 ALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFV 266
Cdd:COG1125 166 ALDPITREQLQDELLRLQRELGKTIVFVTHDIDEALKLGDRIAVMREGRIVQYDTPEEILANPANDFVADFV 237
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
4-265 |
3.16e-102 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 303.49 E-value: 3.16e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 4 IDVRHVYKLFGPeaaHP-RVLDLLRAGKRKADVLSETGCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPT 82
Cdd:PRK10070 5 LEIKNLYKIFGE---HPqRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 83 AGEIVIDGNDVIRLDANGLRELRRYKVSMVFQNFGLLPHQTVLDNAAYALRTRG----ENRPDALDAARnwltKVGLDGY 158
Cdd:PRK10070 82 RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGinaeERREKALDALR----QVGLENY 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 159 GEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAI 238
Cdd:PRK10070 158 AHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAI 237
|
250 260
....*....|....*....|....*..
gi 1528361663 239 LRDGTLVQVGTPDDILSRPADEYVRRF 265
Cdd:PRK10070 238 MQNGEVVQVGTPDEILNNPANDYVRTF 264
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
45-269 |
1.69e-93 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 275.72 E-value: 1.69e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANglrELRRyKVSMVFQNFGLLPHQTV 124
Cdd:cd03295 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPV---ELRR-KIGYVIQQIGLFPHMTV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRGENRPDALDAARNWLTKVGLD--GYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRT 202
Cdd:cd03295 93 EENIALVPKLLKWPKEKIRERADELLALVGLDpaEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRD 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1528361663 203 EMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFVEKR 269
Cdd:cd03295 173 QLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVAEFVGAD 239
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-266 |
2.39e-88 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 266.58 E-value: 2.39e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 1 MATIDVRHVYKLFGPEAAhprvldllragkrkadvlsetgcnvgLNDVSLGIASGEIFVIMGLSGSGKSTLVRhfnrLI- 79
Cdd:COG3842 3 MPALELENVSKRYGDVTA--------------------------LDDVSLSIEPGEFVALLGPSGCGKTTLLR----MIa 52
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 80 ---EPTAGEIVIDGNDVIRLDANglrelRRyKVSMVFQNFGLLPHQTVLDNAAYALRTRGENRPDALDAARNWLTKVGLD 156
Cdd:COG3842 53 gfeTPDSGRILLDGRDVTGLPPE-----KR-NVGMVFQDYALFPHLTVAENVAFGLRMRGVPKAEIRARVAELLELVGLE 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 157 GYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRI 236
Cdd:COG3842 127 GLADRYPHQLSGGQQQRVALARALAPEPRVLLLDEPLSALDAKLREEMREELRRLQRELGITFIYVTHDQEEALALADRI 206
|
250 260 270
....*....|....*....|....*....|
gi 1528361663 237 AILRDGTLVQVGTPDDILSRPADEYVRRFV 266
Cdd:COG3842 207 AVMNDGRIEQVGTPEEIYERPATRFVADFI 236
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-269 |
3.60e-85 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 255.01 E-value: 3.60e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 1 MATIDVRHVYKLFGPEAAHPRVLDllragkrkadvlsetgcnvglnDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIE 80
Cdd:COG1116 5 APALELRGVSKRFPTGGGGVTALD----------------------DVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEK 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 81 PTAGEIVIDGNDVIRLDAnglrelrryKVSMVFQNFGLLPHQTVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGE 160
Cdd:COG1116 63 PTSGEVLVDGKPVTGPGP---------DRGVVFQEPALLPWLTVLDNVALGLELRGVPKAERRERARELLELVGLAGFED 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 161 HYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAIL- 239
Cdd:COG1116 134 AYPHQLSGGMRQRVAIARALANDPEVLLMDEPFGALDALTRERLQDELLRLWQETGKTVLFVTHDVDEAVFLADRVVVLs 213
|
250 260 270
....*....|....*....|....*....|....
gi 1528361663 240 -RDGTLVQVGTPDdiLSRPADEYVR---RFVEKR 269
Cdd:COG1116 214 aRPGRIVEEIDVD--LPRPRDRELRtspEFAALR 245
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
40-248 |
2.01e-80 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 241.27 E-value: 2.01e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 40 GCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDAnglrelRRYKVSMVFQNFGLL 119
Cdd:cd03259 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP------ERRNIGMVFQDYALF 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 120 PHQTVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPL 199
Cdd:cd03259 85 PHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAK 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1528361663 200 IRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVG 248
Cdd:cd03259 165 LREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-266 |
2.21e-80 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 246.14 E-value: 2.21e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 1 MATIDVRHVYKLFGPEAAhprvldllragkrkadvlsetgcnvgLNDVSLGIASGEIFVIMGLSGSGKSTLVRhfnrLI- 79
Cdd:COG3839 1 MASLELENVSKSYGGVEA--------------------------LKDIDLDIEDGEFLVLLGPSGCGKSTLLR----MIa 50
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 80 ---EPTAGEIVIDGNDVirldaNGLRELRRyKVSMVFQNFGLLPHQTVLDNAAYALRTRGENRPDALDAARNWLTKVGLD 156
Cdd:COG3839 51 gleDPTSGEILIGGRDV-----TDLPPKDR-NIAMVFQSYALYPHMTVYENIAFPLKLRKVPKAEIDRRVREAAELLGLE 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 157 GYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRI 236
Cdd:COG3839 125 DLLDRKPKQLSGGQRQRVALGRALVREPKVFLLDEPLSNLDAKLRVEMRAEIKRLHRRLGTTTIYVTHDQVEAMTLADRI 204
|
250 260 270
....*....|....*....|....*....|
gi 1528361663 237 AILRDGTLVQVGTPDDILSRPADEYVRRFV 266
Cdd:COG3839 205 AVMNDGRIQQVGTPEELYDRPANLFVAGFI 234
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
4-247 |
2.47e-80 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 241.22 E-value: 2.47e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 4 IDVRHVYKLFGPEAAHPRVLDllragkrkadvlsetgcnvglnDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTA 83
Cdd:cd03293 1 LEVRNVSKTYGGGGGAVTALE----------------------DISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTS 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 84 GEIVIDGNDVIRLDAnglrelrryKVSMVFQNFGLLPHQTVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYP 163
Cdd:cd03293 59 GEVLVDGEPVTGPGP---------DRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 164 DELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAIL--RD 241
Cdd:cd03293 130 HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLsaRP 209
|
....*.
gi 1528361663 242 GTLVQV 247
Cdd:cd03293 210 GRIVAE 215
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
45-266 |
5.15e-78 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 236.03 E-value: 5.15e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRyKVSMVFQNFGLLPHQTV 124
Cdd:COG1127 21 LDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKELYELRR-RIGMLFQGGALFDSLTV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRGE-NRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTE 203
Cdd:COG1127 100 FENVAFPLREHTDlSEAEIRELVLEKLELVGLPGAADKMPSELSGGMRKRVALARALALDPEILLYDEPTAGLDPITSAV 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1528361663 204 MQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPaDEYVRRFV 266
Cdd:COG1127 180 IDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELLASD-DPWVRQFL 241
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
45-266 |
6.30e-76 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 234.66 E-value: 6.30e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRhfnrLI----EPTAGEIVIDGNDV-IRLDAnglrelRRYKVSMVFQNFGLL 119
Cdd:COG1118 18 LDDVSLEIASGELVALLGPSGSGKTTLLR----IIagleTPDSGRIVLNGRDLfTNLPP------RERRVGFVFQHYALF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 120 PHQTVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPL 199
Cdd:COG1118 88 PHMTVAENIAFGLRVRPPSKAEIRARVEELLELVQLEGLADRYPSQLSGGQRQRVALARALAVEPEVLLLDEPFGALDAK 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1528361663 200 IRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFV 266
Cdd:COG1118 168 VRKELRRWLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPDEVYDRPATPFVARFL 234
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
45-264 |
3.04e-75 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 237.88 E-value: 3.04e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRyKVSMVFQN-FG-LLPHQ 122
Cdd:COG1123 281 VDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRSLRELRR-RVQMVFQDpYSsLNPRM 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TVLDNAAYALRTRGE-NRPDALDAARNWLTKVGLD-GYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLI 200
Cdd:COG1123 360 TVGDIIAEPLRLHGLlSRAERRERVAELLERVGLPpDLADRYPHELSGGQRQRVAIARALALEPKLLILDEPTSALDVSV 439
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 201 RTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRR 264
Cdd:COG1123 440 QAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEVFANPQHPYTRA 503
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
45-268 |
6.88e-75 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 228.34 E-value: 6.88e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANgLRELRRyKVSMVFQNFGLLPHQTV 124
Cdd:COG1126 17 LKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTDSKKD-INKLRR-KVGMVFQQFNLFPHLTV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRT-RGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPlirtE 203
Cdd:COG1126 95 LENVTLAPIKvKKMSKAEAEERAMELLERVGLADKADAYPAQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDP----E 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361663 204 MQDQLLELQATLSK---TIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFVEK 268
Cdd:COG1126 171 LVGEVLDVMRDLAKegmTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPEEFFENPQHERTRAFLSK 238
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
45-266 |
2.40e-74 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 230.35 E-value: 2.40e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRyKVSMVFQNFGLLPHQTV 124
Cdd:COG1135 21 LDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERELRAARR-KIGMIFQHFNLLSSRTV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPlirtEM 204
Cdd:COG1135 100 AENVALPLEIAGVPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDP----ET 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1528361663 205 QDQLLEL----QATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFV 266
Cdd:COG1135 176 TRSILDLlkdiNRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPVLDVFANPQSELTRRFL 241
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
45-265 |
1.75e-71 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 219.30 E-value: 1.75e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRyKVSMVFQNFGLLPHQTV 124
Cdd:cd03261 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR-RMGMLFQSGALFDSLTV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRGE-NRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTE 203
Cdd:cd03261 95 FENVAFPLREHTRlSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGV 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1528361663 204 MQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPaDEYVRRF 265
Cdd:cd03261 175 IDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASD-DPLVRQF 235
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
43-266 |
4.88e-71 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 218.26 E-value: 4.88e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 43 VGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANglrelrRYKVSMVFQNFGLLPHQ 122
Cdd:cd03300 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH------KRPVNTVFQNYALFPHL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRT 202
Cdd:cd03300 88 TVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRK 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 203 EMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFV 266
Cdd:cd03300 168 DMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPANRFVADFI 231
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
45-257 |
9.06e-70 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 215.14 E-value: 9.06e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRyKVSMVFQNFGLLPHQTV 124
Cdd:cd03258 21 LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARR-RIGMIFQHFNLLSSRTV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEM 204
Cdd:cd03258 100 FENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSI 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1528361663 205 QDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRP 257
Cdd:cd03258 180 LALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFANP 232
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
45-257 |
2.75e-69 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 213.73 E-value: 2.75e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDangLRELRRyKVSMVFQNfgllP-HQ- 122
Cdd:COG1122 17 LDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKN---LRELRR-KVGLVFQN----PdDQl 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 ---TVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPL 199
Cdd:COG1122 89 fapTVEEDVAFGPENLGLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEVLVLDEPTAGLDPR 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361663 200 IRTEMQDQLLELQATlSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRP 257
Cdd:COG1122 169 GRRELLELLKRLNKE-GKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFSDY 225
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
45-244 |
9.89e-69 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 211.58 E-value: 9.89e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRYKVSMVFQNFGLLPHQTV 124
Cdd:cd03255 20 LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEM 204
Cdd:cd03255 100 LENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEV 179
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1528361663 205 QDQLLELQATLSKTIVFITHDLDEAlRIGDRIAILRDGTL 244
Cdd:cd03255 180 MELLRELNKEAGTTIVVVTHDPELA-EYADRIIELRDGKI 218
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
43-266 |
1.12e-66 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 210.81 E-value: 1.12e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 43 VGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRyKVSMVFQNFGLLPHQ 122
Cdd:PRK11153 19 HALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARR-QIGMIFQHFNLLSSR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPlirt 202
Cdd:PRK11153 98 TVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDP---- 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361663 203 EMQDQLLEL----QATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFV 266
Cdd:PRK11153 174 ATTRSILELlkdiNRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKHPLTREFI 241
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
45-243 |
3.34e-66 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 203.96 E-value: 3.34e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANgLRELRRyKVSMVFQNFGLLPHQTV 124
Cdd:cd03229 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDE-LPPLRR-RIGMVFQDFALFPHLTV 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALrtrgenrpdaldaarnwltkvgldgygehypdelSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEM 204
Cdd:cd03229 94 LENIALGL----------------------------------SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREV 139
|
170 180 190
....*....|....*....|....*....|....*....
gi 1528361663 205 QDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGT 243
Cdd:cd03229 140 RALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
43-266 |
6.10e-66 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 205.27 E-value: 6.10e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 43 VGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDAnglrelRRYKVSMVFQNFGLLPHQ 122
Cdd:cd03296 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV------QERNVGFVFQHYALFRHM 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TVLDNAAYALRTR-GENRPDALDAAR---NWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDP 198
Cdd:cd03296 90 TVFDNVAFGLRVKpRSERPPEAEIRAkvhELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDA 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361663 199 LIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFV 266
Cdd:cd03296 170 KVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPFVYSFL 237
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-270 |
2.43e-65 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 204.71 E-value: 2.43e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 1 MATIDVRHVYKLFGPEAAHPRVLDllragkrkadvlsetgcnvglnDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIE 80
Cdd:COG4525 1 MSMLTVRHVSVRYPGGGQPQPALQ----------------------DVSLTIESGEFVVALGASGCGKTTLLNLIAGFLA 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 81 PTAGEIVIDGNDVIRLDANglrelrRykvSMVFQNFGLLPHQTVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGE 160
Cdd:COG4525 59 PSSGEITLDGVPVTGPGAD------R---GVVFQKDALLPWLNVLDNVAFGLRLRGVPKAERRARAEELLALVGLADFAR 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 161 HYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILR 240
Cdd:COG4525 130 RRIWQLSGGMRQRVGIARALAADPRFLLMDEPFGALDALTREQMQELLLDVWQRTGKGVFLITHSVEEALFLATRLVVMS 209
|
250 260 270
....*....|....*....|....*....|
gi 1528361663 241 DGtlvqvgtPDDILSRPADEYVRRFVEKRT 270
Cdd:COG4525 210 PG-------PGRIVERLELDFSRRFLAGED 232
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
40-248 |
2.98e-65 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 202.87 E-value: 2.98e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 40 GCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANglrelrRYKVSMVFQNFGLL 119
Cdd:cd03301 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK------DRDIAMVFQNYALY 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 120 PHQTVLDNAAYALRTRGEnRPDALDAARNWLTKV-GLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDP 198
Cdd:cd03301 85 PHMTVYDNIAFGLKLRKV-PKDEIDERVREVAELlQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDA 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1528361663 199 LIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVG 248
Cdd:cd03301 164 KLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
45-245 |
3.33e-64 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 200.65 E-value: 3.33e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLvrhFN---RLIEPTAGEIVIDGNDVIRLDANGLRELRRYKVSMVFQNFGLLPH 121
Cdd:COG1136 24 LRGVSLSIEAGEFVAIVGPSGSGKSTL---LNilgGLDRPTSGEVLIDGQDISSLSERELARLRRRHIGFVFQFFNLLPE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 122 QTVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIR 201
Cdd:COG1136 101 LTALENVALPLLLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALVNRPKLILADEPTGNLDSKTG 180
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1528361663 202 TEMQDQLLELQATLSKTIVFITHDLdEALRIGDRIAILRDGTLV 245
Cdd:COG1136 181 EEVLELLRELNRELGTTIVMVTHDP-ELAARADRVIRLRDGRIV 223
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
45-244 |
1.56e-63 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 198.52 E-value: 1.56e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGnDVIRLDANGLRELRRyKVSMVFQNFGLLPHQTV 124
Cdd:cd03262 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDG-LKLTDDKKNINELRQ-KVGMVFQQFNLFPHLTV 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRT-RGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPlirtE 203
Cdd:cd03262 94 LENITLAPIKvKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDP----E 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1528361663 204 MQDQLLELQATLSK---TIVFITHDLDEALRIGDRIAILRDGTL 244
Cdd:cd03262 170 LVGEVLDVMKDLAEegmTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
60-266 |
3.65e-61 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 196.18 E-value: 3.65e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 60 IMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANglrelRRYkVSMVFQNFGLLPHQTVLDNAAYALRTRGENR 139
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH-----LRH-INMVFQSYALFPHMTVEENVAFGLKMRKVPR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 140 PDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQDQLLELQATLSKTI 219
Cdd:TIGR01187 75 AEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITF 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1528361663 220 VFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFV 266
Cdd:TIGR01187 155 VFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFI 201
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
45-268 |
5.78e-61 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 192.59 E-value: 5.78e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRldanGLRELRRyKVSMVFQNFGLLPHQTV 124
Cdd:COG1131 16 LDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVAR----DPAEVRR-RIGYVPQEPALYPDLTV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEM 204
Cdd:COG1131 91 RENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPTSGLDPEARREL 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 205 QDQLLELQATlSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFVEK 268
Cdd:COG1131 171 WELLRELAAE-GKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKARLLEDVFLELTGE 233
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
45-266 |
1.44e-60 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 195.30 E-value: 1.44e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDAnglrelRRYKVSMVFQNFGLLPHQTV 124
Cdd:PRK10851 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA------RDRKVGFVFQHYALFRHMTV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRT--RGEnRPDAlDAARNWLTK----VGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDP 198
Cdd:PRK10851 92 FDNIAFGLTVlpRRE-RPNA-AAIKAKVTQllemVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDA 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361663 199 LIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFV 266
Cdd:PRK10851 170 QVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRFVLEFM 237
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
45-243 |
2.07e-60 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 190.37 E-value: 2.07e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDvirLDANGLRELRRyKVSMVFQNfgllP-HQ- 122
Cdd:cd03225 17 LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKD---LTKLSLKELRR-KVGLVFQN----PdDQf 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 ---TVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPL 199
Cdd:cd03225 89 fgpTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1528361663 200 IRTEMQDQLLELQATlSKTIVFITHDLDEALRIGDRIAILRDGT 243
Cdd:cd03225 169 GRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
45-267 |
4.42e-60 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 190.69 E-value: 4.42e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDViRLDANGLRELRRyKVSMVFQNFGLLPHQTV 124
Cdd:PRK09493 17 LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKV-NDPKVDERLIRQ-EAGMVFQQFYLFPHLTA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYA-LRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTE 203
Cdd:PRK09493 95 LENVMFGpLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHE 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361663 204 ----MQDqllelQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFVE 267
Cdd:PRK09493 175 vlkvMQD-----LAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRLQEFLQ 237
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
45-266 |
4.82e-60 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 194.78 E-value: 4.82e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDAnglrELRryKVSMVFQNFGLLPHQTV 124
Cdd:PRK09452 30 ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPA----ENR--HVNTVFQSYALFPHMTV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRG----ENRPDALDAarnwLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLI 200
Cdd:PRK09452 104 FENVAFGLRMQKtpaaEITPRVMEA----LRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1528361663 201 RTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFV 266
Cdd:PRK09452 180 RKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLFVARFI 245
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
45-258 |
6.76e-59 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 189.88 E-value: 6.76e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEP---TAGEIVIDGNDVIRLDANGLRELRRYKVSMVFQN-FGLL- 119
Cdd:COG0444 21 VDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLLKLSEKELRKIRGREIQMIFQDpMTSLn 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 120 PHQTVLDNAAYALRT-RGENRPDALDAARNWLTKVGLDGYGEH---YPDELSGGMRQRVGLARALAADTDVLLMDEAFSA 195
Cdd:COG0444 101 PVMTVGDQIAEPLRIhGGLSKAEARERAIELLERVGLPDPERRldrYPHELSGGMRQRVMIARALALEPKLLIADEPTTA 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1528361663 196 LDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPA 258
Cdd:COG0444 181 LDVTIQAQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVMYAGRIVEEGPVEELFENPR 243
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
42-253 |
9.48e-59 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 187.19 E-value: 9.48e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 42 NVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRyKVSMVFQNFGLLPH 121
Cdd:COG3638 16 TPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGRALRRLRR-RIGMIFQQFNLVPR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 122 QTVLDNA-----AY--ALRT-RGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAF 193
Cdd:COG3638 95 LSVLTNVlagrlGRtsTWRSlLGLFPPEDRERALEALERVGLADKAYQRADQLSGGQQQRVAIARALVQEPKLILADEPV 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 194 SALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDI 253
Cdd:COG3638 175 ASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIGLRDGRVVFDGPPAEL 234
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
45-248 |
1.76e-58 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 185.79 E-value: 1.76e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDaNGLRELRRYKVSMVFQN-FGLL-PHQ 122
Cdd:cd03257 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLS-RRLRKIRRKEIQMVFQDpMSSLnPRM 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEH---YPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPL 199
Cdd:cd03257 100 TIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVlnrYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVS 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1528361663 200 IRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVG 248
Cdd:cd03257 180 VQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
45-258 |
3.22e-57 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 190.88 E-value: 3.22e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTA---GEIVIDGNDVIRLDAnglrELRRYKVSMVFQNFG--LL 119
Cdd:COG1123 22 VDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGGrisGEVLLDGRDLLELSE----ALRGRRIGMVFQDPMtqLN 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 120 PHqTVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPL 199
Cdd:COG1123 98 PV-TVGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALDPDLLIADEPTTALDVT 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1528361663 200 IRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPA 258
Cdd:COG1123 177 TQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAAPQ 235
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
32-266 |
4.58e-57 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 182.54 E-value: 4.58e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 32 KADVLSETGCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDAnglrELRRykVSM 111
Cdd:cd03299 2 KVENLSKDWKEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP----EKRD--ISY 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 112 VFQNFGLLPHQTVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDE 191
Cdd:cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDE 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1528361663 192 AFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFV 266
Cdd:cd03299 156 PFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEFVAEFL 230
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
49-265 |
1.34e-56 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 181.11 E-value: 1.34e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 49 SLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLdANGLRelrryKVSMVFQNFGLLPHQTVLDNA 128
Cdd:COG3840 19 DLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTAL-PPAER-----PVSMLFQENNLFPHLTVAQNI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 129 AYALRTRGenRPDALDAAR--NWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQD 206
Cdd:COG3840 93 GLGLRPGL--KLTAEQRAQveQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEPFSALDPALRQEMLD 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1528361663 207 QLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRF 265
Cdd:COG3840 171 LVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLDGEPPPALAAY 229
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
45-253 |
1.53e-56 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 180.84 E-value: 1.53e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIE-----PTAGEIVIDGNDVIRLDANGLrELRRyKVSMVFQNFGLL 119
Cdd:cd03260 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDlipgaPDEGEVLLDGKDIYDLDVDVL-ELRR-RVGMVFQKPNPF 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 120 PhQTVLDNAAYALRTRGENRPDALDA-ARNWLTKVGLDGYG--EHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSAL 196
Cdd:cd03260 94 P-GSIYDNVAYGLRLHGIKLKEELDErVEEALRKAALWDEVkdRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSAL 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1528361663 197 DPLIRTEMQDQLLELQATLskTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDI 253
Cdd:cd03260 173 DPISTAKIEELIAELKKEY--TIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
4-267 |
2.68e-56 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 181.15 E-value: 2.68e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 4 IDVRHVYKLFGPEAAHPRVLDllragkrkadvlsetgcnvglnDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTA 83
Cdd:COG1124 2 LEVRNLSVSYGQGGRRVPVLK----------------------DVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWS 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 84 GEIVIDGNDVIRLDangLRELRRyKVSMVFQN-FGLL-PHQTVLDNAAYALRTRGenRPDALDAARNWLTKVGLD-GYGE 160
Cdd:COG1124 60 GEVTFDGRPVTRRR---RKAFRR-RVQMVFQDpYASLhPRHTVDRILAEPLRIHG--LPDREERIAELLEQVGLPpSFLD 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 161 HYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILR 240
Cdd:COG1124 134 RYPHQLSGGQRQRVAIARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQ 213
|
250 260
....*....|....*....|....*..
gi 1528361663 241 DGTLVQVGTPDDILSRPADEYVRRFVE 267
Cdd:COG1124 214 NGRIVEELTVADLLAGPKHPYTRELLA 240
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
45-248 |
4.06e-56 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 179.86 E-value: 4.06e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRyKVSMVFQNFGLLPHQTV 124
Cdd:COG2884 18 LSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPYLRR-RIGVVFQDFRLLPDRTV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPlirtEM 204
Cdd:COG2884 97 YENVALPLRVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPELLLADEPTGNLDP----ET 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1528361663 205 QDQLLELQATLSK---TIVFITHDLDEALRIGDRIAILRDGTLVQVG 248
Cdd:COG2884 173 SWEIMELLEEINRrgtTVLIATHDLELVDRMPKRVLELEDGRLVRDE 219
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
44-253 |
1.78e-55 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 178.53 E-value: 1.78e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 44 GLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRyKVSMVFQNFGLLPHQT 123
Cdd:cd03256 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR-QIGMIFQQFNLIERLS 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 124 VLDNA------------AYALRTRGENRPDALDAarnwLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDE 191
Cdd:cd03256 95 VLENVlsgrlgrrstwrSLFGLFPKEEKQRALAA----LERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1528361663 192 AFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDI 253
Cdd:cd03256 171 PVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
45-256 |
1.29e-54 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 177.24 E-value: 1.29e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVirLDANGLRELRRyKVSMVFQNfgllP-HQ- 122
Cdd:TIGR04520 18 LKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGLDT--LDEENLWEIRK-KVGMVFQN----PdNQf 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 ---TVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPL 199
Cdd:TIGR04520 91 vgaTVEDDVAFGLENLGVPREEMRKRVDEALKLVGMEDFRDREPHLLSGGQKQRVAIAGVLAMRPDIIILDEATSMLDPK 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1528361663 200 IRTEMQDQLLELQATLSKTIVFITHDLDEALRiGDRIAILRDGTLVQVGTPDDILSR 256
Cdd:TIGR04520 171 GRKEVLETIRKLNKEEGITVISITHDMEEAVL-ADRVIVMNKGKIVAEGTPREIFSQ 226
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
45-267 |
9.32e-53 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 172.19 E-value: 9.32e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVirldaNGLRELRrykvSMVFQNFGLLPHQTV 124
Cdd:PRK11248 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPV-----EGPGAER----GVVFQNEGLLPWRNV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEM 204
Cdd:PRK11248 88 QDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQM 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1528361663 205 QDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGtlvqvgtPDDILSRPADEYVRRFVE 267
Cdd:PRK11248 168 QTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPG-------PGRVVERLPLNFARRFVA 223
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
45-263 |
1.11e-52 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 174.15 E-value: 1.11e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRyKVSMVFQN-FGLL-PHQ 122
Cdd:COG4608 34 VDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGLSGRELRPLRR-RMQMVFQDpYASLnPRM 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TVLDNAAYALRTRG-ENRPDALDAARNWLTKVGLD-GYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLI 200
Cdd:COG4608 113 TVGDIIAEPLRIHGlASKAERRERVAELLELVGLRpEHADRYPHEFSGGQRQRIGIARALALNPKLIVCDEPVSALDVSI 192
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1528361663 201 RTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVR 263
Cdd:COG4608 193 QAQVLNLLEDLQDELGLTYLFISHDLSVVRHISDRVAVMYLGKIVEIAPRDELYARPLHPYTQ 255
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
45-255 |
1.53e-52 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 171.38 E-value: 1.53e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDAnglRELRRyKVSMVFQNFGLLPHQTV 124
Cdd:COG1120 17 LDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSR---RELAR-RIAYVPQEPPAPFGLTV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYA----LRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLI 200
Cdd:COG1120 93 RELVALGryphLGLFGRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPLLLLDEPTSHLDLAH 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1528361663 201 RTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILS 255
Cdd:COG1120 173 QLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVLT 227
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
40-265 |
6.91e-52 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 172.98 E-value: 6.91e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 40 GCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRldanglRELRRYKVSMVFQNFGLL 119
Cdd:PRK11432 17 GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTH------RSIQQRDICMVFQSYALF 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 120 PHQTVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPL 199
Cdd:PRK11432 91 PHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDAN 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1528361663 200 IRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRF 265
Cdd:PRK11432 171 LRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFMASF 236
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
43-253 |
7.00e-52 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 169.40 E-value: 7.00e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 43 VGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRyKVSMVFQNFGLLPHQ 122
Cdd:TIGR02315 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR-RIGMIFQHYNLIERL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TVLDN-------AAYALRT-----RGENRPDALDAarnwLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMD 190
Cdd:TIGR02315 95 TVLENvlhgrlgYKPTWRSllgrfSEEDKERALSA----LERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILAD 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1528361663 191 EAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDI 253
Cdd:TIGR02315 171 EPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
42-260 |
1.44e-51 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 168.88 E-value: 1.44e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 42 NVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDanglRELRRyKVSMVFQNFGLLPH 121
Cdd:COG4555 14 VPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEP----REARR-QIGVLPDERGLYDR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 122 QTVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIR 201
Cdd:COG4555 89 LTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPTNGLDVMAR 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1528361663 202 TEMQDQLLELqATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADE 260
Cdd:COG4555 169 RLLREILRAL-KKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEIGEE 226
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
45-248 |
1.95e-51 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 167.47 E-value: 1.95e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIA---SGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIdgNDVIRLDANGLREL--RRYKVSMVFQNFGLL 119
Cdd:cd03297 10 LPDFTLKIDfdlNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVL--NGTVLFDSRKKINLppQQRKIGLVFQQYALF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 120 PHQTVLDNAAYALRtRGENRPDaLDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPL 199
Cdd:cd03297 88 PHLNVRENLAFGLK-RKRNRED-RISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRA 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1528361663 200 IRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVG 248
Cdd:cd03297 166 LRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
45-249 |
8.36e-51 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 166.73 E-value: 8.36e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDV---IRLDANGLRELRRyKVSMVFQNFGLLPH 121
Cdd:COG4161 18 LFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQFdfsQKPSEKAIRLLRQ-KVGMVFQQYNLWPH 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 122 QTVLDNAAYA-LRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLI 200
Cdd:COG4161 97 LTVMENLIEApCKVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1528361663 201 RTEMQDQLLELQATlSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGT 249
Cdd:COG4161 177 TAQVVEIIRELSQT-GITQVIVTHEVEFARKVASQVVYMEKGRIIEQGD 224
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
45-271 |
5.79e-50 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 165.21 E-value: 5.79e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIE--PTA---GEIVIDGNDVIRLDANgLRELRRyKVSMVFQNFGLL 119
Cdd:COG1117 27 LKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMNDliPGArveGEILLDGEDIYDPDVD-VVELRR-RVGMVFQKPNPF 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 120 PHqTVLDNAAYALRTRGENRPDALDAA-RNWLTKVGLdgygehyPDE-----------LSGGMRQRVGLARALAADTDVL 187
Cdd:COG1117 105 PK-SIYDNVAYGLRLHGIKSKSELDEIvEESLRKAAL-------WDEvkdrlkksalgLSGGQQQRLCIARALAVEPEVL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 188 LMDEAFSALDPlIRTEmqdQLLELQATLSK--TIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRF 265
Cdd:COG1117 177 LMDEPTSALDP-ISTA---KIEELILELKKdyTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTEQIFTNPKDKRTEDY 252
|
....*.
gi 1528361663 266 VEKRTG 271
Cdd:COG1117 253 ITGRFG 258
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
45-268 |
1.18e-49 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 164.15 E-value: 1.18e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAG-----EIVIDGNDVIRLDANGLRELRRyKVSMVFQNFGLL 119
Cdd:PRK11264 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGtirvgDITIDTARSLSQQKGLIRQLRQ-HVGFVFQNFNLF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 120 PHQTVLDNAAYA-LRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDP 198
Cdd:PRK11264 98 PHRTVLENIIEGpVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDP 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 199 LIRTEMQDQLLELqATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFVEK 268
Cdd:PRK11264 178 ELVGEVLNTIRQL-AQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPRTRQFLEK 246
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
45-266 |
1.30e-49 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 167.70 E-value: 1.30e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDvirldangLRELRRYK--VSMVFQNFGLLPHQ 122
Cdd:PRK11607 35 VDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVD--------LSHVPPYQrpINMMFQSYALFPHM 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRT 202
Cdd:PRK11607 107 TVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRD 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 203 EMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFV 266
Cdd:PRK11607 187 RMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFI 250
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
45-251 |
7.08e-48 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 158.75 E-value: 7.08e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRYKVSMVFQNFGLLPHQTV 124
Cdd:COG4181 28 LKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALDEDARARLRARHVGFVFQSFQLLPTLTA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRGenRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEM 204
Cdd:COG4181 108 LENVMLPLELAG--RRDARARARALLERVGLGHRLDHYPAQLSGGEQQRVALARAFATEPAILFADEPTGNLDAATGEQI 185
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1528361663 205 QDQLLELQATLSKTIVFITHDLDEALRIgDRIAILRDGTLVQVGTPD 251
Cdd:COG4181 186 IDLLFELNRERGTTLVLVTHDPALAARC-DRVLRLRAGRLVEDTAAT 231
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
42-244 |
5.29e-47 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 154.48 E-value: 5.29e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 42 NVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDanglRELRRyKVSMVFQNFGLLPH 121
Cdd:cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP----EEVKR-RIGYLPEEPSLYEN 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 122 QTVLDNAayalrtrgenrpdaldaarnwltkvgldgygehypdELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIR 201
Cdd:cd03230 88 LTVRENL------------------------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESR 131
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1528361663 202 TEMQDQLLELQATlSKTIVFITHDLDEALRIGDRIAILRDGTL 244
Cdd:cd03230 132 REFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
45-256 |
7.12e-47 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 157.87 E-value: 7.12e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGndvIRLDANGLRELRRyKVSMVFQNfgllPHQ-- 122
Cdd:PRK13635 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGG---MVLSEETVWDVRR-QVGMVFQN----PDNqf 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 ---TVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPL 199
Cdd:PRK13635 95 vgaTVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPR 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1528361663 200 IRTEMQDQLLELQATLSKTIVFITHDLDEALRiGDRIAILRDGTLVQVGTPDDILSR 256
Cdd:PRK13635 175 GRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIFKS 230
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
45-244 |
1.10e-46 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 154.97 E-value: 1.10e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDAnglRELRRyKVSMVFQNFGLLPhQTV 124
Cdd:COG4619 16 LSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPP---PEWRR-QVAYVPQEPALWG-GTV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRgeNRPDALDAARNWLTKVGLDGYGEHYP-DELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTE 203
Cdd:COG4619 91 RDNLPFPFQLR--ERKFDRERALELLERLGLPPDILDKPvERLSGGERQRLALIRALLLQPDVLLLDEPTSALDPENTRR 168
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1528361663 204 MQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTL 244
Cdd:COG4619 169 VEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
40-251 |
1.83e-46 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 155.56 E-value: 1.83e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 40 GCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDV---IRLDANGLRELRRyKVSMVFQNF 116
Cdd:PRK11124 13 GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFdfsKTPSDKAIRELRR-NVGMVFQQY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 117 GLLPHQTVLDNAAYA-LRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSA 195
Cdd:PRK11124 92 NLWPHLTVQQNLIEApCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAA 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1528361663 196 LDPLIRTEMQDQLLELQATlSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPD 251
Cdd:PRK11124 172 LDPEITAQIVSIIRELAET-GITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
45-254 |
2.41e-46 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 156.30 E-value: 2.41e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVirlDANGLRELRRyKVSMVFQN-----FGLl 119
Cdd:PRK13632 25 LKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITI---SKENLKEIRK-KIGIIFQNpdnqfIGA- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 120 phqTVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPL 199
Cdd:PRK13632 100 ---TVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1528361663 200 IRTEMQDQLLELQATLSKTIVFITHDLDEALrIGDRIAILRDGTLVQVGTPDDIL 254
Cdd:PRK13632 177 GKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEIL 230
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
47-248 |
2.89e-46 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 154.19 E-value: 2.89e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 47 DVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANglrelrRYKVSMVFQNFGLLPHQTVLD 126
Cdd:cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPA------DRPVSMLFQENNLFAHLTVEQ 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 127 NAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQD 206
Cdd:cd03298 90 NVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLD 169
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1528361663 207 QLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVG 248
Cdd:cd03298 170 LVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
45-266 |
2.95e-46 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 158.47 E-value: 2.95e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVirldaNGLrELRRYKVSMVFQNFGLLPHQTV 124
Cdd:PRK11650 20 IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVV-----NEL-EPADRDIAMVFQNYALYPHMSV 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRGENRPD----ALDAARnwltKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLI 200
Cdd:PRK11650 94 RENMAYGLKIRGMPKAEieerVAEAAR----ILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKL 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1528361663 201 RTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFV 266
Cdd:PRK11650 170 RVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPASTFVASFI 235
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
47-258 |
4.23e-45 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 155.26 E-value: 4.23e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 47 DVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGnDVIRLDANGLR---ELRRykVSMVFQNFGLLPHQT 123
Cdd:COG4148 17 DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGG-EVLQDSARGIFlppHRRR--IGYVFQEARLFPHLS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 124 VLDNAAYAL-RTRGENRPDALDAARNWLtkvGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRT 202
Cdd:COG4148 94 VRGNLLYGRkRAPRAERRISFDEVVELL---GIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLARKA 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1528361663 203 EMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPA 258
Cdd:COG4148 171 EILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSRPD 226
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
45-264 |
6.08e-45 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 158.69 E-value: 6.08e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIePTAGEIVIDGNDVIRLDANGLRELRRyKVSMVFQN-FGLL-PHQ 122
Cdd:COG4172 302 VDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLI-PSEGEIRFDGQDLDGLSRRALRPLRR-RMQVVFQDpFGSLsPRM 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TVLDNAAYALRT--RGENRPDALDAARNWLTKVGLD-GYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPL 199
Cdd:COG4172 380 TVGQIIAEGLRVhgPGLSAAERRARVAEALEEVGLDpAARHRYPHEFSGGQRQRIAIARALILEPKLLVLDEPTSALDVS 459
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1528361663 200 IRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRR 264
Cdd:COG4172 460 VQAQILDLLRDLQREHGLAYLFISHDLAVVRALAHRVMVMKDGKVVEQGPTEQVFDAPQHPYTRA 524
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
44-259 |
4.21e-44 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 150.94 E-value: 4.21e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 44 GLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIdGNDVIRLDANG--LRELRRyKVSMVFQnfglLP- 120
Cdd:PRK13634 22 ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI-GERVITAGKKNkkLKPLRK-KVGIVFQ----FPe 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 121 HQ----TVLDNAAYALRTRGENRPDALDAARNWLTKVGLD-GYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSA 195
Cdd:PRK13634 96 HQlfeeTVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPeELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAG 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 196 LDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPAD 259
Cdd:PRK13634 176 LDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPDE 239
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
45-258 |
6.11e-44 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 148.74 E-value: 6.11e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANglrELRRYKVSMVFQNFGLLPHQTV 124
Cdd:cd03219 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPH---EIARLGIGRTFQIPRLFPELTV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRG----------ENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFS 194
Cdd:cd03219 93 LENVMVAAQARTgsglllararREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAA 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 195 ALDPLIRTEMQDQLLELqATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPA 258
Cdd:cd03219 173 GLNPEETEELAELIREL-RERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNPR 235
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
45-259 |
6.43e-44 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 148.77 E-value: 6.43e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLrelrrykvsMVFQNFGLLPHQTV 124
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM---------VVFQNYSLLPWLTV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRT--RGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRT 202
Cdd:TIGR01184 72 RENIALAVDRvlPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361663 203 EMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDI-LSRPAD 259
Cdd:TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVpFPRPRD 209
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
45-266 |
3.08e-43 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 147.81 E-value: 3.08e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDvIRL-----------DANGLRELRRyKVSMVF 113
Cdd:PRK10619 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQT-INLvrdkdgqlkvaDKNQLRLLRT-RLTMVF 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 114 QNFGLLPHQTVLDNAAYA-LRTRGENRPDALDAARNWLTKVGLDGYGE-HYPDELSGGMRQRVGLARALAADTDVLLMDE 191
Cdd:PRK10619 99 QHFNLWSHMTVLENVMEApIQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIARALAMEPEVLLFDE 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361663 192 AFSALDPlirtEMQDQLLELQATLS---KTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFV 266
Cdd:PRK10619 179 PTSALDP----ELVGEVLRIMQQLAeegKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSPRLQQFL 252
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
45-243 |
1.26e-42 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 142.77 E-value: 1.26e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDanglRELRRYKVSMVFQnfgllphqtv 124
Cdd:cd00267 15 LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLP----LEELRRRIGYVPQ---------- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 ldnaayalrtrgenrpdaldaarnwltkvgldgygehypdeLSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEM 204
Cdd:cd00267 81 -----------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERL 119
|
170 180 190
....*....|....*....|....*....|....*....
gi 1528361663 205 QDQLLELQATlSKTIVFITHDLDEALRIGDRIAILRDGT 243
Cdd:cd00267 120 LELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
40-248 |
7.63e-42 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 141.80 E-value: 7.63e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 40 GCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDAnglRELRRyKVSMVFQnfgll 119
Cdd:cd03214 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSP---KELAR-KIAYVPQ----- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 120 phqtvldnaayalrtrgenrpdaldaarnWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPl 199
Cdd:cd03214 81 -----------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDI- 130
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1528361663 200 irtEMQDQLLELQATLS----KTIVFITHDLDEALRIGDRIAILRDGTLVQVG 248
Cdd:cd03214 131 ---AHQIELLELLRRLArergKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
45-267 |
7.73e-42 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 144.21 E-value: 7.73e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNdviRLDaNGLRELRRYKVSMVFQ--NFGLLPHQ 122
Cdd:COG4167 29 VKPVSFTLEAGQTLAIIGENGSGKSTLAKMLAGIIEPTSGEILINGH---KLE-YGDYKYRCKHIRMIFQdpNTSLNPRL 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TV---LDnAAYALRTRgenrpdaLDAA------RNWLTKVGLdgYGEH---YPDELSGGMRQRVGLARALAADTDVLLMD 190
Cdd:COG4167 105 NIgqiLE-EPLRLNTD-------LTAEereeriFATLRLVGL--LPEHanfYPHMLSSGQKQRVALARALILQPKIIIAD 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1528361663 191 EAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFVE 267
Cdd:COG4167 175 EALAALDMSVRSQIINLMLELQEKLGISYIYVSQHLGIVKHISDKVLVMHQGEVVEYGKTAEVFANPQHEVTKRLIE 251
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
40-271 |
1.13e-41 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 143.44 E-value: 1.13e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 40 GCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIE--PTA---GEIVIDGNDVIRLDANGLrELRRyKVSMVFQ 114
Cdd:PRK14267 15 GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLElnEEArveGEVRLFGRNIYSPDVDPI-EVRR-EVGMVFQ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 115 NFGLLPHQTVLDNAAYALRTRGENRP-DALDAARNW-LTKVGL----DGYGEHYPDELSGGMRQRVGLARALAADTDVLL 188
Cdd:PRK14267 93 YPNPFPHLTIYDNVAIGVKLNGLVKSkKELDERVEWaLKKAALwdevKDRLNDYPSNLSGGQRQRLVIARALAMKPKILL 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 189 MDEAFSALDPLIRTEMQDQLLELQATLskTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFVEK 268
Cdd:PRK14267 173 MDEPTANIDPVGTAKIEELLFELKKEY--TIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEHELTEKYVTG 250
|
...
gi 1528361663 269 RTG 271
Cdd:PRK14267 251 ALG 253
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
45-264 |
1.17e-41 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 149.83 E-value: 1.17e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKS----TLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRYKVSMVFQ------ 114
Cdd:COG4172 26 VKGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGQDLLGLSERELRRIRGNRIAMIFQepmtsl 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 115 NfgllPHQTVLDNAAYALRT-RGENRPDALDAARNWLTKVGLDGYGEH---YPDELSGGMRQRVGLARALAADTDVLLMD 190
Cdd:COG4172 106 N----PLHTIGKQIAEVLRLhRGLSGAAARARALELLERVGIPDPERRldaYPHQLSGGQRQRVMIAMALANEPDLLIAD 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 191 EAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRR 264
Cdd:COG4172 182 EPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFADRVAVMRQGEIVEQGPTAELFAAPQHPYTRK 255
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
45-256 |
1.42e-41 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 144.48 E-value: 1.42e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANG---LRELRrykvsmvfqnfGLLPH 121
Cdd:COG4152 17 VDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPEDRRRigyLPEER-----------GLYPK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 122 QTVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIR 201
Cdd:COG4152 86 MKVGEQLVYLARLKGLSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILDEPFSGLDPVNV 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1528361663 202 TEMQDQLLELQATlSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSR 256
Cdd:COG4152 166 ELLKDVIRELAAK-GTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRRQ 219
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
45-256 |
2.01e-41 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 149.93 E-value: 2.01e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDangLRELRRyKVSMVFQNFGLLpHQTV 124
Cdd:COG1132 356 LKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLT---LESLRR-QIGVVPQDTFLF-SGTI 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYAlrtrgenRPDALDAA-RNWLTKVGLDGYGEHYPD-----------ELSGGMRQRVGLARALAADTDVLLMDEA 192
Cdd:COG1132 431 RENIRYG-------RPDATDEEvEEAAKAAQAHEFIEALPDgydtvvgergvNLSGGQRQRIAIARALLKDPPILILDEA 503
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1528361663 193 FSALDPliRTEM--QDQLLELQAtlSKTIVFITHDLdEALRIGDRIAILRDGTLVQVGTPDDILSR 256
Cdd:COG1132 504 TSALDT--ETEAliQEALERLMK--GRTTIVIAHRL-STIRNADRILVLDDGRIVEQGTHEELLAR 564
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
38-251 |
2.04e-41 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 141.87 E-value: 2.04e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 38 ETGCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVirldANGLRELRRYkVSMVFQNFG 117
Cdd:cd03263 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSI----RTDRKAARQS-LGYCPQFDA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 118 LLPHQTVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALD 197
Cdd:cd03263 86 LFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLD 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 198 PLIRTEMQDQLLELQAtlSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPD 251
Cdd:cd03263 166 PASRRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQ 217
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
40-248 |
2.65e-41 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 141.26 E-value: 2.65e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 40 GCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNdvirldanGLRELRRYKVSMVFQNFGLL 119
Cdd:cd03269 11 GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGK--------PLDIAARNRIGYLPEERGLY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 120 PHQTVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPL 199
Cdd:cd03269 83 PKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPV 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1528361663 200 IRTEMQDQLLELQATlSKTIVFITHDLDEALRIGDRIAILRDGTLVQVG 248
Cdd:cd03269 163 NVELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
45-194 |
2.91e-41 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 139.32 E-value: 2.91e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDanglRELRRYKVSMVFQNFGLLPHQTV 124
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDE----RKSLRKEIGYVFQDPQLFPRLTV 76
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 125 LDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEH----YPDELSGGMRQRVGLARALAADTDVLLMDEAFS 194
Cdd:pfam00005 77 RENLRLGLLLKGLSKREKDARAEEALEKLGLGDLADRpvgeRPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
45-258 |
3.36e-41 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 142.49 E-value: 3.36e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLvrhFN---RLIEPTAGEIVIDGNDVIRLDAnglRELRRYKVSMVFQNFGLLPH 121
Cdd:COG0411 20 VDDVSLEVERGEIVGLIGPNGAGKTTL---FNlitGFYRPTSGRILFDGRDITGLPP---HRIARLGIARTFQNPRLFPE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 122 QTVLDN---AAYALRTRG------------ENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDV 186
Cdd:COG0411 94 LTVLENvlvAAHARLGRGllaallrlprarREEREARERAEELLERVGLADRADEPAGNLSYGQQRRLEIARALATEPKL 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1528361663 187 LLMDEAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPA 258
Cdd:COG0411 174 LLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGTPAEVRADPR 245
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
45-269 |
4.07e-41 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 141.97 E-value: 4.07e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIE--PTA---GEIVIDGNDVIRLDangLRELRRyKVSMVFQNFGLL 119
Cdd:PRK14247 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIElyPEArvsGEVYLDGQDIFKMD---VIELRR-RVQMVFQIPNPI 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 120 PHQTVLDNAAYAL---------RTRGENRPDALDAARNW-LTKVGLDGYGehypDELSGGMRQRVGLARALAADTDVLLM 189
Cdd:PRK14247 95 PNLSIFENVALGLklnrlvkskKELQERVRWALEKAQLWdEVKDRLDAPA----GKLSGGQQQRLCIARALAFQPEVLLA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 190 DEAFSALDPLIRTEMQDQLLELQATLskTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFVEKR 269
Cdd:PRK14247 171 DEPTANLDPENTAKIESLFLELKKDM--TIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPRHELTEKYVTGR 248
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
44-257 |
4.78e-41 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 143.05 E-value: 4.78e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 44 GLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDAN-GLRELRRyKVSMVFQnF--GLLP 120
Cdd:PRK13641 22 GLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNkNLKKLRK-KVSLVFQ-FpeAQLF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 121 HQTVLDNAAYALRTRGENRPDALDAARNWLTKVGL-DGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPL 199
Cdd:PRK13641 100 ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLsEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361663 200 IRTEMQDQLLELQATlSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRP 257
Cdd:PRK13641 180 GRKEMMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDK 236
|
|
| LolD_lipo_ex |
TIGR02211 |
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ... |
45-245 |
1.02e-40 |
|
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 131266 [Multi-domain] Cd Length: 221 Bit Score: 140.18 E-value: 1.02e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRYKVSMVFQNFGLLPHQTV 124
Cdd:TIGR02211 21 LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTA 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEM 204
Cdd:TIGR02211 101 LENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKII 180
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1528361663 205 QDQLLELQATLSKTIVFITHDLDEALRIgDRIAILRDGTLV 245
Cdd:TIGR02211 181 FDLMLELNRELNTSFLVVTHDLELAKKL-DRVLEMKDGQLF 220
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
45-256 |
1.45e-40 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 148.44 E-value: 1.45e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDangLRELRRyKVSMVFQNFGLLpHQTV 124
Cdd:COG2274 491 LDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQID---PASLRR-QIGVVLQDVFLF-SGTI 565
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYAlrtrgenRPDA-LDAARNWLTKVGLDGYGEHYPD-----------ELSGGMRQRVGLARALAADTDVLLMDEA 192
Cdd:COG2274 566 RENITLG-------DPDAtDEEIIEAARLAGLHDFIEALPMgydtvvgeggsNLSGGQRQRLAIARALLRNPRILILDEA 638
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 193 FSALDPLIRTEMQDQLLELQAtlSKTIVFITHDLdEALRIGDRIAILRDGTLVQVGTPDDILSR 256
Cdd:COG2274 639 TSALDAETEAIILENLRRLLK--GRTVIIIAHRL-STIRLADRIIVLDKGRIVEDGTHEELLAR 699
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
46-266 |
5.06e-40 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 142.48 E-value: 5.06e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 46 NDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDG---NDVirldanglrELRRYKVSMVFQNFGLLPHQ 122
Cdd:PRK11000 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEkrmNDV---------PPAERGVGMVFQSYALYPHL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRT 202
Cdd:PRK11000 91 SVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRV 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 203 EMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFV 266
Cdd:PRK11000 171 QMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRFVAGFI 234
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
43-253 |
8.09e-40 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 139.80 E-value: 8.09e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 43 VGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANgLRELRRyKVSMVFQnfglLP-H 121
Cdd:PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVK-LSDIRK-KVGLVFQ----YPeY 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 122 Q----TVLDNAAYALRTRGENRPDALDAARNWLTKVGLD--GYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSA 195
Cdd:PRK13637 95 QlfeeTIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDyeDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAG 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361663 196 LDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDI 253
Cdd:PRK13637 175 LDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
26-269 |
8.40e-40 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 139.03 E-value: 8.40e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 26 LRAGKRKADVLSETGCNVGLND------VSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVID------GNDV 93
Cdd:PRK14246 1 MEAGKSAEDVFNISRLYLYINDkailkdITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDgkvlyfGKDI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 94 IRLDANGLRElrryKVSMVFQNFGLLPHQTVLDNAAYALRTRG-ENRPDALDAARNWLTKVGLdgYGEHY------PDEL 166
Cdd:PRK14246 81 FQIDAIKLRK----EVGMVFQQPNPFPHLSIYDNIAYPLKSHGiKEKREIKKIVEECLRKVGL--WKEVYdrlnspASQL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 167 SGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQDQLLELQATLskTIVFITHDLDEALRIGDRIAILRDGTLVQ 246
Cdd:PRK14246 155 SGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEI--AIVIVSHNPQQVARVADYVAFLYNGELVE 232
|
250 260
....*....|....*....|...
gi 1528361663 247 VGTPDDILSRPADEYVRRFVEKR 269
Cdd:PRK14246 233 WGSSNEIFTSPKNELTEKYVIGR 255
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
45-242 |
1.13e-39 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 135.59 E-value: 1.13e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDangLRELRRyKVSMVFQNFGLLpHQTV 124
Cdd:cd03228 18 LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD---LESLRK-NIAYVPQDPFLF-SGTI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAayalrtrgenrpdaldaarnwltkvgldgygehypdeLSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEM 204
Cdd:cd03228 93 RENI-------------------------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALI 135
|
170 180 190
....*....|....*....|....*....|....*...
gi 1528361663 205 QDQLLELQATlsKTIVFITHDLdEALRIGDRIAILRDG 242
Cdd:cd03228 136 LEALRALAKG--KTVIVIAHRL-STIRDADRIIVLDDG 170
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
45-230 |
1.31e-39 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 136.84 E-value: 1.31e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEP---TAGEIVIDGNDVIRLDAnglrELRRykVSMVFQNFGLLPH 121
Cdd:COG4136 17 LAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPafsASGEVLLNGRRLTALPA----EQRR--IGILFQDDLLFPH 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 122 QTVLDNAAYAL--RTRGENRPDALDAArnwLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPL 199
Cdd:COG4136 91 LSVGENLAFALppTIGRAQRRARVEQA---LEEAGLAGFADRDPATLSGGQRARVALLRALLAEPRALLLDEPFSKLDAA 167
|
170 180 190
....*....|....*....|....*....|.
gi 1528361663 200 IRTEMQDQLLELQATLSKTIVFITHDLDEAL 230
Cdd:COG4136 168 LRAQFREFVFEQIRQRGIPALLVTHDEEDAP 198
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
47-267 |
2.83e-39 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 137.97 E-value: 2.83e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 47 DVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRyKVSMVFQNFGLLPHQTVLD 126
Cdd:PRK11831 25 NISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK-RMSMLFQSGALFTDMNVFD 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 127 NAAYALRtRGENRPDAL--DAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEM 204
Cdd:PRK11831 104 NVAYPLR-EHTQLPAPLlhSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVL 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1528361663 205 QDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPaDEYVRRFVE 267
Cdd:PRK11831 183 VKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANP-DPRVRQFLD 244
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
45-263 |
3.14e-39 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 139.33 E-value: 3.14e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNrLIE-PTAGEIVIDGNDVIRLDANGLRELRRyKVSMVFQN-FGLL-PH 121
Cdd:PRK11308 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLT-MIEtPTGGELYYQGQDLLKADPEAQKLLRQ-KIQIVFQNpYGSLnPR 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 122 QTVLDNAAYALR-----TRGENRPDALDAarnwLTKVGLDGygEH---YPDELSGGMRQRVGLARALAADTDVLLMDEAF 193
Cdd:PRK11308 109 KKVGQILEEPLLintslSAAERREKALAM----MAKVGLRP--EHydrYPHMFSGGQRQRIAIARALMLDPDVVVADEPV 182
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 194 SALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVR 263
Cdd:PRK11308 183 SALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHPYTQ 252
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
47-264 |
3.83e-39 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 139.86 E-value: 3.83e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 47 DVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRYKVSMVFQNFGLLPHQTVLD 126
Cdd:TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 127 NAAYAL-RTRGENRPDALDAARNWLtkvGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQ 205
Cdd:TIGR02142 95 NLRYGMkRARPSERRISFERVIELL---GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEIL 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1528361663 206 DQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRR 264
Cdd:TIGR02142 172 PYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLAR 230
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
43-244 |
1.04e-38 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 134.84 E-value: 1.04e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 43 VGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRyKVSMVFQNFGLLPHQ 122
Cdd:cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR-KIGVVFQDFRLLPDR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRT 202
Cdd:cd03292 94 NVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTW 173
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1528361663 203 EMQDqLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTL 244
Cdd:cd03292 174 EIMN-LLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
45-267 |
1.10e-38 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 142.21 E-value: 1.10e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELrrykVSMVFQNFGLLpHQTV 124
Cdd:COG4987 351 LDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDDLRRR----IAVVPQRPHLF-DTTL 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYAlrtrgenRPDALDAA-RNWLTKVGLDGYGEHYPD-----------ELSGGMRQRVGLARALAADTDVLLMDEA 192
Cdd:COG4987 426 RENLRLA-------RPDATDEElWAALERVGLGDWLAALPDgldtwlgeggrRLSGGERRRLALARALLRDAPILLLDEP 498
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1528361663 193 FSALDPLirTEmqDQLLE--LQATLSKTIVFITHDLdEALRIGDRIAILRDGTLVQVGTPDDILSRPadEYVRRFVE 267
Cdd:COG4987 499 TEGLDAA--TE--QALLAdlLEALAGRTVLLITHRL-AGLERMDRILVLEDGRIVEQGTHEELLAQN--GRYRQLYQ 568
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
45-256 |
5.43e-38 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 140.28 E-value: 5.43e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELrrykVSMVFQNfGLLPHQTV 124
Cdd:COG4988 353 LDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASWRRQ----IAWVPQN-PYLFAGTI 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYAlrtrgenRPDALDAA-RNWLTKVGLDGYGEHYPDE-----------LSGGMRQRVGLARALAADTDVLLMDEA 192
Cdd:COG4988 428 RENLRLG-------RPDASDEElEAALEAAGLDEFVAALPDGldtplgeggrgLSGGQAQRLALARALLRDAPLLLLDEP 500
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 193 FSALDPLIRTEMQDQLLELQATlsKTIVFITHDLdEALRIGDRIAILRDGTLVQVGTPDDILSR 256
Cdd:COG4988 501 TAHLDAETEAEILQALRRLAKG--RTVILITHRL-ALLAQADRILVLDDGRIVEQGTHEELLAK 561
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
45-259 |
5.07e-37 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 132.16 E-value: 5.07e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNdviRLDANGLRELRRyKVSMVFQNfgllPHQ-- 122
Cdd:PRK13650 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGD---LLTEENVWDIRH-KIGMVFQN----PDNqf 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 ---TVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPL 199
Cdd:PRK13650 95 vgaTVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPE 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 200 IRTEMQDQLLELQATLSKTIVFITHDLDEaLRIGDRIAILRDGTLVQVGTPDDILSRPAD 259
Cdd:PRK13650 175 GRLELIKTIKGIRDDYQMTVISITHDLDE-VALSDRVLVMKNGQVESTSTPRELFSRGND 233
|
|
| ABC_ATP_SaoA |
NF040729 |
ABC transporter ATP-binding protein SaoA; SaoA is the ATP-binding subunit of an ABC ... |
45-259 |
6.25e-37 |
|
ABC transporter ATP-binding protein SaoA; SaoA is the ATP-binding subunit of an ABC transporter in which both the permease subunit SaoP, and the substrate-binding protein SaoB, are nearly always selenoproteins that were unrecognized as such until recently (2022). The SAO system is found in Clostridium difficile and various other anaerobic heterotrophs.
Pssm-ID: 468693 [Multi-domain] Cd Length: 248 Bit Score: 131.02 E-value: 6.25e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANglrelRRYkvsmVFQNFGLLPHQTV 124
Cdd:NF040729 21 LKDISFDVEEGEFVSLLGPSGCGKTTLLTIIAGFQNATSGEILVNGNEVTKPGPD-----RGF----VFQNYALFPWMTV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEM 204
Cdd:NF040729 92 KENIEYPMKQQKMPKQEREKRLNELLEMAQLTGKENLYPHQISGGMKQRTAVIRALACKPEVLLMDEPLGAVDFQMRQIL 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1528361663 205 QDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRD--GTLVQVGTPDdiLSRPAD 259
Cdd:NF040729 172 QEELESIWLKDKTTVLMVTHDVDEAVYLSDRVIVMSRdkGKILEDLKID--LPRPRN 226
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
45-255 |
6.74e-37 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 136.86 E-value: 6.74e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEI-VIDGNDVIRLDANGLRELRRYK--VSMVFQNFGLLPH 121
Cdd:TIGR03269 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVnVRVGDEWVDMTKPGPDGRGRAKryIGILHQEYDLYPH 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 122 QTVLDNAAYALrtrGENRPD--ALDAARNWLTKVGLD-----GYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFS 194
Cdd:TIGR03269 380 RTVLDNLTEAI---GLELPDelARMKAVITLKMVGFDeekaeEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTG 456
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1528361663 195 ALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILS 255
Cdd:TIGR03269 457 TMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
45-258 |
6.83e-37 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 130.98 E-value: 6.83e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVirldanglrELRRYKVSMVFQNFGLLPHQ-- 122
Cdd:COG1121 22 LEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPP---------RRARRRIGYVPQRAEVDWDFpi 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TVLDNAAYAL--RTRGENRPDALD--AARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDP 198
Cdd:COG1121 93 TVRDVVLMGRygRRGLFRRPSRADreAVDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQDPDLLLLDEPFAGVDA 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1528361663 199 lirtEMQDQLLELQATLS---KTIVFITHDLDEALRIGDRIAILrDGTLVQVGTPDDILSRPA 258
Cdd:COG1121 173 ----ATEEALYELLRELRregKTILVVTHDLGAVREYFDRVLLL-NRGLVAHGPPEEVLTPEN 230
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
43-255 |
1.33e-36 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 130.98 E-value: 1.33e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 43 VGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVirLDANGLRELRRyKVSMVFQN------- 115
Cdd:PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDT--SDEENLWDIRN-KAGMVFQNpdnqiva 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 116 --------FGllPHQtvLDNAAYALRTRGENRpdaldaarnwLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVL 187
Cdd:PRK13633 101 tiveedvaFG--PEN--LGIPPEEIRERVDES----------LKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECI 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361663 188 LMDEAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRiGDRIAILRDGTLVQVGTPDDILS 255
Cdd:PRK13633 167 IFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFK 233
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
45-257 |
1.53e-36 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 130.18 E-value: 1.53e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIvidgndvirLDANGLRELRRYKVSMVFQNFGLLPHQTV 124
Cdd:PRK11247 28 LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL---------LAGTAPLAEAREDTRLMFQDARLLPWKKV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRtrGENRPDALDAarnwLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEM 204
Cdd:PRK11247 99 IDNVGLGLK--GQWRDAALQA----LAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEM 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 205 QDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGtlvQVGTPDDI-LSRP 257
Cdd:PRK11247 173 QDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEG---KIGLDLTVdLPRP 223
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
45-257 |
2.06e-36 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 130.69 E-value: 2.06e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGE---IVIDGndvIRLDANGLRELRRyKVSMVFQNfgllPH 121
Cdd:PRK13640 23 LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPnskITVDG---ITLTAKTVWDIRE-KVGIVFQN----PD 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 122 Q-----TVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSAL 196
Cdd:PRK13640 95 NqfvgaTVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSML 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1528361663 197 DPLIRTEMQDQLLELQATLSKTIVFITHDLDEAlRIGDRIAILRDGTLVQVGTPDDILSRP 257
Cdd:PRK13640 175 DPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIFSKV 234
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
45-253 |
2.30e-36 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 134.76 E-value: 2.30e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDAnglRELRRYKVSMVFQNFGLLPHQTV 124
Cdd:COG1129 20 LDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSP---RDAQAAGIAIIHQELNLVPNLSV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDN--AAYALRTRGE-NRPDALDAARNWLTKVGLDgygEHyPD----ELSGGMRQRVGLARALAADTDVLLMDEAFSALD 197
Cdd:COG1129 97 AENifLGREPRRGGLiDWRAMRRRARELLARLGLD---ID-PDtpvgDLSVAQQQLVEIARALSRDARVLILDEPTASLT 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1528361663 198 PlirTEmQDQLLELQATLSK---TIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDI 253
Cdd:COG1129 173 E---RE-VERLFRIIRRLKAqgvAIIYISHRLDEVFEIADRVTVLRDGRLVGTGPVAEL 227
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
49-260 |
3.43e-36 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 128.55 E-value: 3.43e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 49 SLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANglrelrRYKVSMVFQNFGLLPHQTVLDNA 128
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS------RRPVSMLFQENNLFSHLTVAQNI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 129 AY----ALRTRGENRPDALDAARnwltKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEM 204
Cdd:PRK10771 93 GLglnpGLKLNAAQREKLHAIAR----QMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEM 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1528361663 205 QDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADE 260
Cdd:PRK10771 169 LTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKASA 224
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
45-246 |
3.66e-36 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 128.78 E-value: 3.66e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRYKVSMVFQNFGLLPHQTV 124
Cdd:PRK11629 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEM 204
Cdd:PRK11629 105 LENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSI 184
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1528361663 205 QDQLLELQATLSKTIVFITHDLDEALRIGDRIAiLRDGTLVQ 246
Cdd:PRK11629 185 FQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLE-MRDGRLTA 225
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
45-255 |
1.12e-35 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 128.33 E-value: 1.12e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNdviRLDANGLRELRRYkVSMVFQNfgllPHQ-- 122
Cdd:PRK13648 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQ---AITDDNFEKLRKH-IGIVFQN----PDNqf 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 ---TVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPL 199
Cdd:PRK13648 97 vgsIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPD 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1528361663 200 IRTEMQDQLLELQATLSKTIVFITHDLDEALRiGDRIAILRDGTLVQVGTPDDILS 255
Cdd:PRK13648 177 ARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFD 231
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
45-255 |
2.26e-35 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 128.67 E-value: 2.26e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGL---------------------RE 103
Cdd:PRK13651 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEkekvleklviqktrfkkikkiKE 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 104 LRRyKVSMVFQnFG--LLPHQTVLDNAAYALRTRGENRPDALDAARNWLTKVGLD-GYGEHYPDELSGGMRQRVGLARAL 180
Cdd:PRK13651 103 IRR-RVGVVFQ-FAeyQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDeSYLQRSPFELSGGQKRRVALAGIL 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1528361663 181 AADTDVLLMDEAFSALDPLIRTEMQDQLLELQATlSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILS 255
Cdd:PRK13651 181 AMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ-GKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILS 254
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
46-263 |
2.34e-35 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 129.06 E-value: 2.34e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 46 NDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRyKVSMVFQN--FGLLPHQT 123
Cdd:PRK15079 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRS-DIQMIFQDplASLNPRMT 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 124 VLDNAAYALRTRGEN--RPDALDAARNWLTKVGL-DGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLI 200
Cdd:PRK15079 117 IGEIIAEPLRTYHPKlsRQEVKDRVKAMMLKVGLlPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSI 196
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1528361663 201 RTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVR 263
Cdd:PRK15079 197 QAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTK 259
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
4-245 |
3.92e-35 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 123.69 E-value: 3.92e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 4 IDVRHVYKLFGPEAAhprvldllragkrkadvlsetgcnvgLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTA 83
Cdd:cd03216 1 LELRGITKRFGGVKA--------------------------LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS 54
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 84 GEIVIDGNDVirlDANGLRELRRYKVSMVFQnfgllphqtvldnaayalrtrgenrpdaldaarnwltkvgldgygehyp 163
Cdd:cd03216 55 GEILVDGKEV---SFASPRDARRAGIAMVYQ------------------------------------------------- 82
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 164 deLSGGMRQRVGLARALAADTDVLLMDEAFSALDPlirTEmQDQLLELQATLSK---TIVFITHDLDEALRIGDRIAILR 240
Cdd:cd03216 83 --LSVGERQMVEIARALARNARLLILDEPTAALTP---AE-VERLFKVIRRLRAqgvAVIFISHRLDEVFEIADRVTVLR 156
|
....*
gi 1528361663 241 DGTLV 245
Cdd:cd03216 157 DGRVV 161
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
43-257 |
4.36e-35 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 127.12 E-value: 4.36e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 43 VGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDvIRLDANGLRELRRyKVSMVFQN-----FG 117
Cdd:PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEP-IKYDKKSLLEVRK-TVGIVFQNpddqlFA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 118 llphQTVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALD 197
Cdd:PRK13639 94 ----PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLD 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1528361663 198 PLIRTemqdQLLELQATLSK---TIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRP 257
Cdd:PRK13639 170 PMGAS----QIMKLLYDLNKegiTIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDI 228
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
43-258 |
5.49e-35 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 128.04 E-value: 5.49e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 43 VGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVI-------DGNDVIRLDANGLRELRRYK-----VS 110
Cdd:PRK13631 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVgdiyigdKKNNHELITNPYSKKIKNFKelrrrVS 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 111 MVFQ--NFGLLpHQTVLDNAAYALRTRGENRPDALDAARNWLTKVGLD-GYGEHYPDELSGGMRQRVGLARALAADTDVL 187
Cdd:PRK13631 120 MVFQfpEYQLF-KDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDdSYLERSPFGLSGGQKRRVAIAGILAIQPEIL 198
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1528361663 188 LMDEAFSALDPLIRTEMQDQLLELQATlSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPA 258
Cdd:PRK13631 199 IFDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQH 268
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
45-252 |
2.29e-34 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 129.38 E-value: 2.29e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVirlDANGLRELRRYKVSMVFQNFGLLPHQTV 124
Cdd:COG3845 21 NDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPV---RIRSPRDAIALGIGMVHQHFMLVPNLTV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRGENRPDaLDAARNWLTKVGldgygEHY-----PD----ELSGGMRQRVGLARALAADTDVLLMDEAFSA 195
Cdd:COG3845 98 AENIVLGLEPTKGGRLD-RKAARARIRELS-----ERYgldvdPDakveDLSVGEQQRVEILKALYRGARILILDEPTAV 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1528361663 196 LDPlirtemQ--DQLLELQATLS---KTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDD 252
Cdd:COG3845 172 LTP------QeaDELFEILRRLAaegKSIIFITHKLREVMAIADRVTVLRRGKVVGTVDTAE 227
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
40-253 |
3.90e-34 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 122.86 E-value: 3.90e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 40 GCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRlDAnglRELRRyKVSMVFQNFGLL 119
Cdd:cd03265 11 GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EP---REVRR-RIGIVFQDLSVD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 120 PHQTVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPL 199
Cdd:cd03265 86 DELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQ 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 200 IRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDI 253
Cdd:cd03265 166 TRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
45-271 |
4.67e-34 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 123.73 E-value: 4.67e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRL--IEP---TAGEIVIDGNDVI--RLDANGLRElrryKVSMVFQNFG 117
Cdd:PRK14239 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMndLNPevtITGSIVYNGHNIYspRTDTVDLRK----EIGMVFQQPN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 118 LLPhQTVLDNAAYALRTRGENRPDALDAA-RNWLTKVGL-DGYGEHYPDE---LSGGMRQRVGLARALAADTDVLLMDEA 192
Cdd:PRK14239 97 PFP-MSIYENVVYGLRLKGIKDKQVLDEAvEKSLKGASIwDEVKDRLHDSalgLSGGQQQRVCIARVLATSPKIILLDEP 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1528361663 193 FSALDPLIRTEMQDQLLELQATLskTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFVEKRTG 271
Cdd:PRK14239 176 TSALDPISAGKIEETLLGLKDDY--TMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNPKHKETEDYISGKFG 252
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
45-248 |
9.76e-34 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 121.87 E-value: 9.76e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVirldanglrELRRYKVSMVFQNFGLLPHQ-- 122
Cdd:cd03235 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPL---------EKERKRIGYVPQRRSIDRDFpi 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TVLDNAAYAL--RTRGENRPDALD--AARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDP 198
Cdd:cd03235 86 SVRDVVLMGLygHKGLFRRLSKADkaKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDP 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1528361663 199 lirtEMQDQLLELQATLS---KTIVFITHDLDEALRIGDRIAILrDGTLVQVG 248
Cdd:cd03235 166 ----KTQEDIYELLRELRregMTILVVTHDLGLVLEYFDRVLLL-NRTVVASG 213
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
45-258 |
1.34e-33 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 122.87 E-value: 1.34e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRyKVSMVFQN-FGLL-PHQ 122
Cdd:PRK10419 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRR-DIQMVFQDsISAVnPRK 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TVLDNAAYALR-TRGENRPDALDAARNWLTKVGLD-GYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLI 200
Cdd:PRK10419 107 TVREIIREPLRhLLSLDKAERLARASEMLRAVDLDdSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVL 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 201 RTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLV--QVGTPDDILSRPA 258
Cdd:PRK10419 187 QAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVetQPVGDKLTFSSPA 246
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
47-266 |
1.35e-33 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 128.43 E-value: 1.35e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 47 DVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRyKVSMVFQN--FGLLPHQTV 124
Cdd:PRK10261 342 KVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRR-DIQFIFQDpyASLDPRQTV 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRGENRPDALDAARNWL-TKVGLdgYGEH---YPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLI 200
Cdd:PRK10261 421 GDSIMEPLRVHGLLPGKAAAARVAWLlERVGL--LPEHawrYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSI 498
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1528361663 201 RTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFV 266
Cdd:PRK10261 499 RGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLM 564
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
45-256 |
2.46e-33 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 121.18 E-value: 2.46e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRElrryKVSMVFQNFGLLpHQTV 124
Cdd:cd03253 17 LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRR----AIGVVPQDTVLF-NDTI 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYAlrtrgenRPDALD-----AAR-------------NWLTKVGLDGYgehypdELSGGMRQRVGLARALAADTDV 186
Cdd:cd03253 92 GYNIRYG-------RPDATDeevieAAKaaqihdkimrfpdGYDTIVGERGL------KLSGGEKQRVAIARAILKNPPI 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 187 LLMDEAFSALDPLIRTEMQDQLLELQAtlSKTIVFITHDLDEALRiGDRIAILRDGTLVQVGTPDDILSR 256
Cdd:cd03253 159 LLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELLAK 225
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
45-245 |
4.93e-33 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 119.67 E-value: 4.93e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDanglrelRRYKVSMVFQNFGllpHQTV 124
Cdd:cd03226 16 LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKE-------RRKSIGYVMQDVD---YQLF 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEM 204
Cdd:cd03226 86 TDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERV 165
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1528361663 205 QDQLLELQATlSKTIVFITHDLDEALRIGDRIAILRDGTLV 245
Cdd:cd03226 166 GELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
4-248 |
6.82e-33 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 119.78 E-value: 6.82e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 4 IDVRHVYKLFGPEAAHPRVLDllragkrkadvlsetgcnvglnDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTA 83
Cdd:cd03266 2 ITADALTKRFRDVKKTVQAVD----------------------GVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 84 GEIVIDGNDVIRldanGLRELRRyKVSMVFQNFGLLPHQTVLDNAAYALRTRGENRpDALDAARNWLTKV-GLDGYGEHY 162
Cdd:cd03266 60 GFATVDGFDVVK----EPAEARR-RLGFVSDSTGLYDRLTARENLEYFAGLYGLKG-DELTARLEELADRlGMEELLDRR 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 163 PDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQDQLLELQAtLSKTIVFITHDLDEALRIGDRIAILRDG 242
Cdd:cd03266 134 VGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIMQEVERLCDRVVVLHRG 212
|
....*.
gi 1528361663 243 TLVQVG 248
Cdd:cd03266 213 RVVYEG 218
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
44-254 |
1.23e-32 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 120.99 E-value: 1.23e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 44 GLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIdgNDVIRLDANGLRELR--RYKVSMVFQ-NFGLLP 120
Cdd:PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTV--GDIVVSSTSKQKEIKpvRKKVGVVFQfPESQLF 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 121 HQTVLDNAAYALRTRGENRPDALDAARNWLTKVGLDG-YGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPL 199
Cdd:PRK13643 99 EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADeFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1528361663 200 IRTEMQdQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDIL 254
Cdd:PRK13643 179 ARIEMM-QLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVF 232
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
45-255 |
1.62e-32 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 119.73 E-value: 1.62e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDAnglRELRRYkvsmvfqnFGLLPHQ-- 122
Cdd:PRK11231 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSS---RQLARR--------LALLPQHhl 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 -----TVLDNAAYA----LRTRGenRPDALDAAR-NW-LTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDE 191
Cdd:PRK11231 87 tpegiTVRELVAYGrspwLSLWG--RLSAEDNARvNQaMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDE 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 192 AFSALDPLIRTEMQDQLLELQATlSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILS 255
Cdd:PRK11231 165 PTTYLDINHQVELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
45-256 |
1.79e-32 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 118.87 E-value: 1.79e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRElrryKVSMVFQNFgLLPHQTV 124
Cdd:cd03251 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR----QIGLVSQDV-FLFNDTV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYAlrTRGENRPDALDAARN-------------WLTKVGLDGYgehypdELSGGMRQRVGLARALAADTDVLLMDE 191
Cdd:cd03251 93 AENIAYG--RPGATREEVEEAARAanahefimelpegYDTVIGERGV------KLSGGQRQRIAIARALLKDPPILILDE 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1528361663 192 AFSALDplIRTEM--QDQLLELQAtlSKTIVFITHDLdEALRIGDRIAILRDGTLVQVGTPDDILSR 256
Cdd:cd03251 165 ATSALD--TESERlvQAALERLMK--NRTTFVIAHRL-STIENADRIVVLEDGKIVERGTHEELLAQ 226
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
45-245 |
1.87e-32 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 125.22 E-value: 1.87e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRYKVSMVFQNFGLLPHQTV 124
Cdd:PRK10535 24 LKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTA 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDN----AAYAlrtrGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLI 200
Cdd:PRK10535 104 AQNvevpAVYA----GLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1528361663 201 RTEMQDQLLELQATlSKTIVFITHDLDEALRiGDRIAILRDGTLV 245
Cdd:PRK10535 180 GEEVMAILHQLRDR-GHTVIIVTHDPQVAAQ-AERVIEIRDGEIV 222
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
45-255 |
3.03e-32 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 117.92 E-value: 3.03e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDAnglRELRRYKVSMVFQNFGLLPHQTV 124
Cdd:cd03224 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPP---HERARAGIGYVPEGRRIFPELTV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDN---AAYALRtrGENRPDALDA--------ARNWLTKVGldgygehypdELSGGMRQRVGLARALAADTDVLLMDEAF 193
Cdd:cd03224 93 EENlllGAYARR--RAKRKARLERvyelfprlKERRKQLAG----------TLSGGEQQMLAIARALMSRPKLLLLDEPS 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1528361663 194 SALDPLIRTEMQDQLLELQATlSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILS 255
Cdd:cd03224 161 EGLAPKIVEEIFEAIRELRDE-GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
43-248 |
4.35e-32 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 117.29 E-value: 4.35e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 43 VGLNDVSLGIASGeIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRldanGLRELRRyKVSMVFQNFGLLPHQ 122
Cdd:cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLK----QPQKLRR-RIGYLPQEFGVYPNF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRT 202
Cdd:cd03264 88 TVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERI 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1528361663 203 EMQDQLLELQATlsKTIVFITHDLDEALRIGDRIAILRDGTLVQVG 248
Cdd:cd03264 168 RFRNLLSELGED--RIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
45-262 |
5.44e-32 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 118.94 E-value: 5.44e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVirLDANGLRELRRYkVSMVFQNfgllPH--- 121
Cdd:PRK13644 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDT--GDFSKLQGIRKL-VGIVFQN----PEtqf 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 122 --QTVLDNAAYA----------LRTRgenrpdaLDAArnwLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLM 189
Cdd:PRK13644 91 vgRTVEEDLAFGpenlclppieIRKR-------VDRA---LAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIF 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1528361663 190 DEAFSALDPLIRTEMQDQLLELQATlSKTIVFITHDLDEaLRIGDRIAILRDGTLVQVGTPDDILSRPADEYV 262
Cdd:PRK13644 161 DEVTSMLDPDSGIAVLERIKKLHEK-GKTIVYITHNLEE-LHDADRIIVMDRGKIVLEGEPENVLSDVSLQTL 231
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
45-256 |
1.04e-31 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 122.90 E-value: 1.04e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDangLRELRRyKVSMVFQNFGLLpHQTV 124
Cdd:TIGR02203 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT---LASLRR-QVALVSQDVVLF-NDTI 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYAlRTRGENRPDALDAARNWLTKVGLDGY--GEHYP-----DELSGGMRQRVGLARALAADTDVLLMDEAFSALD 197
Cdd:TIGR02203 423 ANNIAYG-RTEQADRAEIERALAAAYAQDFVDKLplGLDTPigengVLLSGGQRQRLAIARALLKDAPILILDEATSALD 501
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1528361663 198 PLIRTEMQDQLLELQAtlSKTIVFITHDLdEALRIGDRIAILRDGTLVQVGTPDDILSR 256
Cdd:TIGR02203 502 NESERLVQAALERLMQ--GRTTLVIAHRL-STIEKADRIVVMDDGRIVERGTHNELLAR 557
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
45-256 |
1.19e-31 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 116.94 E-value: 1.19e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRElrryKVSMVFQNFGLLPhQTV 124
Cdd:cd03254 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRS----MIGVVLQDTFLFS-GTI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYalrtrgeNRPDALDAARNWLTK-VGLDGYGEHYPD-----------ELSGGMRQRVGLARALAADTDVLLMDEA 192
Cdd:cd03254 94 MENIRL-------GRPNATDEEVIEAAKeAGAHDFIMKLPNgydtvlgenggNLSQGERQLLAIARAMLRDPKILILDEA 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 193 FSALDPLIRTEMQDQLLELQAtlSKTIVFITHDLDeALRIGDRIAILRDGTLVQVGTPDDILSR 256
Cdd:cd03254 167 TSNIDTETEKLIQEALEKLMK--GRTSIIIAHRLS-TIKNADKILVLDDGKIIEEGTHDELLAK 227
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
45-257 |
1.33e-31 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 117.52 E-value: 1.33e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRrykvsmvfqnfGLLPHQ-- 122
Cdd:COG4559 17 LDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWELARRR-----------AVLPQHss 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 -----TVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGE-HYPdELSGGMRQRVGLARALA---ADTD----VLLM 189
Cdd:COG4559 86 lafpfTVEEVVALGRAPHGSSAAQDRQIVREALALVGLAHLAGrSYQ-TLSGGEQQRVQLARVLAqlwEPVDggprWLFL 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1528361663 190 DEAFSALDPLirteMQDQLLELQATLSK---TIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRP 257
Cdd:COG4559 165 DEPTSALDLA----HQHAVLRLARQLARrggGVVAVLHDLNLAAQYADRILLLHQGRLVAQGTPEEVLTDE 231
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
45-271 |
1.64e-31 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 117.45 E-value: 1.64e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEpTAGEIVIDG-----NDVIRLDANGLRELRRyKVSMVFQNFGLL 119
Cdd:PRK14258 23 LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGrveffNQNIYERRVNLNRLRR-QVSMVHPKPNLF 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 120 PhQTVLDNAAYALRTRGEnRP---------DALDAARNW------LTKVGLDgygehypdeLSGGMRQRVGLARALAADT 184
Cdd:PRK14258 101 P-MSVYDNVAYGVKIVGW-RPkleiddiveSALKDADLWdeikhkIHKSALD---------LSGGQQQRLCIARALAVKP 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 185 DVLLMDEAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAIL-----RDGTLVQVGTPDDILSRPAD 259
Cdd:PRK14258 170 KVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFkgnenRIGQLVEFGLTKKIFNSPHD 249
|
250
....*....|..
gi 1528361663 260 EYVRRFVEKRTG 271
Cdd:PRK14258 250 SRTREYVLSRLG 261
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
45-259 |
2.40e-31 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 117.50 E-value: 2.40e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNdviRLDANGLRELRRyKVSMVFQN-FGLLPHQT 123
Cdd:PRK13642 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGE---LLTAENVWNLRR-KIGMVFQNpDNQFVGAT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 124 VLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTE 203
Cdd:PRK13642 99 VEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQE 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1528361663 204 MQDQLLELQATLSKTIVFITHDLDEALRiGDRIAILRDGTLVQVGTPDDILSRPAD 259
Cdd:PRK13642 179 IMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSELFATSED 233
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
45-235 |
2.44e-31 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 115.27 E-value: 2.44e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLdanglRELRRYKVSMVFQNFGLLPHQTV 124
Cdd:COG4133 18 FSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDA-----REDYRRRLAYLGHADGLKPELTV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRGENRPDalDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDplirTEM 204
Cdd:COG4133 93 RENLRFWAALYGLRADR--EAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEPFTALD----AAG 166
|
170 180 190
....*....|....*....|....*....|....*....
gi 1528361663 205 QDQLLEL-QATLSK--TIVFITHDLDEA-----LRIGDR 235
Cdd:COG4133 167 VALLAELiAAHLARggAVLLTTHQPLELaaarvLDLGDF 205
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
43-265 |
6.43e-31 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 116.42 E-value: 6.43e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 43 VGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVI-RLDANGLRELRRyKVSMVFQnfglLPH 121
Cdd:PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITIThKTKDKYIRPVRK-RIGMVFQ----FPE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 122 -QTVLDNAAYALRTRGENRPDALDAARNWLTKVGLD-GYG----EHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSA 195
Cdd:PRK13646 96 sQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDlGFSrdvmSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAG 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 196 LDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRpaDEYVRRF 265
Cdd:PRK13646 176 LDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD--KKKLADW 243
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
45-244 |
1.11e-30 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 114.11 E-value: 1.11e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRYKVSMVFQNFGLLPHQTV 124
Cdd:PRK10584 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNA 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEM 204
Cdd:PRK10584 106 LENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKI 185
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1528361663 205 QDQLLELQATLSKTIVFITHDLDEALRIGDRIAiLRDGTL 244
Cdd:PRK10584 186 ADLLFSLNREHGTTLILVTHDLQLAARCDRRLR-LVNGQL 224
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
45-256 |
1.60e-30 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 114.12 E-value: 1.60e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRElrryKVSMVFQNfGLLPHQTV 124
Cdd:cd03252 18 LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR----QVGVVLQE-NVLFNRSI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAayALRTRGENRPDALDAAR-------------NWLTKVGLDGYGehypdeLSGGMRQRVGLARALAADTDVLLMDE 191
Cdd:cd03252 93 RDNI--ALADPGMSMERVIEAAKlagahdfiselpeGYDTIVGEQGAG------LSGGQRQRIAIARALIHNPRILIFDE 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1528361663 192 AFSALD----PLIRTEMQDQLlelqatLSKTIVFITHDLdEALRIGDRIAILRDGTLVQVGTPDDILSR 256
Cdd:cd03252 165 ATSALDyeseHAIMRNMHDIC------AGRTVIIIAHRL-STVKNADRIIVMEKGRIVEQGSHDELLAE 226
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
45-271 |
1.20e-29 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 112.88 E-value: 1.20e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAG-----EIVIDGNDVirLDANGLRELRRyKVSMVFQNFGLL 119
Cdd:PRK14271 37 LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGyrysgDVLLGGRSI--FNYRDVLEFRR-RVGMLFQRPNPF 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 120 PhQTVLDNA-----AYALRTRGENRpdalDAARNWLTKVGL-DGYGEHYPD---ELSGGMRQRVGLARALAADTDVLLMD 190
Cdd:PRK14271 114 P-MSIMDNVlagvrAHKLVPRKEFR----GVAQARLTEVGLwDAVKDRLSDspfRLSGGQQQLLCLARTLAVNPEVLLLD 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 191 EAFSALDPLIRTEMQDQLLELQATLskTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFVEKRT 270
Cdd:PRK14271 189 EPTSALDPTTTEKIEEFIRSLADRL--TVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAETARYVAGLS 266
|
.
gi 1528361663 271 G 271
Cdd:PRK14271 267 G 267
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
40-271 |
1.28e-29 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 112.57 E-value: 1.28e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 40 GCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRL--IEPTA---GEIVIDGNDVIRLDANGLrELRRyKVSMVFQ 114
Cdd:PRK14243 21 GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLndLIPGFrveGKVTFHGKNLYAPDVDPV-EVRR-RIGMVFQ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 115 NFGLLPhQTVLDNAAYALRTRGEN-----------RPDAL-DAARNWLTKVGLdgygehypdELSGGMRQRVGLARALAA 182
Cdd:PRK14243 99 KPNPFP-KSIYDNIAYGARINGYKgdmdelverslRQAALwDEVKDKLKQSGL---------SLSGGQQQRLCIARAIAV 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 183 DTDVLLMDEAFSALDPLIRTEMQDQLLELQATLskTIVFITHDLDEALRIGDRIAIL---------RDGTLVQVGTPDDI 253
Cdd:PRK14243 169 QPEVILMDEPCSALDPISTLRIEELMHELKEQY--TIIIVTHNMQQAARVSDMTAFFnveltegggRYGYLVEFDRTEKI 246
|
250
....*....|....*...
gi 1528361663 254 LSRPADEYVRRFVEKRTG 271
Cdd:PRK14243 247 FNSPQQQATRDYVSGRFG 264
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
45-256 |
1.32e-29 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 111.48 E-value: 1.32e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDangLRELRRyKVSMVFQNFGLLPhQTV 124
Cdd:cd03249 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLN---LRWLRS-QIGLVSQEPVLFD-GTI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYAlrtrgenRPDALD-----AAR-----NWLTKVGlDGY----GEHYpDELSGGMRQRVGLARALAADTDVLLMD 190
Cdd:cd03249 94 AENIRYG-------KPDATDeeveeAAKkanihDFIMSLP-DGYdtlvGERG-SQLSGGQKQRIAIARALLRNPKILLLD 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1528361663 191 EAFSALDPLIRTEMQDQLleLQATLSKTIVFITHDLdEALRIGDRIAILRDGTLVQVGTPDDILSR 256
Cdd:cd03249 165 EATSALDAESEKLVQEAL--DRAMKGRTTIVIAHRL-STIRNADLIAVLQNGQVVEQGTHDELMAQ 227
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
44-255 |
2.13e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 112.41 E-value: 2.13e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 44 GLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIdGNDVIRLDANGLRELRRYK--VSMVFQ--NFGLL 119
Cdd:PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIV-GDYAIPANLKKIKEVKRLRkeIGLVFQfpEYQLF 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 120 pHQTVLDNAAYALRTRGENRPDALDAARNWLTKVGL-DGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDP 198
Cdd:PRK13645 105 -QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1528361663 199 LIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILS 255
Cdd:PRK13645 184 KGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
45-253 |
2.91e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 111.76 E-value: 2.91e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRYKVSMVFQnF--GLLPHQ 122
Cdd:PRK13649 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQ-FpeSQLFEE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TVLDNAAYALRTRGENRPDALDAARNWLTKVGLD-GYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIR 201
Cdd:PRK13649 102 TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISeSLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGR 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1528361663 202 TEMQDQLLELQATlSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDI 253
Cdd:PRK13649 182 KELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
45-257 |
3.25e-29 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 114.17 E-value: 3.25e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDAnglRELRRyKVSMVFQ------NF-- 116
Cdd:PRK09536 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSA---RAASR-RVASVPQdtslsfEFdv 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 117 ------GLLPHQTVLDNAAYALRTrgenrpdaldAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMD 190
Cdd:PRK09536 95 rqvvemGRTPHRSRFDTWTETDRA----------AVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLD 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 191 EAFSALDplirTEMQDQLLELQATLS---KTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRP 257
Cdd:PRK09536 165 EPTASLD----INHQVRTLELVRRLVddgKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTAD 230
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
45-254 |
3.31e-29 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 110.94 E-value: 3.31e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDAnglRELRRyKVSMVFQN--------- 115
Cdd:COG4604 17 LDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPS---RELAK-RLAILRQEnhinsrltv 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 116 -----FGLLPHqtvldnaayalrTRGenRPDALDAA--RNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLL 188
Cdd:COG4604 93 relvaFGRFPY------------SKG--RLTAEDREiiDEAIAYLDLEDLADRYLDELSGGQRQRAFIAMVLAQDTDYVL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1528361663 189 MDEAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDIL 254
Cdd:COG4604 159 LDEPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGTPEEII 224
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
43-263 |
3.67e-29 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 112.10 E-value: 3.67e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 43 VGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRlDANGLRElrryKVSMVFQNFGLLPHQ 122
Cdd:TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRR----SIGIVPQYASVDEDL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRT 202
Cdd:TIGR01188 82 TGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRR 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1528361663 203 EMQDQLLELQAtLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVR 263
Cdd:TIGR01188 162 AIWDYIRALKE-EGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLE 221
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
45-265 |
3.78e-29 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 110.50 E-value: 3.78e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLvrhFNR---LIEPTAGEIVIDGNDVIRLDANglrelRRYKVSMvfqnfGLLPH 121
Cdd:COG1137 19 VKDVSLEVNQGEIVGLLGPNGAGKTTT---FYMivgLVKPDSGRIFLDGEDITHLPMH-----KRARLGI-----GYLPQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 122 Q-------TVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFS 194
Cdd:COG1137 86 EasifrklTVEDNILAVLELRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALATNPKFILLDEPFA 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1528361663 195 ALDPLIRTEMQDQLLELQatlSKTI-VFIT-HDLDEALRIGDRIAILRDGTLVQVGTPDDILsrpADEYVRRF 265
Cdd:COG1137 166 GVDPIAVADIQKIIRHLK---ERGIgVLITdHNVRETLGICDRAYIISEGKVLAEGTPEEIL---NNPLVRKV 232
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
45-265 |
4.49e-29 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 110.07 E-value: 4.49e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANglrELRRYKVSMVFQNFGLLPHQTV 124
Cdd:COG0410 19 LHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPH---RIARLGIGYVPEGRRIFPSLTV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDN---AAYALRTRGENRPDaLDAArnwltkvgldgYgEHYPD----------ELSGGMRQRVGLARALAADTDVLLMDE 191
Cdd:COG0410 96 EENlllGAYARRDRAEVRAD-LERV-----------Y-ELFPRlkerrrqragTLSGGEQQMLAIGRALMSRPKLLLLDE 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 192 AFSALDPLIRTEMQDQLLELQATlSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILsrpADEYVRRF 265
Cdd:COG0410 163 PSLGLAPLIVEEIFEIIRRLNRE-GVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELL---ADPEVREA 232
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
47-266 |
5.18e-29 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 111.03 E-value: 5.18e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 47 DVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVirldANGLRELRRYKVSMVFQN--FGLLPHQTV 124
Cdd:PRK15112 31 PLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL----HFGDYSYRSQRIRMIFQDpsTSLNPRQRI 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRGENRPDALDAARNW-LTKVGL-DGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRT 202
Cdd:PRK15112 107 SQILDFPLRLNTDLEPEQREKQIIEtLRQVGLlPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRS 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 203 EMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFV 266
Cdd:PRK15112 187 QLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASPLHELTKRLI 250
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
43-243 |
5.83e-29 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 109.83 E-value: 5.83e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 43 VGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGN----DVIRLDANGLRELRRYKVSMVFQNFGL 118
Cdd:COG4778 25 PVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRHDggwvDLAQASPREILALRRRTIGYVSQFLRV 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 119 LPHQTVLDNAAYALRTRGENRPDALDAARNWLTKVGLDgygEH----YPDELSGGMRQRVGLARALAADTDVLLMDEAFS 194
Cdd:COG4778 105 IPRVSALDVVAEPLLERGVDREEARARARELLARLNLP---ERlwdlPPATFSGGEQQRVNIARGFIADPPLLLLDEPTA 181
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1528361663 195 ALDPLIRTEMQDQLLELQATlSKTIVFITHDLDEALRIGDRIAILRDGT 243
Cdd:COG4778 182 SLDAANRAVVVELIEEAKAR-GTAIIGIFHDEEVREAVADRVVDVTPFS 229
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
46-264 |
8.19e-29 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 114.42 E-value: 8.19e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 46 NDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRL-----IEPTAGEIVIDGNDVIRLDANGLRELRRYKVSMVFQN--FGL 118
Cdd:PRK15134 26 NDVSLQIEAGETLALVGESGSGKSVTALSILRLlpsppVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEpmVSL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 119 LPHQTVLDNAAYALRT-RGENRPDALDAARNWLTKVGLDGYGEH---YPDELSGGMRQRVGLARALAADTDVLLMDEAFS 194
Cdd:PRK15134 106 NPLHTLEKQLYEVLSLhRGMRREAARGEILNCLDRVGIRQAAKRltdYPHQLSGGERQRVMIAMALLTRPELLIADEPTT 185
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 195 ALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRR 264
Cdd:PRK15134 186 ALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSAPTHPYTQK 255
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
45-254 |
1.81e-28 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 109.02 E-value: 1.81e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAG-EIVIDGNDVIRLDangLRELRR---YkVSMVFQNFgLLP 120
Cdd:COG1119 19 LDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVRLFGERRGGED---VWELRKrigL-VSPALQLR-FPR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 121 HQTVLD---NAAYALRTRGeNRPDALDA--ARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSA 195
Cdd:COG1119 94 DETVLDvvlSGFFDSIGLY-REPTDEQRerARELLELLGLAHLADRPFGTLSQGEQRRVLIARALVKDPELLILDEPTAG 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1528361663 196 LDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDIL 254
Cdd:COG1119 173 LDLGARELLLALLDKLAAEGAPTLVLVTHHVEEIPPGITHVLLLKDGRVVAAGPKEEVL 231
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
45-245 |
2.22e-28 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 107.69 E-value: 2.22e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLdANGLRelrryKVSMVFQNFGLLPHQTV 124
Cdd:cd03268 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN-IEALR-----RIGALIEAPGFYPNLTA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRG--ENRPDALdaarnwLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRT 202
Cdd:cd03268 90 RENLRLLARLLGirKKRIDEV------LDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIK 163
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1528361663 203 EMQDQLLELQATlSKTIVFITHDLDEALRIGDRIAILRDGTLV 245
Cdd:cd03268 164 ELRELILSLRDQ-GITVLISSHLLSEIQKVADRIGIINKGKLI 205
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
45-255 |
2.69e-28 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 108.71 E-value: 2.69e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDAnglRELRRYKvsmvfqnfGLLPHQTV 124
Cdd:PRK13548 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSP---AELARRR--------AVLPQHSS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNA----------AYALRTRGENRPDALDAArnwLTKVGLDGYGE-HYPdELSGGMRQRVGLARALA------ADTDVL 187
Cdd:PRK13548 87 LSFPftveevvamgRAPHGLSRAEDDALVAAA---LAQVDLAHLAGrDYP-QLSGGEQQRVQLARVLAqlwepdGPPRWL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1528361663 188 LMDEAFSALDPLirteMQDQLLELQATLSK----TIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILS 255
Cdd:PRK13548 163 LLDEPTSALDLA----HQHHVLRLARQLAHerglAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
45-264 |
4.51e-28 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 107.24 E-value: 4.51e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANglrelRRYKVSMvfqnfGLLPHQ-- 122
Cdd:cd03218 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH-----KRARLGI-----GYLPQEas 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 -----TVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALD 197
Cdd:cd03218 86 ifrklTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVD 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1528361663 198 PLIRTEMQDQLLELQatlSKTI-VFIT-HDLDEALRIGDRIAILRDGTLVQVGTPDDILsrpADEYVRR 264
Cdd:cd03218 166 PIAVQDIQKIIKILK---DRGIgVLITdHNVRETLSITDRAYIIYEGKVLAEGTPEEIA---ANELVRK 228
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
34-263 |
1.14e-27 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 111.49 E-value: 1.14e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 34 DVLSETGCNV----------GLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDG-------NDVIRL 96
Cdd:PRK10261 11 DVLAVENLNIafmqeqqkiaAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKmllrrrsRQVIEL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 97 DANGLRELRRYK---VSMVFQN--FGLLPHQTVLDNAAYALRT-RGENRPDALDAARNWLTKVGLDGYGE---HYPDELS 167
Cdd:PRK10261 91 SEQSAAQMRHVRgadMAMIFQEpmTSLNPVFTVGEQIAESIRLhQGASREEAMVEAKRMLDQVRIPEAQTilsRYPHQLS 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 168 GGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQV 247
Cdd:PRK10261 171 GGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVET 250
|
250
....*....|....*.
gi 1528361663 248 GTPDDILSRPADEYVR 263
Cdd:PRK10261 251 GSVEQIFHAPQHPYTR 266
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
45-256 |
1.27e-27 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 111.26 E-value: 1.27e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDvirLDANGLRELRRyKVSMVFQNFGLLpHQTV 124
Cdd:PRK11176 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHD---LRDYTLASLRN-QVALVSQNVHLF-NDTI 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYAlRTRGENRPDALDAAR-----NWLTKV--GLDGY-GEHyPDELSGGMRQRVGLARALAADTDVLLMDEAFSAL 196
Cdd:PRK11176 434 ANNIAYA-RTEQYSREQIEEAARmayamDFINKMdnGLDTViGEN-GVLLSGGQRQRIAIARALLRDSPILILDEATSAL 511
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 197 DPLIRTEMQDQLLELQAtlSKTIVFITHDLdEALRIGDRIAILRDGTLVQVGTPDDILSR 256
Cdd:PRK11176 512 DTESERAIQAALDELQK--NRTSLVIAHRL-STIEKADEILVVEDGEIVERGTHAELLAQ 568
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
45-269 |
1.96e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 107.24 E-value: 1.96e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDvIRLDANGLRELRRyKVSMVFQNfgllP-HQ- 122
Cdd:PRK13636 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKP-IDYSRKGLMKLRE-SVGMVFQD----PdNQl 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 ---TVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPL 199
Cdd:PRK13636 96 fsaSVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPM 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 200 IRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILsrpADEYVRRFVEKR 269
Cdd:PRK13636 176 GVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF---AEKEMLRKVNLR 242
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
42-242 |
2.10e-27 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 106.64 E-value: 2.10e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 42 NVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLI---EPTAGEIVIDGNDVIRlDANGLRELR--RYKVSMVFQNF 116
Cdd:PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLItgdKSAGSHIELLGRTVQR-EGRLARDIRksRANTGYIFQQF 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 117 GLLPHQTVLDNAAY-AL------RT-----RGENRPDALDAarnwLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADT 184
Cdd:PRK09984 96 NLVNRLSVLENVLIgALgstpfwRTcfswfTREQKQRALQA----LTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQA 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361663 185 DVLLMDEAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDG 242
Cdd:PRK09984 172 KVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
45-257 |
5.14e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 105.66 E-value: 5.14e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRldaNGLRELRRYkVSMVFQN--------- 115
Cdd:PRK13652 20 LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITK---ENIREVRKF-VGLVFQNpddqifspt 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 116 ------FGllPHQTVLDNAAYALRtrgenrpdaLDAArnwLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLM 189
Cdd:PRK13652 96 veqdiaFG--PINLGLDEETVAHR---------VSSA---LHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVL 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361663 190 DEAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRP 257
Cdd:PRK13652 162 DEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1-256 |
9.05e-27 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 104.39 E-value: 9.05e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 1 MAT-IDVRHVYKLFGPEAAHPRVL--DLLRAGKRKADVLsetgcnVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNR 77
Cdd:COG1134 1 MSSmIEVENVSKSYRLYHEPSRSLkeLLLRRRRTRREEF------WALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAG 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 78 LIEPTAGEIVIDGndvirldanglrelrryKVSMVFQ-NFGLLPHQTVLDNAAYALRTRGENRP---------------- 140
Cdd:COG1134 75 ILEPTSGRVEVNG-----------------RVSALLElGAGFHPELTGRENIYLNGRLLGLSRKeidekfdeivefaelg 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 141 DALDaarnwlTKVGldgygeHYpdelSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQDQLLELQATlSKTIV 220
Cdd:COG1134 138 DFID------QPVK------TY----SSGMRARLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIRELRES-GRTVI 200
|
250 260 270
....*....|....*....|....*....|....*.
gi 1528361663 221 FITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSR 256
Cdd:COG1134 201 FVSHSMGAVRRLCDRAIWLEKGRLVMDGDPEEVIAA 236
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
45-245 |
9.84e-27 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 103.44 E-value: 9.84e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDAnglRELRRyKVSMVFQNFGLLpHQTV 124
Cdd:cd03245 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDP---ADLRR-NIGYVPQDVTLF-YGTL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRGENRpdALDAAR----NWLTKVGLDGY----GEHyPDELSGGMRQRVGLARALAADTDVLLMDEAFSAL 196
Cdd:cd03245 95 RDNITLGAPLADDER--ILRAAElagvTDFVNKHPNGLdlqiGER-GRGLSGGQRQAVALARALLNDPPILLLDEPTSAM 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1528361663 197 DplIRTEMqdQLLE-LQATLS-KTIVFITHDLdEALRIGDRIAILRDGTLV 245
Cdd:cd03245 172 D--MNSEE--RLKErLRQLLGdKTLIIITHRP-SLLDLVDRIIVMDSGRIV 217
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
40-239 |
1.67e-26 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 107.76 E-value: 1.67e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 40 GCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRElrryKVSMVFQNFGLL 119
Cdd:TIGR02857 333 GRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD----QIAWVPQHPFLF 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 120 PhQTVLDNAAYAlrtrgenRPDALDAA-RNWLTKVGLDGY------------GEHyPDELSGGMRQRVGLARALAADTDV 186
Cdd:TIGR02857 409 A-GTIAENIRLA-------RPDASDAEiREALERAGLDEFvaalpqgldtpiGEG-GAGLSGGQAQRLALARAFLRDAPL 479
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1528361663 187 LLMDEAFSALDPLIRTEMQDQLLELQATlsKTIVFITHDLdEALRIGDRIAIL 239
Cdd:TIGR02857 480 LLLDEPTAHLDAETEAEVLEALRALAQG--RTVLLVTHRL-ALAALADRIVVL 529
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
45-244 |
1.91e-26 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 101.52 E-value: 1.91e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELrrykVSMVFQNFGLLPhQTV 124
Cdd:cd03246 18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDH----VGYLPQDDELFS-GSI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAayalrtrgenrpdaldaarnwltkvgldgygehypdeLSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEM 204
Cdd:cd03246 93 AENI-------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERAL 135
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1528361663 205 QDQLLELQATlSKTIVFITHDLdEALRIGDRIAILRDGTL 244
Cdd:cd03246 136 NQAIAALKAA-GATRIVIAHRP-ETLASADRILVLEDGRV 173
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
45-257 |
2.26e-26 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 107.89 E-value: 2.26e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRElrryKVSMVFQNfGLLPHQTV 124
Cdd:TIGR00958 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR----QVALVGQE-PVLFSGSV 571
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALR--TRGENRPDALDA-ARNWLTKVGlDGY----GEHyPDELSGGMRQRVGLARALAADTDVLLMDEAFSALD 197
Cdd:TIGR00958 572 RENIAYGLTdtPDEEIMAAAKAAnAHDFIMEFP-NGYdtevGEK-GSQLSGGQKQRIAIARALVRKPRVLILDEATSALD 649
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 198 plirTEMQDQLLELQATLSKTIVFITHDLDEALRiGDRIAILRDGTLVQVGTPDDILSRP 257
Cdd:TIGR00958 650 ----AECEQLLQESRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMEDQ 704
|
|
| NHLM_micro_ABC2 |
TIGR03797 |
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family ... |
45-257 |
7.51e-26 |
|
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]
Pssm-ID: 274789 [Multi-domain] Cd Length: 686 Bit Score: 106.58 E-value: 7.51e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVR---HFNRliePTAGEIVIDGNDVIRLDangLRELRRyKVSMVFQNFGLLPh 121
Cdd:TIGR03797 469 LDDVSLQIEPGEFVAIVGPSGSGKSTLLRlllGFET---PESGSVFYDGQDLAGLD---VQAVRR-QLGVVLQNGRLMS- 540
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 122 QTVLDNAAYALRTRGEnrpDALDAARnwltKVGLDG------YGEH-YPDE----LSGGMRQRVGLARALAADTDVLLMD 190
Cdd:TIGR03797 541 GSIFENIAGGAPLTLD---EAWEAAR----MAGLAEdirampMGMHtVISEgggtLSGGQRQRLLIARALVRKPRILLFD 613
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1528361663 191 EAFSALDplirTEMQDQLLELQATLSKTIVFITHDLdEALRIGDRIAILRDGTLVQVGTPDDILSRP 257
Cdd:TIGR03797 614 EATSALD----NRTQAIVSESLERLKVTRIVIAHRL-STIRNADRIYVLDAGRVVQQGTYDELMARE 675
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
39-263 |
7.57e-26 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 105.94 E-value: 7.57e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 39 TGCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIePTAGEIVIDGNDVIRLDANGLRELRRyKVSMVFQ--NF 116
Cdd:PRK15134 296 VDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRH-RIQVVFQdpNS 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 117 GLLPHQTVLDNAAYALRTrgeNRPDALDAARNW-----LTKVGLDGYGEH-YPDELSGGMRQRVGLARALAADTDVLLMD 190
Cdd:PRK15134 374 SLNPRLNVLQIIEEGLRV---HQPTLSAAQREQqviavMEEVGLDPETRHrYPAEFSGGQRQRIAIARALILKPSLIILD 450
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1528361663 191 EAFSALDpliRTeMQDQLLELQATLSKT----IVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVR 263
Cdd:PRK15134 451 EPTSSLD---KT-VQAQILALLKSLQQKhqlaYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEYTR 523
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
45-256 |
7.61e-26 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 105.99 E-value: 7.61e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDAnglRELRRYkvsmvfqnFGLLPHQ-- 122
Cdd:COG4618 348 LRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDR---EELGRH--------IGYLPQDve 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 ----TVLDNAAyalRTRGENRPDALDAARnwltKVGL--------DGYgEHYPDE----LSGGMRQRVGLARALAADTDV 186
Cdd:COG4618 417 lfdgTIAENIA---RFGDADPEKVVAAAK----LAGVhemilrlpDGY-DTRIGEggarLSGGQRQRIGLARALYGDPRL 488
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1528361663 187 LLMDEAFSALDP-----LIRTemqdqLLELQATlSKTIVFITHDLdEALRIGDRIAILRDGTLVQVGTPDDILSR 256
Cdd:COG4618 489 VVLDEPNSNLDDegeaaLAAA-----IRALKAR-GATVVVITHRP-SLLAAVDKLLVLRDGRVQAFGPRDEVLAR 556
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
48-261 |
7.86e-26 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 103.67 E-value: 7.86e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 48 VSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIE-P---TAGEIVIDGNDVIRLDANGLRELRRYKVSMVFQN--FGLLPH 121
Cdd:PRK11022 26 ISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDyPgrvMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDpmTSLNPC 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 122 QTVLDNAAYALRT-RGENRPDALDAARNWLTKVGL---DGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALD 197
Cdd:PRK11022 106 YTVGFQIMEAIKVhQGGNKKTRRQRAIDLLNQVGIpdpASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALD 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 198 PLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEY 261
Cdd:PRK11022 186 VTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPY 249
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
45-258 |
8.64e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 102.51 E-value: 8.64e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVirlDANGLRELRRyKVSMVFQN-----FGll 119
Cdd:PRK13647 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREV---NAENEKWVRS-KVGLVFQDpddqvFS-- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 120 phQTVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPl 199
Cdd:PRK13647 95 --STVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP- 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1528361663 200 irtEMQDQLLELQATLS---KTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPdDILSRPA 258
Cdd:PRK13647 172 ---RGQETLMEILDRLHnqgKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK-SLLTDED 229
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
45-245 |
1.92e-25 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 100.33 E-value: 1.92e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRyKVSMVFQNFGLLPHQTV 124
Cdd:PRK10908 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR-QIGMIFQDHHLLMDRTV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIrTEM 204
Cdd:PRK10908 97 YDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDAL-SEG 175
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1528361663 205 QDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLV 245
Cdd:PRK10908 176 ILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
14-254 |
2.61e-25 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 102.60 E-value: 2.61e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 14 GPEAAHPRVLDLLRAGKRKADVLSETGCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDV 93
Cdd:PRK13536 26 ISEAKASIPGSMSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPV 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 94 irldaNGLRELRRYKVSMVFQNFGLLPHQTVLDNAA-----YALRTRG--ENRPDALDAARnwltkvgLDGYGEHYPDEL 166
Cdd:PRK13536 106 -----PARARLARARIGVVPQFDNLDLEFTVRENLLvfgryFGMSTREieAVIPSLLEFAR-------LESKADARVSDL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 167 SGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQDQLLELQAtLSKTIVFITHDLDEALRIGDRIAILRDGTLVQ 246
Cdd:PRK13536 174 SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLEAGRKIA 252
|
....*...
gi 1528361663 247 VGTPDDIL 254
Cdd:PRK13536 253 EGRPHALI 260
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
4-248 |
2.98e-25 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 99.91 E-value: 2.98e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 4 IDVRHVYKLFgpeaahprVLDLLRAGKRKADVLSETGCNVG----LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLI 79
Cdd:cd03220 1 IELENVSKSY--------PTYKGGSSSLKKLGILGRKGEVGefwaLKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 80 EPTAGEIVIDGNDVIRLDANGlrelrrykvsmvfqnfGLLPHQTVLDNAAYALRTRGeNRPDALDAARNWLtkVGLDGYG 159
Cdd:cd03220 73 PPDSGTVTVRGRVSSLLGLGG----------------GFNPELTGRENIYLNGRLLG-LSRKEIDEKIDEI--IEFSELG 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 160 EHYPD---ELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQDQLLELQATlSKTIVFITHDLDEALRIGDRI 236
Cdd:cd03220 134 DFIDLpvkTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRA 212
|
250
....*....|..
gi 1528361663 237 AILRDGTLVQVG 248
Cdd:cd03220 213 LVLEKGKIRFDG 224
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
34-228 |
4.52e-25 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 99.40 E-value: 4.52e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 34 DVLSETGCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDAnglrELRRYKVSMVF 113
Cdd:PRK10247 12 NVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP----EIYRQQVSYCA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 114 QN---FGllphQTVLDNAAYALRTRGEnRPDAlDAARNWLTKVGLDgygEHYPD----ELSGGMRQRVGLARALAADTDV 186
Cdd:PRK10247 88 QTptlFG----DTVYDNLIFPWQIRNQ-QPDP-AIFLDDLERFALP---DTILTkniaELSGGEKQRISLIRNLQFMPKV 158
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1528361663 187 LLMDEAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDE 228
Cdd:PRK10247 159 LLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE 200
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
45-250 |
6.20e-25 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 98.72 E-value: 6.20e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLdanGLRELRRyKVSMVFQN--------- 115
Cdd:cd03244 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKI---GLHDLRS-RISIIPQDpvlfsgtir 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 116 FGLLPHQT--------VLDNAayALRTRGENRPDALDaarnwlTKVGLDGygehypDELSGGMRQRVGLARALAADTDVL 187
Cdd:cd03244 96 SNLDPFGEysdeelwqALERV--GLKEFVESLPGGLD------TVVEEGG------ENLSVGQRQLLCLARALLRKSKIL 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1528361663 188 LMDEAFSALDP--------LIRTEMQDqllelqatlsKTIVFITHDLDEALRIgDRIAILRDGTLVQVGTP 250
Cdd:cd03244 162 VLDEATASVDPetdaliqkTIREAFKD----------CTVLTIAHRLDTIIDS-DRILVLDKGRVVEFDSP 221
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
40-226 |
6.59e-25 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 103.21 E-value: 6.59e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 40 GCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELrrykVSMVFQNFGLL 119
Cdd:TIGR02868 346 GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRR----VSVCAQDAHLF 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 120 pHQTVLDNAAYAlrtrgenRPDALDAARNW-LTKVGLDGYGEHYPD-----------ELSGGMRQRVGLARALAADTDVL 187
Cdd:TIGR02868 422 -DTTVRENLRLA-------RPDATDEELWAaLERVGLADWLRALPDgldtvlgeggaRLSGGERQRLALARALLADAPIL 493
|
170 180 190
....*....|....*....|....*....|....*....
gi 1528361663 188 LMDEAFSALDPLIRTEMQDQLleLQATLSKTIVFITHDL 226
Cdd:TIGR02868 494 LLDEPTEHLDAETADELLEDL--LAALSGRTVVLITHHL 530
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
47-258 |
8.73e-25 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 101.10 E-value: 8.73e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 47 DVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIdgNDVIRLDA-NGLR---ELRRykVSMVFQNFGLLPHQ 122
Cdd:PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVL--NGRVLFDAeKGIClppEKRR--IGYVFQDARLFPHY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TVLDNAAYALRtrgENRPDALDAArnwltkVGLDGYgEH----YPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDP 198
Cdd:PRK11144 92 KVRGNLRYGMA---KSMVAQFDKI------VALLGI-EPlldrYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 199 LIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPA 258
Cdd:PRK11144 162 PRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
42-245 |
2.00e-24 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 98.62 E-value: 2.00e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 42 NVGLNDVSLGIASGEIFVIMGLSGSGKSTLvrhFNRL---IEPTAGEIVIDGNDVirldaNGLRELRRYK-VSMVFQN-- 115
Cdd:COG1101 19 KRALDGLNLTIEEGDFVTVIGSNGAGKSTL---LNAIagsLPPDSGSILIDGKDV-----TKLPEYKRAKyIGRVFQDpm 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 116 FGLLPHQTVLDNAAYALRtRGENRP--DALDAARNWL-----------------TKVGLdgygehypdeLSGGMRQRVGL 176
Cdd:COG1101 91 MGTAPSMTIEENLALAYR-RGKRRGlrRGLTKKRRELfrellatlglglenrldTKVGL----------LSGGQRQALSL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1528361663 177 ARALAADTDVLLMDEAFSALDPliRTemQDQLLELQATLSK----TIVFITHDLDEALRIGDRIAILRDGTLV 245
Cdd:COG1101 160 LMATLTKPKLLLLDEHTAALDP--KT--AALVLELTEKIVEennlTTLMVTHNMEQALDYGNRLIMMHEGRII 228
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
47-266 |
3.31e-24 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 97.85 E-value: 3.31e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 47 DVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEP----TAGEIVIDGNDVirldanGLRELRRYKVSMVFQN----FGl 118
Cdd:PRK10418 21 GVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAgvrqTAGRVLLDGKPV------APCALRGRKIATIMQNprsaFN- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 119 lPHQTVLDNAAYALRTRGenRPDALDAARNWLTKVGLDGYG---EHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSA 195
Cdd:PRK10418 94 -PLHTMHTHARETCLALG--KPADDATLTAALEAVGLENAArvlKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTD 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1528361663 196 LDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVRRFV 266
Cdd:PRK10418 171 LDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRSLV 241
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
47-255 |
4.08e-24 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 97.75 E-value: 4.08e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 47 DVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDAnglRELRRyKVSMVFQNF---------- 116
Cdd:PRK10253 25 NLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYAS---KEVAR-RIGLLAQNAttpgditvqe 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 117 ----GLLPHQTVLDnaayalRTRGENRpDALDAArnwLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEA 192
Cdd:PRK10253 101 lvarGRYPHQPLFT------RWRKEDE-EAVTKA---MQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEP 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1528361663 193 FSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILS 255
Cdd:PRK10253 171 TTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
46-261 |
6.00e-24 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 98.64 E-value: 6.00e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 46 NDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEP---TAGEIVIDGNDVIRLDANGLRELRRYKVSMVFQN--FGLLP 120
Cdd:PRK09473 33 NDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAAngrIGGSATFNGREILNLPEKELNKLRAEQISMIFQDpmTSLNP 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 121 HQTVLDNAAYALRT-RGENRPDA-------LDA-----ARNWLTKvgldgygehYPDELSGGMRQRVGLARALAADTDVL 187
Cdd:PRK09473 113 YMRVGEQLMEVLMLhKGMSKAEAfeesvrmLDAvkmpeARKRMKM---------YPHEFSGGMRQRVMIAMALLCRPKLL 183
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 188 LMDEAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEY 261
Cdd:PRK09473 184 IADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPSHPY 257
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
56-250 |
6.02e-24 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 101.24 E-value: 6.02e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 56 EIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDV-IRLDAnglrelRRYKVSMVFQNFGLLPHQTVLDNAAYALRT 134
Cdd:TIGR01257 957 QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIeTNLDA------VRQSLGMCPQHNILFHHLTVAEHILFYAQL 1030
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 135 RGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQDQLLELQAt 214
Cdd:TIGR01257 1031 KGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRS- 1109
|
170 180 190
....*....|....*....|....*....|....*.
gi 1528361663 215 lSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTP 250
Cdd:TIGR01257 1110 -GRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTP 1144
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
45-244 |
6.37e-24 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 95.19 E-value: 6.37e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDAnglRELRRYKVSMV---FQNFGLLPH 121
Cdd:cd03215 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSP---RDAIRAGIAYVpedRKREGLVLD 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 122 QTVLDNAAYALRtrgenrpdaldaarnwltkvgldgygehypdeLSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIR 201
Cdd:cd03215 93 LSVAENIALSSL--------------------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAK 140
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1528361663 202 TEMQDQLLELqATLSKTIVFITHDLDEALRIGDRIAILRDGTL 244
Cdd:cd03215 141 AEIYRLIREL-ADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
45-266 |
9.04e-24 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 99.86 E-value: 9.04e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELrryKVSMVFQNFGLLPHQTV 124
Cdd:PRK09700 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL---GIGIIYQELSVIDELTV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYA-LRTRGENRPDALD------AARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALD 197
Cdd:PRK09700 98 LENLYIGrHLTKKVCGVNIIDwremrvRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLT 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1528361663 198 plirTEMQDQLLELQATL---SKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDIlsrPADEYVRRFV 266
Cdd:PRK09700 178 ----NKEVDYLFLIMNQLrkeGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV---SNDDIVRLMV 242
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
44-256 |
1.61e-23 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 99.65 E-value: 1.61e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 44 GLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLdanGLRELRRYkVSMVFQNFGLLpHQT 123
Cdd:PRK13657 350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTV---TRASLRRN-IAVVFQDAGLF-NRS 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 124 VLDNaayaLRTrgeNRPDALDA----------ARNWLTKvGLDGYGEHYPD---ELSGGMRQRVGLARALAADTDVLLMD 190
Cdd:PRK13657 425 IEDN----IRV---GRPDATDEemraaaeraqAHDFIER-KPDGYDTVVGErgrQLSGGERQRLAIARALLKDPPILILD 496
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1528361663 191 EAFSALDPLIRTEMQDQLLELQAtlSKTIVFITHDLdEALRIGDRIAILRDGTLVQVGTPDDILSR 256
Cdd:PRK13657 497 EATSALDVETEAKVKAALDELMK--GRTTFIIAHRL-STVRNADRILVFDNGRVVESGSFDELVAR 559
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
45-256 |
9.52e-23 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 97.20 E-value: 9.52e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELrrykVSMVFQNFGLLPHqTV 124
Cdd:PRK11160 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA----ISVVSQRVHLFSA-TL 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALrtrgenrPDALDAA-RNWLTKVGLDGYGEHypDE------------LSGGMRQRVGLARALAADTDVLLMDE 191
Cdd:PRK11160 431 RDNLLLAA-------PNASDEAlIEVLQQVGLEKLLED--DKglnawlgeggrqLSGGEQRRLGIARALLHDAPLLLLDE 501
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1528361663 192 AFSALDPliRTEMQDQLLELQATLSKTIVFITHDLdEALRIGDRIAILRDGTLVQVGTPDDILSR 256
Cdd:PRK11160 502 PTEGLDA--ETERQILELLAEHAQNKTVLMITHRL-TGLEQFDRICVMDNGQIIEQGTHQELLAQ 563
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
46-257 |
1.39e-22 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 93.52 E-value: 1.39e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 46 NDVSLGIASGEIFVIMGLSGSGKSTLvrhFNRL---IEPTAGEIVIDGNDVIRLDANglrELRRYKVSMVFQNFGLLPHQ 122
Cdd:PRK11300 22 NNVNLEVREQEIVSLIGPNGAGKTTV---FNCLtgfYKPTGGTILLRGQHIEGLPGH---QIARMGVVRTFQHVRLFREM 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TVLDNAAYA-------------LRTRGENRP--DALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVL 187
Cdd:PRK11300 96 TVIENLLVAqhqqlktglfsglLKTPAFRRAesEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEIL 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 188 LMDEAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRP 257
Cdd:PRK11300 176 MLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNNP 245
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
45-256 |
1.84e-22 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 96.43 E-value: 1.84e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRelrrykvsmvfQNFGLLPHQTV 124
Cdd:COG5265 374 LKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDVTQASLR-----------AAIGIVPQDTV 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 L------DNAAYAlrtrgenRPDA-----LDAARN-------------WLTKVGLDGYgehypdELSGGMRQRVGLARAL 180
Cdd:COG5265 443 LfndtiaYNIAYG-------RPDAseeevEAAARAaqihdfieslpdgYDTRVGERGL------KLSGGEKQRVAIARTL 509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 181 AADTDVLLMDEAFSALDPliRTEMqdqllELQATLSK------TIVfITHDLD---EAlrigDRIAILRDGTLVQVGTPD 251
Cdd:COG5265 510 LKNPPILIFDEATSALDS--RTER-----AIQAALREvargrtTLV-IAHRLStivDA----DEILVLEAGRIVERGTHA 577
|
....*
gi 1528361663 252 DILSR 256
Cdd:COG5265 578 ELLAQ 582
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
47-264 |
1.99e-22 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 92.65 E-value: 1.99e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 47 DVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDangLRELRRYKVSMVFQNFGLLPHQTVLD 126
Cdd:PRK10895 21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLP---LHARARRGIGYLPQEASIFRRLSVYD 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 127 NAAYALRTRGE-NRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQ 205
Cdd:PRK10895 98 NLMAVLQIRDDlSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIK 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 206 DQLLELQAtlSKTIVFIT-HDLDEALRIGDRIAILRDGTLVQVGTPDDILsrpADEYVRR 264
Cdd:PRK10895 178 RIIEHLRD--SGLGVLITdHNVRETLAVCERAYIVSQGHLIAHGTPTEIL---QDEHVKR 232
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
45-256 |
2.10e-22 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 96.02 E-value: 2.10e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVrHFNRLI---EPTAGEIVI----------------DGN-------------- 91
Cdd:TIGR03269 16 LKNISFTIEEGEVLGILGRSGAGKSVLM-HVLRGMdqyEPTSGRIIYhvalcekcgyverpskVGEpcpvcggtlepeev 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 92 DVIRLDANGLRELRRYKVSMVFQNFGLLPHQTVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMR 171
Cdd:TIGR03269 95 DFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEK 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 172 QRVGLARALAADTDVLLMDEAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPD 251
Cdd:TIGR03269 175 QRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPD 254
|
....*
gi 1528361663 252 DILSR 256
Cdd:TIGR03269 255 EVVAV 259
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
48-261 |
2.47e-22 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 94.20 E-value: 2.47e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 48 VSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEP----TAGEIVIDGNDVIRLDANGLRELRRYKVSMVFQNfgllPhQT 123
Cdd:COG4170 26 VSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDnwhvTADRFRWNGIDLLKLSPRERRKIIGREIAMIFQE----P-SS 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 124 VLDNAAYALRTRGENRPD-------------ALDAARNWLTKVGL---DGYGEHYPDELSGGMRQRVGLARALAADTDVL 187
Cdd:COG4170 101 CLDPSAKIGDQLIEAIPSwtfkgkwwqrfkwRKKRAIELLHRVGIkdhKDIMNSYPHELTEGECQKVMIAMAIANQPRLL 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361663 188 LMDEAFSALDPLirteMQDQLLELQATLSK----TIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEY 261
Cdd:COG4170 181 IADEPTNAMEST----TQAQIFRLLARLNQlqgtSILLISHDLESISQWADTITVLYCGQTVESGPTEQILKSPHHPY 254
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
40-266 |
2.84e-22 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 92.59 E-value: 2.84e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 40 GCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRYKVSMVFQNFgll 119
Cdd:TIGR02323 14 GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGF--- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 120 phqtVLDNAAYALRTR---GEN---RPDALDA---------ARNWLTKVGLD-GYGEHYPDELSGGMRQRVGLARALAAD 183
Cdd:TIGR02323 91 ----VHQNPRDGLRMRvsaGANigeRLMAIGArhygniratAQDWLEEVEIDpTRIDDLPRAFSGGMQQRLQIARNLVTR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 184 TDVLLMDEAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYVR 263
Cdd:TIGR02323 167 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQ 246
|
...
gi 1528361663 264 RFV 266
Cdd:TIGR02323 247 LLV 249
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
45-256 |
3.19e-22 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 93.33 E-value: 3.19e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVirldaNGLRELRRYKVSMVFQNFGLLPHQTV 124
Cdd:PRK13537 23 VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPV-----PSRARHARQRVGVVPQFDNLDPDFTV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEM 204
Cdd:PRK13537 98 RENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLM 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1528361663 205 QDQLLELQATlSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSR 256
Cdd:PRK13537 178 WERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
43-261 |
5.29e-22 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 91.91 E-value: 5.29e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 43 VGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGL-----RELRRYKVSMVFQNF- 116
Cdd:PRK11701 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALseaerRRLLRTEWGFVHQHPr 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 117 -GLLPHQTVLDNAAYALRTRGENRPDAL-DAARNWLTKVGLD-GYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAF 193
Cdd:PRK11701 100 dGLRMQVSAGGNIGERLMAVGARHYGDIrATAGDWLERVEIDaARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPT 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361663 194 SALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEY 261
Cdd:PRK11701 180 GGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDDPQHPY 247
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
45-244 |
5.87e-22 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 90.99 E-value: 5.87e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRElrryKVSMVFQNfGLLPHQTV 124
Cdd:cd03248 30 LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS----KVSLVGQE-PVLFARSL 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRGENRPDALDAARNWLTKVGL--DGYGEHYPD---ELSGGMRQRVGLARALAADTDVLLMDEAFSALDpl 199
Cdd:cd03248 105 QDNIAYGLQSCSFECVKEAAQKAHAHSFISElaSGYDTEVGEkgsQLSGGQKQRVAIARALIRNPQVLILDEATSALD-- 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1528361663 200 IRTEMQDQLLELQATLSKTIVFITHDLDEALRiGDRIAILRDGTL 244
Cdd:cd03248 183 AESEQQVQQALYDWPERRTVLVIAHRLSTVER-ADQILVLDGGRI 226
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
45-239 |
9.51e-22 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 89.60 E-value: 9.51e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIrldanglrelrrykvsmvfqnfGLLPHQTV 124
Cdd:NF040873 8 LHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAGGARV----------------------AYVPQRSE 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNA-------AYAL----RTRGENRPDALDAAR--NWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDE 191
Cdd:NF040873 66 VPDSlpltvrdLVAMgrwaRRGLWRRLTRDDRAAvdDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDE 145
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1528361663 192 AFSALDPLIRTEMQDQLLELQATlSKTIVFITHDLDEALRIgDRIAIL 239
Cdd:NF040873 146 PTTGLDAESRERIIALLAEEHAR-GATVVVVTHDLELVRRA-DPCVLL 191
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
45-248 |
1.91e-20 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 85.83 E-value: 1.91e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANglrelRRYKVSMVFQNfgllPH--- 121
Cdd:cd03247 18 LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKA-----LSSLISVLNQR----PYlfd 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 122 QTVLDNaayalrtrgenrpdaldaarnwltkVGLdgygehypdELSGGMRQRVGLARALAADTDVLLMDEAFSALDPliR 201
Cdd:cd03247 89 TTLRNN-------------------------LGR---------RFSGGERQRLALARILLQDAPIVLLDEPTVGLDP--I 132
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1528361663 202 TEMqdQLLEL--QATLSKTIVFITHDLdEALRIGDRIAILRDGTLVQVG 248
Cdd:cd03247 133 TER--QLLSLifEVLKDKTLIWITHHL-TGIEHMDKILFLENGKIIMQG 178
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
45-265 |
1.36e-19 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 88.11 E-value: 1.36e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVirlDANGLRELRRYkVSMVFQNFGLLPHqtV 124
Cdd:PRK10522 339 VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV---TAEQPEDYRKL-FSAVFTDFHLFDQ--L 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAayalrtrGENRPDALdaARNWLT------KVGLDGyGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDP 198
Cdd:PRK10522 413 LGPE-------GKPANPAL--VEKWLErlkmahKLELED-GRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDP 482
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361663 199 LIRTEMQDQLLELQATLSKTIVFITHDlDEALRIGDRIAILRDGTLVQV-GTPDDILSRPAdeyVRRF 265
Cdd:PRK10522 483 HFRREFYQVLLPLLQEMGKTIFAISHD-DHYFIHADRLLEMRNGQLSELtGEERDAASRDA---VART 546
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
26-248 |
3.16e-19 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 83.86 E-value: 3.16e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 26 LRAGKRKADVLSETGCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEP---TAGEIVIDGndvirldanglR 102
Cdd:cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGggtTSGQILFNG-----------Q 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 103 ELRRYK----VSMVFQNFGLLPHQTVLDNAAYALRTRGENR-PDALDAAR---NWLTKVGLDGYGEHYPDELSGGMRQRV 174
Cdd:cd03234 73 PRKPDQfqkcVAYVRQDDILLPGLTVRETLTYTAILRLPRKsSDAIRKKRvedVLLRDLALTRIGGNLVKGISGGERRRV 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 175 GLARALAADTDVLLMDEAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVG 248
Cdd:cd03234 153 SIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
35-253 |
3.28e-19 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 86.62 E-value: 3.28e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 35 VLSETGcNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELR-------RY 107
Cdd:COG3845 265 VRDDRG-VPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERRRLGvayipedRL 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 108 KVSMV------------------FQNFGLLPHQTVLDNA-----AYALRTRGENRPdaldaARNwltkvgldgygehypd 164
Cdd:COG3845 344 GRGLVpdmsvaenlilgryrrppFSRGGFLDRKAIRAFAeelieEFDVRTPGPDTP-----ARS---------------- 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 165 eLSGGMRQRVGLARALAADTDVLLMDEAFSALDP----LIRtemqDQLLELQATlSKTIVFITHDLDEALRIGDRIAILR 240
Cdd:COG3845 403 -LSGGNQQKVILARELSRDPKLLIAAQPTRGLDVgaieFIH----QRLLELRDA-GAAVLLISEDLDEILALSDRIAVMY 476
|
250
....*....|...
gi 1528361663 241 DGTLVQVGTPDDI 253
Cdd:COG3845 477 EGRIVGEVPAAEA 489
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
45-248 |
3.52e-19 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 82.98 E-value: 3.52e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHF-NRLIEP-TAGEIVIDGndvIRLDANGLrelrRYKVSMVFQNFGLLPHQ 122
Cdd:cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALaGRRTGLgVSGEVLING---RPLDKRSF----RKIIGYVPQDDILHPTL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TVLDNAAYALRTRGenrpdaldaarnwltkvgldgygehypdeLSGGMRQRVGLARALAADTDVLLMDEAFSALDPLirt 202
Cdd:cd03213 98 TVRETLMFAAKLRG-----------------------------LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSS--- 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1528361663 203 eMQDQLLEL---QATLSKTIVFITHDL-DEALRIGDRIAILRDGTLVQVG 248
Cdd:cd03213 146 -SALQVMSLlrrLADTGRTIICSIHQPsSEIFELFDKLLLLSQGRVIYFG 194
|
|
| NHLM_micro_ABC1 |
TIGR03796 |
NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein; This protein describes ... |
45-257 |
4.16e-19 |
|
NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein; This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]
Pssm-ID: 274788 [Multi-domain] Cd Length: 710 Bit Score: 86.54 E-value: 4.16e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGndvIRLDANGLRELRRyKVSMVFQNFGLLpHQTV 124
Cdd:TIGR03796 495 IENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDG---IPREEIPREVLAN-SVAMVDQDIFLF-EGTV 569
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNaaYALRTRGENRPDALDAARNW------LTKVGldGYgeHYPDE-----LSGGMRQRVGLARALAADTDVLLMDEAF 193
Cdd:TIGR03796 570 RDN--LTLWDPTIPDADLVRACKDAaihdviTSRPG--GY--DAELAegganLSGGQRQRLEIARALVRNPSILILDEAT 643
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1528361663 194 SALDPLirTEmqdqlLELQATLSK---TIVFITHDLdEALRIGDRIAILRDGTLVQVGTPDDILSRP 257
Cdd:TIGR03796 644 SALDPE--TE-----KIIDDNLRRrgcTCIIVAHRL-STIRDCDEIIVLERGKVVQRGTHEELWAVG 702
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
44-256 |
4.33e-19 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 84.29 E-value: 4.33e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 44 GLN-DVSLGIASGeifvIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGnDVIRLDANGLRELRRyKVSMVFQNfgllPHQ 122
Cdd:PRK13638 19 GLNlDFSLSPVTG----LVGANGCGKSTLFMNLSGLLRPQKGAVLWQG-KPLDYSKRGLLALRQ-QVATVFQD----PEQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TVL-----DNAAYALRTRGENRPDALDAARNWLTKVGLDGYgEHYPDE-LSGGMRQRVGLARALAADTDVLLMDEAFSAL 196
Cdd:PRK13638 89 QIFytdidSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHF-RHQPIQcLSHGQKKRVAIAGALVLQARYLLLDEPTAGL 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 197 DPLIRTEMQdQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSR 256
Cdd:PRK13638 168 DPAGRTQMI-AIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
44-253 |
5.80e-19 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 85.84 E-value: 5.80e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 44 GLNDVSLGIASGEIFVIMGLSGSGKSTLVRhfnrLI----EPTAGEIVIDGNDVirlDANGLRELRRYKVSMVFQN---F 116
Cdd:COG1129 267 VVRDVSFSVRAGEILGIAGLVGAGRTELAR----ALfgadPADSGEIRLDGKPV---RIRSPRDAIRAGIAYVPEDrkgE 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 117 GLLPHQTVLDNAAYA----LRTRG-ENRPDALDAARNWLTKVGLDGYGEHYP-DELSGGMRQRVGLARALAADTDVLLMD 190
Cdd:COG1129 340 GLVLDLSIRENITLAsldrLSRGGlLDRRRERALAEEYIKRLRIKTPSPEQPvGNLSGGNQQKVVLAKWLATDPKVLILD 419
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1528361663 191 E--------AfsaldpliRTEMQDQLLELqATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDI 253
Cdd:COG1129 420 EptrgidvgA--------KAEIYRLIREL-AAEGKAVIVISSELPELLGLSDRILVMREGRIVGELDREEA 481
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
45-244 |
8.77e-19 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 85.50 E-value: 8.77e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNdvirldanglrelrrYKVSMVFQNFGLLPHQTV 124
Cdd:COG0488 14 LDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPKG---------------LRIGYLPQEPPLDDDLTV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRGE--------------------------NRPDALDA------ARNWLTKVGLDGYGEHYP-DELSGGMR 171
Cdd:COG0488 79 LDTVLDGDAELRAleaeleeleaklaepdedlerlaelqEEFEALGGweaearAEEILSGLGFPEEDLDRPvSELSGGWR 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1528361663 172 QRVGLARALAADTDVLLMDEAFSALDplirTEMQDQLLELQATLSKTIVFITHD---LDealRIGDRIAILRDGTL 244
Cdd:COG0488 159 RRVALARALLSEPDLLLLDEPTNHLD----LESIEWLEEFLKNYPGTVLVVSHDryfLD---RVATRILELDRGKL 227
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
45-254 |
9.33e-19 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 83.30 E-value: 9.33e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRElrryKVSMVFQNFGLLPHQTV 124
Cdd:PRK10575 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR----KVAYLPQQLPAAEGMTV 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAY-------AL-RTRGENRPDALDAarnwLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSAL 196
Cdd:PRK10575 103 RELVAIgrypwhgALgRFGAADREKVEEA----ISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSAL 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1528361663 197 DplirTEMQDQLLELQATLSK----TIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDIL 254
Cdd:PRK10575 179 D----IAHQVDVLALVHRLSQerglTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
45-253 |
1.10e-18 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 85.10 E-value: 1.10e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRYkvsMVFQNFGLLPHQTV 124
Cdd:PRK15439 27 LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIY---LVPQEPLLFPNLSV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYAL--RTRGENRPDALDAARNwltkVGLDgygehyPDELSGGM----RQRVGLARALAADTDVLLMDEAFSALDP 198
Cdd:PRK15439 104 KENILFGLpkRQASMQKMKQLLAALG----CQLD------LDSSAGSLevadRQIVEILRGLMRDSRILILDEPTASLTP 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1528361663 199 LIRTEMQDQLLELQAtLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDI 253
Cdd:PRK15439 174 AETERLFSRIRELLA-QGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
48-261 |
2.19e-18 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 83.31 E-value: 2.19e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 48 VSLGIASGEIFVIMGLSGSGKSTLVRHF----NRLIEPTAGEIVIDGNDVIRLDANGLRELRRYKVSMVFQNfgllPhQT 123
Cdd:PRK15093 26 VSMTLTEGEIRGLVGESGSGKSLIAKAIcgvtKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE----P-QS 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 124 VLDNAAYALRTRGENRPDALDAARNW-------------LTKVGLDGYGE---HYPDELSGGMRQRVGLARALAADTDVL 187
Cdd:PRK15093 101 CLDPSERVGRQLMQNIPGWTYKGRWWqrfgwrkrraielLHRVGIKDHKDamrSFPYELTEGECQKVMIAIALANQPRLL 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 188 LMDEAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEY 261
Cdd:PRK15093 181 IADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTTPHHPY 254
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
48-249 |
3.07e-18 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 84.13 E-value: 3.07e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 48 VSLGIASGEIFVIMGLSGSGKSTLVrhfNRLIE--PTAGEIVIDGNDVIRLDANGLRElrryKVSMVFQNfGLLPHQTVL 125
Cdd:PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLL---NALLGflPYQGSLKINGIELRELDPESWRK----HLSWVGQN-PQLPHGTLR 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 126 DNAAYAlrtrgenRPDALDAA-RNWLTKVGLDGYGEHYPD-----------ELSGGMRQRVGLARALAADTDVLLMDEAF 193
Cdd:PRK11174 441 DNVLLG-------NPDASDEQlQQALENAWVSEFLPLLPQgldtpigdqaaGLSVGQAQRLALARALLQPCQLLLLDEPT 513
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1528361663 194 SALDplIRTEMQDQLLELQATLSKTIVFITHDLDEaLRIGDRIAILRDGTLVQVGT 249
Cdd:PRK11174 514 ASLD--AHSEQLVMQALNAASRRQTTLMVTHQLED-LAQWDQIWVMQDGQIVQQGD 566
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
42-258 |
1.37e-17 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 80.26 E-value: 1.37e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 42 NVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHF-NRLIEPTA-------GEIVIDGNDVIRLDANGLRELRRYKVSMVF 113
Cdd:PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALaGDLTGGGAprgarvtGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 114 QNFGLLPHQTVLDNAAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALA---------ADT 184
Cdd:PRK13547 94 PAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAqlwpphdaaQPP 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361663 185 DVLLMDEAFSALDplirTEMQDQLLELQATLSKT----IVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILsRPA 258
Cdd:PRK13547 174 RYLLLDEPTAALD----LAHQHRLLDTVRRLARDwnlgVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL-TPA 246
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
45-266 |
2.80e-17 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 81.11 E-value: 2.80e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDAnglRELRRYKVSMVFQNFGLLPHQTV 124
Cdd:PRK11288 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFAST---TAALAAGVAIIYQELHLVPEMTV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAY-ALRTRGE--NRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDplir 201
Cdd:PRK11288 97 AENLYLgQLPHKGGivNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLS---- 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361663 202 TEMQDQLLELQATL---SKTIVFITHDLDEALRIGDRIAILRDGTLVQvgTPDDILSRPADEYVRRFV 266
Cdd:PRK11288 173 AREIEQLFRVIRELraeGRVILYVSHRMEEIFALCDAITVFKDGRYVA--TFDDMAQVDRDQLVQAMV 238
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
46-253 |
4.08e-17 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 80.94 E-value: 4.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 46 NDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVirlDANGLrELRRyKVSMVFQNFGLLPHQTVL 125
Cdd:NF033858 283 DHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPV---DAGDI-ATRR-RVGYMSQAFSLYGELTVR 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 126 DNaaYALRTRGENRPDALDAAR--NWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRte 203
Cdd:NF033858 358 QN--LELHARLFHLPAAEIAARvaEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPVAR-- 433
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1528361663 204 mqDQLLELQATLSK----TIvFI-THDLDEALRIgDRIAILRDGTLVQVGTPDDI 253
Cdd:NF033858 434 --DMFWRLLIELSRedgvTI-FIsTHFMNEAERC-DRISLMHAGRVLASDTPAAL 484
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
45-257 |
4.19e-17 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 80.98 E-value: 4.19e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVirlDANGLRELRRykvsmvfqNFGLLPHQTV 124
Cdd:PTZ00243 1326 LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREI---GAYGLRELRR--------QFSMIPQDPV 1394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALrtrgeNRPDALDA--ARNW--LTKVGLDgygEHYPDELSG--------------GMRQRVGLARA-LAADTD 185
Cdd:PTZ00243 1395 LFDGTVRQ-----NVDPFLEAssAEVWaaLELVGLR---ERVASESEGidsrvleggsnysvGQRQLMCMARAlLKKGSG 1466
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1528361663 186 VLLMDEAFSALDPLIRTEMQDQLleLQATLSKTIVFITHDLDEALRIgDRIAILRDGTLVQVGTPDDILSRP 257
Cdd:PTZ00243 1467 FILMDEATANIDPALDRQIQATV--MSAFSAYTVITIAHRLHTVAQY-DKIIVMDHGAVAEMGSPRELVMNR 1535
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
45-250 |
4.89e-17 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 77.45 E-value: 4.89e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDangLRELRRykvsmvfqNFGLLPHQTV 124
Cdd:cd03369 24 LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIP---LEDLRS--------SLTIIPQDPT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LdnAAYALRTRgenrpdaldaarnwltkvgLDGYGEhYPDE--------------LSGGMRQRVGLARALAADTDVLLMD 190
Cdd:cd03369 93 L--FSGTIRSN-------------------LDPFDE-YSDEeiygalrvsegglnLSQGQRQLLCLARALLKRPRVLVLD 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361663 191 EAFSALD--------PLIRTEMQDQllelqatlskTIVFITHDLDEALRIgDRIAILRDGTLVQVGTP 250
Cdd:cd03369 151 EATASIDyatdaliqKTIREEFTNS----------TILTIAHRLRTIIDY-DKILVMDAGEVKEYDHP 207
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
45-247 |
4.89e-17 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 77.69 E-value: 4.89e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIE--PTAGEIVID----GNDVIRLDAnglrelrrykvsmvfqnfgL 118
Cdd:COG2401 46 LRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKgtPVAGCVDVPdnqfGREASLIDA-------------------I 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 119 LPHQTVLDnAAYALRTRGenrpdaLDAARNWLTKvgldgygehyPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDP 198
Cdd:COG2401 107 GRKGDFKD-AVELLNAVG------LSDAVLWLRR----------FKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDR 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1528361663 199 LIRTEMQDQLLELQATLSKTIVFITH--DLDEALrIGDRIAILRDGTLVQV 247
Cdd:COG2401 170 QTAKRVARNLQKLARRAGITLVVATHhyDVIDDL-QPDLLIFVGYGGVPEE 219
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
45-263 |
6.08e-17 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 80.41 E-value: 6.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLdanGLRELRRYkVSMVFQN--------- 115
Cdd:PLN03232 1252 LHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKF---GLTDLRRV-LSIIPQSpvlfsgtvr 1327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 116 FGLLPHQTVLDNAAYALRTRGENRpdalDAARNwlTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSA 195
Cdd:PLN03232 1328 FNIDPFSEHNDADLWEALERAHIK----DVIDR--NPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATAS 1401
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361663 196 LDplIRTEMQDQLLELQATLSKTIVFITHDLDEALRIgDRIAILRDGTLVQVGTPDDILSRPADEYVR 263
Cdd:PLN03232 1402 VD--VRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDC-DKILVLSSGQVLEYDSPQELLSRDTSAFFR 1466
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
45-260 |
6.57e-17 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 79.97 E-value: 6.57e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRlIEPTA---GEIVIDGNDvirLDANGLRELRRYKVSMVFQNFGLLPH 121
Cdd:PRK13549 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG-VYPHGtyeGEIIFEGEE---LQASNIRDTERAGIAIIHQELALVKE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 122 QTVLDNA--AYALRTRGENRPDALDA-ARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALdp 198
Cdd:PRK13549 97 LSVLENIflGNEITPGGIMDYDAMYLrAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL-- 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1528361663 199 lirTEMQ-DQLLELQATLSK---TIVFITHDLDEALRIGDRIAILRDGTlvQVGTpddilsRPADE 260
Cdd:PRK13549 175 ---TESEtAVLLDIIRDLKAhgiACIYISHKLNEVKAISDTICVIRDGR--HIGT------RPAAG 229
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
45-255 |
9.97e-17 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 79.78 E-value: 9.97e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLdanGLRELRRykvsmvfqNFGLLPHQTV 124
Cdd:PLN03130 1255 LHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKF---GLMDLRK--------VLGIIPQAPV 1323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAA--YALRTRGE-NRPD---ALDAA-------RNWLtkvGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDE 191
Cdd:PLN03130 1324 LFSGTvrFNLDPFNEhNDADlweSLERAhlkdvirRNSL---GLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDE 1400
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1528361663 192 AFSALDplIRTemqDQLleLQATL-----SKTIVFITHDLDEALRIgDRIAILRDGTLVQVGTPDDILS 255
Cdd:PLN03130 1401 ATAAVD--VRT---DAL--IQKTIreefkSCTMLIIAHRLNTIIDC-DRILVLDAGRVVEFDTPENLLS 1461
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
45-256 |
1.93e-16 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 76.87 E-value: 1.93e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRElrryKVSMVFQN--------- 115
Cdd:cd03288 37 LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS----RLSIILQDpilfsgsir 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 116 FGLLPHQTVLDNAAYalrtrgenrpDALDAA--RNWLTKV--GLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDE 191
Cdd:cd03288 113 FNLDPECKCTDDRLW----------EALEIAqlKNMVKSLpgGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDE 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1528361663 192 AFSALDplIRTEMQDQLLELQATLSKTIVFITHDLDEALRiGDRIAILRDGTLVQVGTPDDILSR 256
Cdd:cd03288 183 ATASID--MATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLLAQ 244
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
47-197 |
2.60e-16 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 75.30 E-value: 2.60e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 47 DVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVirldanglrELRRYKVSMVF---QNfGLLPHQT 123
Cdd:PRK13539 20 GLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI---------DDPDVAEACHYlghRN-AMKPALT 89
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1528361663 124 VLDNAAYALRTRGENRPDALDAarnwLTKVGLDGYgEHYP-DELSGGMRQRVGLARALAADTDVLLMDEAFSALD 197
Cdd:PRK13539 90 VAENLEFWAAFLGGEELDIAAA----LEAVGLAPL-AHLPfGYLSAGQKRRVALARLLVSNRPIWILDEPTAALD 159
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
42-243 |
3.13e-16 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 75.20 E-value: 3.13e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 42 NVGLNDVSLGIASGEIFVIMGLSGSGKSTLvrhFNRLI---EPTAGEIVIDG------------NDVIR--------LDA 98
Cdd:cd03250 18 SFTLKDINLEVPKGELVAIVGPVGSGKSSL---LSALLgelEKLSGSVSVPGsiayvsqepwiqNGTIRenilfgkpFDE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 99 nglrelRRYKvsmvfqnfgllphqTVLDnaAYALRTRGENRPDALdaarnwLTKVGLDGYGehypdeLSGGMRQRVGLAR 178
Cdd:cd03250 95 ------ERYE--------------KVIK--ACALEPDLEILPDGD------LTEIGEKGIN------LSGGQKQRISLAR 140
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1528361663 179 ALAADTDVLLMDEAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLdEALRIGDRIAILRDGT 243
Cdd:cd03250 141 AVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQL-QLLPHADQIVVLDNGR 204
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
45-224 |
5.32e-16 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 77.54 E-value: 5.32e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVI-DGNDVIRLDAnglrelRRYkvsmvfqnfglLPHQT 123
Cdd:COG4178 379 LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIARpAGARVLFLPQ------RPY-----------LPLGT 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 124 VLDNAAYALRTrgENRPDAldAARNWLTKVGLDGYGEHYPDE------LSGGMRQRVGLARALAADTDVLLMDEAFSALD 197
Cdd:COG4178 442 LREALLYPATA--EAFSDA--ELREALEAVGLGHLAERLDEEadwdqvLSLGEQQRLAFARLLLHKPDWLFLDEATSALD 517
|
170 180
....*....|....*....|....*....
gi 1528361663 198 PlirtEMQDQLLE-LQATLSK-TIVFITH 224
Cdd:COG4178 518 E----ENEAALYQlLREELPGtTVISVGH 542
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
45-257 |
6.86e-16 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 74.97 E-value: 6.86e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLG---------IASGEIFVIMGLSGSGKSTLVRHFNRLIePTAGEIVIDGNDVIRLDANGLRELRRY-------K 108
Cdd:PRK03695 3 LNDVAVStrlgplsaeVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAYlsqqqtpP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 109 VSM-VFQNFGL-LPHQTVLDNAAYALRtrgenrpdalDAARnwltKVGLDGYGEHYPDELSGGMRQRVGLA-------RA 179
Cdd:PRK03695 82 FAMpVFQYLTLhQPDKTRTEAVASALN----------EVAE----ALGLDDKLGRSVNQLSGGEWQRVRLAavvlqvwPD 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361663 180 LAADTDVLLMDEAFSALDPLIRTEMqDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRP 257
Cdd:PRK03695 148 INPAGQLLLLDEPMNSLDVAQQAAL-DRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPE 224
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
45-268 |
7.05e-16 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 75.24 E-value: 7.05e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNdvirldanglrelrrykVSMVFQNFGLLPHQTV 124
Cdd:PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-----------------VSVIAISAGLSGQLTG 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRGENRPDaLDAARNWLTKVGLDGYGEHYP-DELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTE 203
Cdd:PRK13546 103 IENIEFKMLCMGFKRKE-IKAMTPKIIEFSELGEFIYQPvKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQK 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1528361663 204 MQDQLLELQATlSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRpADEYVRRFVEK 268
Cdd:PRK13546 182 CLDKIYEFKEQ-NKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPK-YEAFLNDFKKK 244
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
48-198 |
1.04e-15 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 73.55 E-value: 1.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 48 VSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVirldaNGLRELRRYKVSMVFQNFGLLPHQTVLDN 127
Cdd:TIGR01189 19 LSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPL-----AEQRDEPHENILYLGHLPGLKPELSALEN 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1528361663 128 AAYALRTRGENRPDALDAarnwLTKVGLDGYgEHYP-DELSGGMRQRVGLARALAADTDVLLMDEAFSALDP 198
Cdd:TIGR01189 94 LHFWAAIHGGAQRTIEDA----LAAVGLTGF-EDLPaAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDK 160
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
45-243 |
1.06e-15 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 73.90 E-value: 1.06e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRRYKVSMVFQNFGLLpHQTV 124
Cdd:cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NATV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYAlRTRGENRPDALDAARNWLTKVGLDGYGEHYPD-----ELSGGMRQRVGLARALAADTDVLLMDEAFSALDPL 199
Cdd:cd03290 96 EENITFG-SPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIgergiNLSGGQRQRICVARALYQNTNIVFLDDPFSALDIH 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1528361663 200 IRTE-MQDQLLELQATLSKTIVFITHDLdEALRIGDRIAILRDGT 243
Cdd:cd03290 175 LSDHlMQEGILKFLQDDKRTLVLVTHKL-QYLPHADWIIAMKDGS 218
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
47-197 |
1.75e-15 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 72.91 E-value: 1.75e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 47 DVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELrrykvsmvfqnfgL-LPHQ--- 122
Cdd:PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDL-------------LyLGHQpgi 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 ----TVLDNAAYALRTRGENRPDALDAArnwLTKVGLDGYgEHYP-DELSGGMRQRVGLARALAADTDVLLMDEAFSALD 197
Cdd:PRK13538 86 ktelTALENLRFYQRLHGPGDDEALWEA---LAQVGLAGF-EDVPvRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
45-242 |
2.55e-15 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 75.15 E-value: 2.55e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVirlDANGLRELRRYKVSMVFQNFGLLPHQTV 124
Cdd:PRK10982 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEI---DFKSSKEALENGISMVHQELNLVLQRSV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDN---AAYALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALdplir 201
Cdd:PRK10982 91 MDNmwlGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL----- 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1528361663 202 TEMQ-DQLLELQATLSKT---IVFITHDLDEALRIGDRIAILRDG 242
Cdd:PRK10982 166 TEKEvNHLFTIIRKLKERgcgIVYISHKMEEIFQLCDEITILRDG 210
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
45-257 |
5.27e-15 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 74.36 E-value: 5.27e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDV--IRLDAnglrelRRYKVSMVFQNfGLLPHQ 122
Cdd:PRK10789 331 LENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLtkLQLDS------WRSRLAVVSQT-PFLFSD 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TVLDNAAYAlrtrgenRPDAL-----DAAR-------------NWLTKVGLDGYgehypdELSGGMRQRVGLARALAADT 184
Cdd:PRK10789 404 TVANNIALG-------RPDATqqeieHVARlasvhddilrlpqGYDTEVGERGV------MLSGGQKQRISIARALLLNA 470
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1528361663 185 DVLLMDEAFSALDPliRTEMQDQLLELQATLSKTIVFITHDLdEALRIGDRIAILRDGTLVQVGTPDDILSRP 257
Cdd:PRK10789 471 EILILDDALSAVDG--RTEHQILHNLRQWGEGRTVIISAHRL-SALTEASEILVMQHGHIAQRGNHDQLAQQS 540
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
45-251 |
6.17e-15 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 74.09 E-value: 6.17e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRlIEPTA---GEIVIDGNDvirLDANGLRELRRYKVSMVFQNFGLLPH 121
Cdd:TIGR02633 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHGtwdGEIYWSGSP---LKASNIRDTERAGIVIIHQELTLVPE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 122 QTVLDN--AAYALRTRGE--NRPDALDAARNWLTKVGLDGYGEHYP-DELSGGMRQRVGLARALAADTDVLLMDEAFSAL 196
Cdd:TIGR02633 93 LSVAENifLGNEITLPGGrmAYNAMYLRAKNLLRELQLDADNVTRPvGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1528361663 197 dplirTEMQDQ-LLELQATLSK---TIVFITHDLDEALRIGDRIAILRDGTlvQVGTPD 251
Cdd:TIGR02633 173 -----TEKETEiLLDIIRDLKAhgvACVYISHKLNEVKAVCDTICVIRDGQ--HVATKD 224
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
45-255 |
9.04e-15 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 74.21 E-value: 9.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLdanGLRELrRYKVSMVFQN--------- 115
Cdd:TIGR00957 1302 LRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKI---GLHDL-RFKITIIPQDpvlfsgslr 1377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 116 FGLLPHQTVLDNAAYA------LRTRGENRPDALDAARNwltkvglDGyGEHypdeLSGGMRQRVGLARALAADTDVLLM 189
Cdd:TIGR00957 1378 MNLDPFSQYSDEEVWWalelahLKTFVSALPDKLDHECA-------EG-GEN----LSVGQRQLVCLARALLRKTKILVL 1445
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 190 DEAFSALD--------PLIRTEMQDQllelqatlskTIVFITHDLDEALRIgDRIAILRDGTLVQVGTPDDILS 255
Cdd:TIGR00957 1446 DEATAAVDletdnliqSTIRTQFEDC----------TVLTIAHRLNTIMDY-TRVIVLDKGEVAEFGAPSNLLQ 1508
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
45-242 |
1.75e-14 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 72.73 E-value: 1.75e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVirlDANGLRELRRYKVSMVFQNFGLLPHQTV 124
Cdd:PRK10762 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEV---TFNGPKSSQEAGIGIIHQELNLIPQLTI 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNA----AYALRTRGENRPDALDAARNWLTKVGLDgYGEHYP-DELSGGMRQRVGLARALAADTDVLLMDEAFSALdpl 199
Cdd:PRK10762 97 AENIflgrEFVNRFGRIDWKKMYAEADKLLARLNLR-FSSDKLvGELSIGEQQMVEIAKVLSFESKVIIMDEPTDAL--- 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1528361663 200 irTEMQDQLL-----ELQATlSKTIVFITHDLDEALRIGDRIAILRDG 242
Cdd:PRK10762 173 --TDTETESLfrvirELKSQ-GRGIVYISHRLKEIFEICDDVTVFRDG 217
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
4-245 |
5.32e-14 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 69.67 E-value: 5.32e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 4 IDVRHVYKLFGPEAAHPRVLDLLRAGKRKADVLSETgcnvgLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTA 83
Cdd:cd03267 1 IEVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEA-----LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTS 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 84 GEIVIDGNDVIRldaNGLRELRRYKVSM-----------VFQNFGLLPHQTVLDNAAYalRTRGENRPDALDAARNWLTK 152
Cdd:cd03267 76 GEVRVAGLVPWK---RRKKFLRRIGVVFgqktqlwwdlpVIDSFYLLAAIYDLPPARF--KKRLDELSELLDLEELLDTP 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 153 VgldgygehypDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRI 232
Cdd:cd03267 151 V----------RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEAL 220
|
250
....*....|...
gi 1528361663 233 GDRIAILRDGTLV 245
Cdd:cd03267 221 ARRVLVIDKGRLL 233
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
45-248 |
1.43e-13 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 68.76 E-value: 1.43e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVirldangLRELRRYKVSMVFQN------FGL 118
Cdd:PRK15056 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPT-------RQALQKNLVAYVPQSeevdwsFPV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 119 LPHQTVL----DNAAYALRTRGENRpDALDAArnwLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFS 194
Cdd:PRK15056 96 LVEDVVMmgryGHMGWLRRAKKRDR-QIVTAA---LARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFT 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 195 ALDPLIRTEMQDQLLELQATlSKTIVFITHDLDEALRIGDRIAILRdGTLVQVG 248
Cdd:PRK15056 172 GVDVKTEARIISLLRELRDE-GKTMLVSTHNLGSVTEFCDYTVMVK-GTVLASG 223
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
50-262 |
1.48e-13 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 70.43 E-value: 1.48e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 50 LGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRldanglrelrryKVSMVFQNFGLLPHQTVLDNAA 129
Cdd:TIGR01257 1960 VGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT------------NISDVHQNMGYCPQFDAIDDLL 2027
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 130 --------YAlRTRGENRPDaLDAARNW-LTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLI 200
Cdd:TIGR01257 2028 tgrehlylYA-RLRGVPAEE-IEKVANWsIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQA 2105
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1528361663 201 RTEMQDQLLELQATlSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSRPADEYV 262
Cdd:TIGR01257 2106 RRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYI 2166
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
44-255 |
1.54e-13 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 70.44 E-value: 1.54e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 44 GLNDVSLGIASGEIFVIMGLSGSGKSTLVrhFNrliepTAGEIVIDGNDVIRLDANGLRELrrykVSMVFQNfGLLPHQT 123
Cdd:PTZ00265 1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTV--FK-----NSGKILLDGVDICDYNLKDLRNL----FSIVSQE-PMLFNMS 1311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 124 VLDNAAYAlrtrgenRPDA-LDAARNWLTKVGLDGYGEHYPDE-----------LSGGMRQRVGLARALAADTDVLLMDE 191
Cdd:PTZ00265 1312 IYENIKFG-------KEDAtREDVKRACKFAAIDEFIESLPNKydtnvgpygksLSGGQKQRIAIARALLREPKILLLDE 1384
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1528361663 192 AFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLdEALRIGDRIAIL----RDGTLVQV-GTPDDILS 255
Cdd:PTZ00265 1385 ATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI-ASIKRSDKIVVFnnpdRTGSFVQAhGTHEELLS 1452
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
48-251 |
1.57e-13 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 70.21 E-value: 1.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 48 VSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGndvIRLDANGLRELRRyKVSMVFQNFGLLPHqtVLdn 127
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDG---QPVTADNREAYRQ-LFSAVFSDFHLFDR--LL-- 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 128 aayalrtrGENRPDALDAARNWLTKVGLDG----YGEHYPD-ELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRT 202
Cdd:COG4615 423 --------GLDGEADPARARELLERLELDHkvsvEDGRFSTtDLSQGQRKRLALLVALLEDRPILVFDEWAADQDPEFRR 494
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1528361663 203 EMQDQLL-ELQAtLSKTIVFITHDlDEALRIGDRIAILRDGTLVQVGTPD 251
Cdd:COG4615 495 VFYTELLpELKA-RGKTVIAISHD-DRYFDLADRVLKMDYGKLVELTGPA 542
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
45-246 |
1.88e-13 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 69.82 E-value: 1.88e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVrhfNRL--IEPTA---GEIVIDGndvirldanglrELRRYK---------VS 110
Cdd:NF040905 17 LDDVNLSVREGEIHALCGENGAGKSTLM---KVLsgVYPHGsyeGEILFDG------------EVCRFKdirdsealgIV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 111 MVFQNFGLLPHQTVLDNA--AYALRTRGE-NRPDALDAARNWLTKVGLDgygEHyPDELSG----GMRQRVGLARALAAD 183
Cdd:NF040905 82 IIHQELALIPYLSIAENIflGNERAKRGViDWNETNRRARELLAKVGLD---ES-PDTLVTdigvGKQQLVEIAKALSKD 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1528361663 184 TDVLLMDEAFSALDplirTEMQDQLLELQATLSK---TIVFITHDLDEALRIGDRIAILRDGTLVQ 246
Cdd:NF040905 158 VKLLILDEPTAALN----EEDSAALLDLLLELKAqgiTSIIISHKLNEIRRVADSITVLRDGRTIE 219
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
45-263 |
2.33e-13 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 67.60 E-value: 2.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANglrELRRYKVSMVFQNFGLLPHQTV 124
Cdd:PRK11614 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTA---KIMREAVAIVPEGRRVFSRMTV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAA----YALRTRGENRPDALDAARNWLTKVGLDGYGEhypdeLSGGMRQRVGLARALAADTDVLLMDEAFSALDPLI 200
Cdd:PRK11614 98 EENLAmggfFAERDQFQERIKWVYELFPRLHERRIQRAGT-----MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPII 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1528361663 201 RTEMQDQLLELQATlSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILsrpADEYVR 263
Cdd:PRK11614 173 IQQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALL---ANEAVR 231
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
45-251 |
4.80e-13 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 67.01 E-value: 4.80e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVrhfnRLI------EPTAGEIVIDGNDVIRLDANglrELRRYKVSMVFQ---- 114
Cdd:COG0396 16 LKGVNLTIKPGEVHAIMGPNGSGKSTLA----KVLmghpkyEVTSGSILLDGEDILELSPD---ERARAGIFLAFQypve 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 115 -------NFgllphqtvLDNAAYALRTRGENRPDALDAARNWLTKVGLD-GYGEHYPDE-LSGGMRQRVGLARALAADTD 185
Cdd:COG0396 89 ipgvsvsNF--------LRTALNARRGEELSAREFLKLLKEKMKELGLDeDFLDRYVNEgFSGGEKKRNEILQMLLLEPK 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361663 186 VLLMDEAFSALD-----PLIRT--EMQDQllelqatlSKTIVFITH-----DLDEAlrigDRIAILRDGTLVQVGTPD 251
Cdd:COG0396 161 LAILDETDSGLDidalrIVAEGvnKLRSP--------DRGILIITHyqrilDYIKP----DFVHVLVDGRIVKSGGKE 226
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
45-254 |
8.44e-13 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 67.78 E-value: 8.44e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIdGNDVirldanglrelrryKVSMVFQNFGLL-PHQT 123
Cdd:COG0488 331 LDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL-GETV--------------KIGYFDQHQEELdPDKT 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 124 VLDNaayaLRTRGENRPDAldAARNWL-----------TKVGldgygehypdELSGGMRQRVGLARALAADTDVLLMDEA 192
Cdd:COG0488 396 VLDE----LRDGAPGGTEQ--EVRGYLgrflfsgddafKPVG----------VLSGGEKARLALAKLLLSPPNVLLLDEP 459
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1528361663 193 FSALDPlirtEMQDQLLELQATLSKTIVFITHD---LDealRIGDRIAILRDGTLVQ-VGTPDDIL 254
Cdd:COG0488 460 TNHLDI----ETLEALEEALDDFPGTVLLVSHDryfLD---RVATRILEFEDGGVREyPGGYDDYL 518
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
45-249 |
1.02e-12 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 66.42 E-value: 1.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGndvirldanglrelrryKVSMVFQNFGLLPhQTV 124
Cdd:cd03291 53 LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-----------------RISFSSQFSWIMP-GTI 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALrTRGENR-----------PDALDAARNWLTKVGLDGYgehypdELSGGMRQRVGLARALAADTDVLLMDEAF 193
Cdd:cd03291 115 KENIIFGV-SYDEYRyksvvkacqleEDITKFPEKDNTVLGEGGI------TLSGGQRARISLARAVYKDADLYLLDSPF 187
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1528361663 194 SALDPLIRTEMQDQ-LLELQAtlSKTIVFITHDLdEALRIGDRIAILRDGTLVQVGT 249
Cdd:cd03291 188 GYLDVFTEKEIFEScVCKLMA--NKTRILVTSKM-EHLKKADKILILHEGSSYFYGT 241
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
36-242 |
2.64e-12 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 64.74 E-value: 2.64e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 36 LSETGCNVGLNdVSLG-IASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDV------IRLDANG-LRELRRY 107
Cdd:cd03237 6 MKKTLGEFTLE-VEGGsISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVsykpqyIKADYEGtVRDLLSS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 108 KVsmvfQNFGLLPHqtvldnaayalrtrgenrpdaldaarnWLTKV----GLDGYGEHYPDELSGGMRQRVGLARALAAD 183
Cdd:cd03237 85 IT----KDFYTHPY---------------------------FKTEIakplQIEQILDREVPELSGGELQRVAIAACLSKD 133
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1528361663 184 TDVLLMDEAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIaILRDG 242
Cdd:cd03237 134 ADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRL-IVFEG 191
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
45-249 |
3.56e-12 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 66.47 E-value: 3.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGndvirldanglrelrryKVSMVFQNFGLLPhQTV 124
Cdd:TIGR01271 442 LKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-----------------RISFSPQTSWIMP-GTI 503
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALrTRGENRPDALDAARNWLTKVGLDGYGEHYP-----DELSGGMRQRVGLARALAADTDVLLMDEAFSALDPL 199
Cdd:TIGR01271 504 KDNIIFGL-SYDEYRYTSVIKACQLEEDIALFPEKDKTVlgeggITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVV 582
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1528361663 200 IRTEMQDQLLeLQATLSKTIVFITHDLdEALRIGDRIAILRDGTLVQVGT 249
Cdd:TIGR01271 583 TEKEIFESCL-CKLMSNKTRILVTSKL-EHLKKADKILLLHEGVCYFYGT 630
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
45-255 |
4.34e-12 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 64.48 E-value: 4.34e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVrhfNRL--IEPTAGEIVIDGNDVIRLDANGLRELRRYkvsmvfqnfglLPHQ 122
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLL---ARMagLLPGQGEILLNGRPLSDWSAAELARHRAY-----------LSQQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TVLDNA----AY-ALRTRGENRPDALDAARNWLT-KVGLDGYGEHYPDELSGGMRQRVGLARALA-------ADTDVLLM 189
Cdd:COG4138 78 QSPPFAmpvfQYlALHQPAGASSEAVEQLLAQLAeALGLEDKLSRPLTQLSGGEWQRVRLAAVLLqvwptinPEGQLLLL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1528361663 190 DEAFSALDplIRTE-MQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILS 255
Cdd:COG4138 158 DEPMNSLD--VAQQaALDRLLRELCQQGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEVMT 222
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
45-243 |
4.85e-12 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 62.08 E-value: 4.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNdvirldanglrelrrykvsmvfqnfgllphqtv 124
Cdd:cd03221 16 LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--------------------------------- 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 ldnaayalrtrgenrpdaldaarnwlTKVGldgygehYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDplirTEM 204
Cdd:cd03221 63 --------------------------VKIG-------YFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLD----LES 105
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1528361663 205 QDQLLELQATLSKTIVFITHD---LDealRIGDRIAILRDGT 243
Cdd:cd03221 106 IEALEEALKEYPGTVILVSHDryfLD---QVATKIIELEDGK 144
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
45-256 |
7.63e-12 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 65.35 E-value: 7.63e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDG------------NDVIR---LDANGLRElRRYKV 109
Cdd:TIGR00957 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGsvayvpqqawiqNDSLReniLFGKALNE-KYYQQ 732
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 110 SMvfQNFGLLPHQTVLDnaayalrtrGENRpdaldaarnwlTKVGLDGYgehypdELSGGMRQRVGLARALAADTDVLLM 189
Cdd:TIGR00957 733 VL--EACALLPDLEILP---------SGDR-----------TEIGEKGV------NLSGGQKQRVSLARAVYSNADIYLF 784
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361663 190 DEAFSALDPLIRTEMQDQLLELQATLS-KTIVFITHDLDEALRIgDRIAILRDGTLVQVGTPDDILSR 256
Cdd:TIGR00957 785 DDPLSAVDAHVGKHIFEHVIGPEGVLKnKTRILVTHGISYLPQV-DVIIVMSGGKISEMGSYQELLQR 851
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
48-197 |
1.07e-11 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 62.51 E-value: 1.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 48 VSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELRrykvsmvfqnfgLLPHQTVLDN 127
Cdd:cd03231 19 LSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLL------------YLGHAPGIKT 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1528361663 128 AAYALRTRGENRPD-ALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALD 197
Cdd:cd03231 87 TLSVLENLRFWHADhSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALD 157
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
45-224 |
1.51e-11 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 61.40 E-value: 1.51e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVI-DGNDVIrldanglrelrrykvsmvfqnfgLLPHQT 123
Cdd:cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMpEGEDLL-----------------------FLPQRP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 124 VLdnaayalrTRGENRpDALdaarnwltkvgldgygeHYP--DELSGGMRQRVGLARALAADTDVLLMDEAFSALDPlir 201
Cdd:cd03223 74 YL--------PLGTLR-EQL-----------------IYPwdDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE--- 124
|
170 180
....*....|....*....|...
gi 1528361663 202 tEMQDQLLELQATLSKTIVFITH 224
Cdd:cd03223 125 -ESEDRLYQLLKELGITVISVGH 146
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
46-245 |
1.61e-11 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 63.78 E-value: 1.61e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 46 NDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNdviRLDANGLRELRRYKVSMVFQNF---GLLPHQ 122
Cdd:PRK11288 270 EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGK---PIDIRSPRDAIRAGIMLCPEDRkaeGIIPVH 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TVLDNaaYALRTRGENRPdaldaARNWLTKVGLDGYGEHY----------PDE----LSGGMRQRVGLARALAADTDVLL 188
Cdd:PRK11288 347 SVADN--INISARRHHLR-----AGCLINNRWEAENADRFirslniktpsREQlimnLSGGNQQKAILGRWLSEDMKVIL 419
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1528361663 189 MDEAFSALDPLIRTEMQDQLLELqATLSKTIVFITHDLDEALRIGDRIAILRDGTLV 245
Cdd:PRK11288 420 LDEPTRGIDVGAKHEIYNVIYEL-AAQGVAVLFVSSDLPEVLGVADRIVVMREGRIA 475
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
27-257 |
1.95e-11 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 64.03 E-value: 1.95e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 27 RAGKRKADVLSETGCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDgndvirldanglrelrr 106
Cdd:PTZ00243 658 KTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE----------------- 720
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 107 ykvsmvfQNFGLLPHQ------TVLDNAAYALRTRGENRPDA-----LDAARNWL-----TKVGLDGYgehypdELSGGM 170
Cdd:PTZ00243 721 -------RSIAYVPQQawimnaTVRGNILFFDEEDAARLADAvrvsqLEADLAQLgggleTEIGEKGV------NLSGGQ 787
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 171 RQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQDQLLeLQATLSKTIVFITHDLdEALRIGDRIAILRDGTLVQVGTP 250
Cdd:PTZ00243 788 KARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECF-LGALAGKTRVLATHQV-HVVPRADYVVALGDGRVEFSGSS 865
|
....*..
gi 1528361663 251 DDILSRP 257
Cdd:PTZ00243 866 ADFMRTS 872
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
4-199 |
2.05e-11 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 64.16 E-value: 2.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 4 IDVRHVYKLFgPEAAHPRVLDLlragkrkaDVLSETGCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEpTA 83
Cdd:TIGR01271 1203 IENPHAQKCW-PSGGQMDVQGL--------TAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TE 1272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 84 GEIVIDGndvIRLDANGLRELRRykvsmvfqNFGLLPHQTVLDNAAYALRtrgenrpdaLDAARNW--------LTKVGL 155
Cdd:TIGR01271 1273 GEIQIDG---VSWNSVTLQTWRK--------AFGVIPQKVFIFSGTFRKN---------LDPYEQWsdeeiwkvAEEVGL 1332
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1528361663 156 DGYGEHYPDE-----------LSGGMRQRVGLARALAADTDVLLMDEAFSALDPL 199
Cdd:TIGR01271 1333 KSVIEQFPDKldfvlvdggyvLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPV 1387
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
47-241 |
2.14e-11 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 63.89 E-value: 2.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 47 DVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDgndvirlDANGLRELR----RYKVSMVFQNfGLLPHQ 122
Cdd:PTZ00265 403 DLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIIN-------DSHNLKDINlkwwRSKIGVVSQD-PLLFSN 474
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TVLDNAAYALRT-------------------RGENRPDA---------------------LDAARNWLT----------- 151
Cdd:PTZ00265 475 SIKNNIKYSLYSlkdlealsnyynedgndsqENKNKRNScrakcagdlndmsnttdsnelIEMRKNYQTikdsevvdvsk 554
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 152 KVGLDGYGEHYPD-----------ELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQDQLLELQATLSKTIV 220
Cdd:PTZ00265 555 KVLIHDFVSALPDkyetlvgsnasKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITI 634
|
250 260
....*....|....*....|.
gi 1528361663 221 FITHDLdEALRIGDRIAILRD 241
Cdd:PTZ00265 635 IIAHRL-STIRYANTIFVLSN 654
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
22-251 |
2.49e-11 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 63.97 E-value: 2.49e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 22 VLDLLRAGKRKADVLSETGCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRhfnrliePTAGEIV---IDGNDVIRLDA 98
Cdd:TIGR00956 54 LLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK-------TIASNTDgfhIGVEGVITYDG 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 99 NGLREL-RRYKVSMVF--QNFGLLPHQTVLDNAAYALRTRG-ENRPDALD--AARNWLTKVGLDGYG-EHYPDE------ 165
Cdd:TIGR00956 127 ITPEEIkKHYRGDVVYnaETDVHFPHLTVGETLDFAARCKTpQNRPDGVSreEYAKHIADVYMATYGlSHTRNTkvgndf 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 166 ---LSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQdQLLELQATLSKTIVFIT--HDLDEALRIGDRIAILR 240
Cdd:TIGR00956 207 vrgVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFI-RALKTSANILDTTPLVAiyQCSQDAYELFDKVIVLY 285
|
250
....*....|.
gi 1528361663 241 DGTLVQVGTPD 251
Cdd:TIGR00956 286 EGYQIYFGPAD 296
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
45-255 |
5.15e-11 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 62.83 E-value: 5.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLvrhfnrlIEPTAGEI--VIDGNDVIRLDANGLRElrrykVSMVFqnfgllpHQ 122
Cdd:PLN03130 633 LSNINLDVPVGSLVAIVGSTGEGKTSL-------ISAMLGELppRSDASVVIRGTVAYVPQ-----VSWIF-------NA 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TVLDNAAYAL---RTRGENRPDALDAARNW-------LTKVGLDGYgehypdELSGGMRQRVGLARALAADTDVLLMDEA 192
Cdd:PLN03130 694 TVRDNILFGSpfdPERYERAIDVTALQHDLdllpggdLTEIGERGV------NISGGQKQRVSMARAVYSNSDVYIFDDP 767
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1528361663 193 FSALDPLIRTEMQDQLL--ELQatlSKTIVFITHDLDEALRIgDRIAILRDGTLVQVGTPDDILS 255
Cdd:PLN03130 768 LSALDAHVGRQVFDKCIkdELR---GKTRVLVTNQLHFLSQV-DRIILVHEGMIKEEGTYEELSN 828
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
44-244 |
8.77e-11 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 61.61 E-value: 8.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 44 GLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVirldaNGLRELRRYKVSMVF-----QNFGL 118
Cdd:PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEI-----NALSTAQRLARGLVYlpedrQSSGL 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 119 LPHQTVLDNA-AYALRTRGENRPDALDAARnwltkvgLDGY----------GEHYPDELSGGMRQRVGLARALAADTDVL 187
Cdd:PRK15439 353 YLDAPLAWNVcALTHNRRGFWIKPARENAV-------LERYrralnikfnhAEQAARTLSGGNQQKVLIAKCLEASPQLL 425
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1528361663 188 LMDEAFSALDPLIRTEMQdQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTL 244
Cdd:PRK15439 426 IVDEPTRGVDVSARNDIY-QLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
49-256 |
9.75e-11 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 61.57 E-value: 9.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 49 SLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRELrrykVSMVFQ------------NF 116
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKL----VSDEWQrnntdmlspgedDT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 117 GLLPHQTVLDNaayalrTRGENRPDALDAarnwltKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSAL 196
Cdd:PRK10938 99 GRTTAEIIQDE------VKDPARCEQLAQ------QFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGL 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1528361663 197 DplirTEMQDQLLELQATLSK---TIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSR 256
Cdd:PRK10938 167 D----VASRQQLAELLASLHQsgiTLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
40-255 |
1.00e-10 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 60.64 E-value: 1.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 40 GCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEpTAGEIVIDGndvIRLDANGLRELRRykvsmvfqNFGLL 119
Cdd:cd03289 15 GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDG---VSWNSVPLQKWRK--------AFGVI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 120 PHQTVLDNAAYALRtrgenrpdaLDAARNW--------LTKVGLDGYGEHYPDE-----------LSGGMRQRVGLARAL 180
Cdd:cd03289 83 PQKVFIFSGTFRKN---------LDPYGKWsdeeiwkvAEEVGLKSVIEQFPGQldfvlvdggcvLSHGHKQLMCLARSV 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1528361663 181 AADTDVLLMDEAFSALDPLIRTEMQDQLleLQATLSKTIVFITHDLdEALRIGDRIAILRDGTLVQVGTPDDILS 255
Cdd:cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTL--KQAFADCTVILSEHRI-EAMLECQRFLVIEENKVRQYDSIQKLLN 225
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
45-245 |
2.16e-10 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 60.73 E-value: 2.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVI-RLD---------------ANGLRELRRYk 108
Cdd:PRK11147 19 LDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVaRLQqdpprnvegtvydfvAEGIEEQAEY- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 109 vsmvFQNFGLLPHQTVLDNAAYALRtRGENRPDALDAARNW---------LTKVGLDgygehyPD----ELSGGMRQRVG 175
Cdd:PRK11147 98 ----LKRYHDISHLVETDPSEKNLN-ELAKLQEQLDHHNLWqlenrinevLAQLGLD------PDaalsSLSGGWLRKAA 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 176 LARALAADTDVLLMDEAFSALDplirTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLV 245
Cdd:PRK11147 167 LGRALVSNPDVLLLDEPTNHLD----IETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLV 232
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
45-226 |
2.39e-10 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 59.36 E-value: 2.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGndvirldanGLRelrrykvsmvfqnFGLLPHQTV 124
Cdd:PRK09544 20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG---------KLR-------------IGYVPQKLY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LD-----NAAYALRTR-GENRPDALDAarnwLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDP 198
Cdd:PRK09544 78 LDttlplTVNRFLRLRpGTKKEDILPA----LKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDV 153
|
170 180
....*....|....*....|....*...
gi 1528361663 199 LIRTEMQDQLLELQATLSKTIVFITHDL 226
Cdd:PRK09544 154 NGQVALYDLIDQLRRELDCAVLMVSHDL 181
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
45-251 |
2.76e-10 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 58.31 E-value: 2.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLvrhFNRLI-----EPTAGEIVIDGNDVIRLDANglrELRRYKVSMVFQNFGLL 119
Cdd:cd03217 16 LKGVNLTIKKGEVHALMGPNGSGKSTL---AKTIMghpkyEVTEGEILFKGEDITDLPPE---ERARLGIFLAFQYPPEI 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 120 PHQTVLDnaayALRTRGENrpdaldaarnwltkvgldgygehypdeLSGGMRQRVGLARALAADTDVLLMDEAFSALDpL 199
Cdd:cd03217 90 PGVKNAD----FLRYVNEG---------------------------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLD-I 137
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1528361663 200 IRTEMQDQLLELQATLSKTIVFITH-----DLDEAlrigDRIAILRDGTLVQVGTPD 251
Cdd:cd03217 138 DALRLVAEVINKLREEGKSVLIITHyqrllDYIKP----DRVHVLYDGRIVKSGDKE 190
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
52-198 |
5.36e-10 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 57.94 E-value: 5.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 52 IASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDanglrelRRYKVSMVFQNFGLLPHQTVLDNAAYA 131
Cdd:PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD-------RSRFMAYLGHLPGLKADLSTLENLHFL 106
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1528361663 132 LRTRGEnRPDALDAarNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDP 198
Cdd:PRK13543 107 CGLHGR-RAKQMPG--SALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDL 170
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
45-249 |
6.71e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 59.60 E-value: 6.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLvrhfnrlIEPTAGEI--VIDGNDVIRLDANGLRElrrykVSMVFqnfgllpHQ 122
Cdd:PLN03232 633 LSDINLEIPVGSLVAIVGGTGEGKTSL-------ISAMLGELshAETSSVVIRGSVAYVPQ-----VSWIF-------NA 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 123 TVLDNAAYALRTRGENRPDALDA----------ARNWLTKVGLDGYgehypdELSGGMRQRVGLARALAADTDVLLMDEA 192
Cdd:PLN03232 694 TVRENILFGSDFESERYWRAIDVtalqhdldllPGRDLTEIGERGV------NISGGQKQRVSMARAVYSNSDIYIFDDP 767
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1528361663 193 FSALDPLIRTEMQDQLL--ELQAtlsKTIVFITHDLdEALRIGDRIAILRDGTLVQVGT 249
Cdd:PLN03232 768 LSALDAHVAHQVFDSCMkdELKG---KTRVLVTNQL-HFLPLMDRIILVSEGMIKEEGT 822
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
46-255 |
6.89e-10 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 59.03 E-value: 6.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 46 NDVSLGIASGEIFVIMGLSGSGKSTLVrhfNRL--IEPTA-GEIVIDGNDV-IR--LDA--NGL---RELRRYkvSMVFQ 114
Cdd:PRK09700 280 RDISFSVCRGEILGFAGLVGSGRTELM---NCLfgVDKRAgGEIRLNGKDIsPRspLDAvkKGMayiTESRRD--NGFFP 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 115 NFGLLPHQTV---LDNAAYALRTRGENRPDALDAARNWLTKVGLDGYG-EHYPDELSGGMRQRVGLARALAADTDVLLMD 190
Cdd:PRK09700 355 NFSIAQNMAIsrsLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSvNQNITELSGGNQQKVLISKWLCCCPEVIIFD 434
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1528361663 191 EAFSALDPLIRTEMQDQLLELqATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILS 255
Cdd:PRK09700 435 EPTRGIDVGAKAEIYKVMRQL-ADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDDMS 498
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
54-251 |
8.62e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 56.23 E-value: 8.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 54 SGEIFVIMGLSGSGKSTLVRHFnrlieptAGEIVIDGNDVIRLDANGLRELRRYKVSMVfqnfgllphqtvldnaayalr 133
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARAL-------ARELGPPGGGVIYIDGEDILEEVLDQLLLI--------------------- 52
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 134 trgenrpdaldaarnwltkvgldgYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDP-----LIRTEMQDQL 208
Cdd:smart00382 53 ------------------------IVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAeqealLLLLEELRLL 108
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1528361663 209 LELQATLSKTIVFITHDLDEalrIGDRIAILRDGTLVQVGTPD 251
Cdd:smart00382 109 LLLKSEKNLTVILTTNDEKD---LGPALLRRRFDRRIVLLLIL 148
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
45-244 |
1.26e-09 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 58.30 E-value: 1.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRH-FNRLIEPTAGEIVIDGNDV-IRLDANGLRElrryKVSMVFQN---FGLL 119
Cdd:TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQAlFGAYPGKFEGNVFINGKPVdIRNPAQAIRA----GIAMVPEDrkrHGIV 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 120 PHQTVLDNAAYALRTR--GENRPDA---LDAARNWLTKVGLDGYGEHYP-DELSGGMRQRVGLARALAADTDVLLMDEAF 193
Cdd:TIGR02633 352 PILGVGKNITLSVLKSfcFKMRIDAaaeLQIIGSAIQRLKVKTASPFLPiGRLSGGNQQKAVLAKMLLTNPRVLILDEPT 431
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1528361663 194 SALDPLIRTEMQdQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTL 244
Cdd:TIGR02633 432 RGVDVGAKYEIY-KLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
45-256 |
1.56e-09 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 58.19 E-value: 1.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLRElrryKVSMVFQNfgllphQTV 124
Cdd:PRK10790 357 LQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQ----GVAMVQQD------PVV 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRGENrpdaLDAARNW--LTKVGLDGYGEHYPD-----------ELSGGMRQRVGLARALAADTDVLLMDE 191
Cdd:PRK10790 427 LADTFLANVTLGRD----ISEEQVWqaLETVQLAELARSLPDglytplgeqgnNLSVGQKQLLALARVLVQTPQILILDE 502
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361663 192 AFSALDPLIRTEMQDQLLELQAtlSKTIVFITHDLD---EAlrigDRIAILRDGTLVQVGTPDDILSR 256
Cdd:PRK10790 503 ATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRLStivEA----DTILVLHRGQAVEQGTHQQLLAA 564
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
45-251 |
1.63e-09 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 56.89 E-value: 1.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTL----VRHFNRLIepTAGEIVIDGNDVIRLDANglrELRRYKVSMVFQNFGLLP 120
Cdd:TIGR01978 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLsktiAGHPSYEV--TSGTILFKGQDLLELEPD---ERARAGLFLAFQYPEEIP 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 121 HQTVLD--NAAYALRtRGENRPDALDAA------RNWLTKVGLDG-YGEHYPDE-LSGGMRQRVGLARALAADTDVLLMD 190
Cdd:TIGR01978 91 GVSNLEflRSALNAR-RSARGEEPLDLLdfekllKEKLALLDMDEeFLNRSVNEgFSGGEKKRNEILQMALLEPKLAILD 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1528361663 191 EAFSALDpLIRTEMQDQLLELQATLSKTIVFITHDldeaLRIGDRIA-----ILRDGTLVQVGTPD 251
Cdd:TIGR01978 170 EIDSGLD-IDALKIVAEGINRLREPDRSFLIITHY----QRLLNYIKpdyvhVLLDGRIVKSGDVE 230
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
45-251 |
1.98e-09 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 57.75 E-value: 1.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSlGIA-SGEIFVIMGLSGSGKSTLVrhfNRLIEPTAGEIVIDGNDVIRLDANGLRELRRyKVSMVFQNFGLLPHQT 123
Cdd:TIGR00955 41 LKNVS-GVAkPGELLAVMGSSGAGKTTLM---NALAFRSPKGVKGSGSVLLNGMPIDAKEMRA-ISAYVQQDDLFIPTLT 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 124 VLDNAAYALRTRGENRPDA---------------LDAARNwlTKVGLDGYGEhypdELSGGMRQRVGLARALAADTDVLL 188
Cdd:TIGR00955 116 VREHLMFQAHLRMPRRVTKkekrervdevlqalgLRKCAN--TRIGVPGRVK----GLSGGERKRLAFASELLTDPPLLF 189
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 189 MDEAFSALDPLIRTEMQDQLLELqATLSKTIVFITHD-LDEALRIGDRIAILRDGTLVQVGTPD 251
Cdd:TIGR00955 190 CDEPTSGLDSFMAYSVVQVLKGL-AQKGKTIICTIHQpSSELFELFDKIILMAEGRVAYLGSPD 252
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
4-224 |
5.31e-09 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 56.43 E-value: 5.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 4 IDVRHVYKLFGPEAAHPRVLDLLRAGKRKADVLSETGCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPT- 82
Cdd:PLN03211 43 MDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNn 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 83 -AGEIVIDGNDVIRldanglRELRRykVSMVFQNFGLLPHQTVLDNAAYA--LR-TRGENRPDALDAARNWLTKVGLDG- 157
Cdd:PLN03211 123 fTGTILANNRKPTK------QILKR--TGFVTQDDILYPHLTVRETLVFCslLRlPKSLTKQEKILVAESVISELGLTKc 194
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1528361663 158 ----YGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQDQLLELqATLSKTIVFITH 224
Cdd:PLN03211 195 entiIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSL-AQKGKTIVTSMH 264
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
45-228 |
7.92e-09 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 56.05 E-value: 7.92e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNdvirldanglrelrrykVSMVFQNFGLLPHQTV 124
Cdd:PRK13545 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGS-----------------AALIAISSGLNGQLTG 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDNAAYALRTRG-------ENRPDALDAARnwltkvglDGYGEHYP-DELSGGMRQRVGLARALAADTDVLLMDEAFSAL 196
Cdd:PRK13545 103 IENIELKGLMMGltkekikEIIPEIIEFAD--------IGKFIYQPvKTYSSGMKSRLGFAISVHINPDILVIDEALSVG 174
|
170 180 190
....*....|....*....|....*....|..
gi 1528361663 197 DPLIRTEMQDQLLELQATlSKTIVFITHDLDE 228
Cdd:PRK13545 175 DQTFTKKCLDKMNEFKEQ-GKTIFFISHSLSQ 205
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
45-199 |
2.70e-08 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 52.64 E-value: 2.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIrldanglRELRRYKVSMVF--QNFGLLPHQ 122
Cdd:PRK13540 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIK-------KDLCTYQKQLCFvgHRSGINPYL 89
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1528361663 123 TVLDNAAYALRTRGENRpdaldAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPL 199
Cdd:PRK13540 90 TLRENCLYDIHFSPGAV-----GITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDEL 161
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
45-256 |
3.64e-08 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 53.55 E-value: 3.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDanglRELRRyKVSMVF-QNFGLLPHQT 123
Cdd:COG4586 38 VDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLGYVPFKRR----KEFAR-RIGVVFgQRSQLWWDLP 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 124 VLD----NAA-YALrtrgenrPDALDAAR-NWLTKV-GLDGYgEHYP-DELSGGMRQRVGLARALAADTDVLLMDEAFSA 195
Cdd:COG4586 113 AIDsfrlLKAiYRI-------PDAEYKKRlDELVELlDLGEL-LDTPvRQLSLGQRMRCELAAALLHRPKILFLDEPTIG 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1528361663 196 LDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSR 256
Cdd:COG4586 185 LDVVSKEAIREFLKEYNRERGTTILLTSHDMDDIEALCDRVIVIDHGRIIYDGSLEELKER 245
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
45-249 |
8.96e-08 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 51.95 E-value: 8.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVR----HFNRLIepTAGEIVIDGNDVIRLDAnglrELRRYK-VSMVFQNFGLL 119
Cdd:CHL00131 23 LKGLNLSINKGEIHAIMGPNGSGKSTLSKviagHPAYKI--LEGDILFKGESILDLEP----EERAHLgIFLAFQYPIEI 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 120 PHQTVLD--NAAYALRTRGENRPDA-----LDAARNWLTKVGLD-GYGEHYPDE-LSGGMRQRVGLARALAADTDVLLMD 190
Cdd:CHL00131 97 PGVSNADflRLAYNSKRKFQGLPELdplefLEIINEKLKLVGMDpSFLSRNVNEgFSGGEKKRNEILQMALLDSELAILD 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361663 191 EAFSALDplIrtemqDQL------LELQATLSKTIVFITHD---LDEAlrIGDRIAILRDGTLVQVGT 249
Cdd:CHL00131 177 ETDSGLD--I-----DALkiiaegINKLMTSENSIILITHYqrlLDYI--KPDYVHVMQNGKIIKTGD 235
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
138-256 |
1.30e-07 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 52.04 E-value: 1.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 138 NRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQDQLLELQATlSK 217
Cdd:NF000106 117 SRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRD-GA 195
|
90 100 110
....*....|....*....|....*....|....*....
gi 1528361663 218 TIVFITHDLDEALRIGDRIAILRDGTLVQVGTPDDILSR 256
Cdd:NF000106 196 TVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKTK 234
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
45-197 |
1.34e-07 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 50.64 E-value: 1.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVirldanglRELRRYKVSMVFQNFGLLPHQTV 124
Cdd:PRK13541 16 LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNI--------NNIAKPYCTYIGHNLGLKLEMTV 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1528361663 125 LDNaayaLRTRGE--NRPDALDAArnwLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALD 197
Cdd:PRK13541 88 FEN----LKFWSEiyNSAETLYAA---IHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
45-245 |
1.84e-07 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 50.34 E-value: 1.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTA---GEIVIDGNDVirldangLRELRRYKVSMVFQNFGLL-- 119
Cdd:cd03233 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVsveGDIHYNGIPY-------KEFAEKYPGEIIYVSEEDVhf 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 120 PHQTVLDNAAYALRTRGENrpdaldaarnwltkvgldgygehYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPL 199
Cdd:cd03233 96 PTLTVRETLDFALRCKGNE-----------------------FVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSS 152
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1528361663 200 IRTEMQdQLLELQATLSKTIVFIT--HDLDEALRIGDRIAILRDGTLV 245
Cdd:cd03233 153 TALEIL-KCIRTMADVLKTTTFVSlyQASDEIYDLFDKVLVLYEGRQI 199
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
46-244 |
1.70e-06 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 48.77 E-value: 1.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 46 NDVSLGIASGEIFVIMGLSGSGKSTLVRH-FNRLIEPTAGEIVIDGNDVirlDANGLRELRRYKVSMVFQN---FGLLPH 121
Cdd:PRK13549 279 DDVSFSLRRGEILGIAGLVGAGRTELVQClFGAYPGRWEGEIFIDGKPV---KIRNPQQAIAQGIAMVPEDrkrDGIVPV 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 122 QTVLDN---AAYALRTRGE--NRPDALDAARNWLTKVGLDGYGEHYP-DELSGGMRQRVGLARALAADTDVLLMDEAFSA 195
Cdd:PRK13549 356 MGVGKNitlAALDRFTGGSriDDAAELKTILESIQRLKVKTASPELAiARLSGGNQQKAVLAKCLLLNPKILILDEPTRG 435
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1528361663 196 LDPLIRTEMQDQLLELqATLSKTIVFITHDLDEALRIGDRIAILRDGTL 244
Cdd:PRK13549 436 IDVGAKYEIYKLINQL-VQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
53-226 |
1.81e-06 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 48.13 E-value: 1.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 53 ASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGN--DVIRLDANGlrELRRY---------KVSMVFQNFGLLPH 121
Cdd:cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDwdEILDEFRGS--ELQNYftkllegdvKVIVKPQYVDLIPK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 122 Q---TVLDNAayalrtrgeNRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDP 198
Cdd:cd03236 102 AvkgKVGELL---------KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI 172
|
170 180
....*....|....*....|....*...
gi 1528361663 199 LIRTEMQDQLLELqATLSKTIVFITHDL 226
Cdd:cd03236 173 KQRLNAARLIREL-AEDDNYVLVVEHDL 199
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
45-242 |
4.10e-06 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 47.42 E-value: 4.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDA-----NG---LRELRRykvsmvfqNF 116
Cdd:PRK10982 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNAneainHGfalVTEERR--------ST 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 117 GLLPHQTVLDNAAYALRTRGENRPDALDAAR-----NWLT---KVGLDGYGEHYpDELSGGMRQRVGLARALAADTDVLL 188
Cdd:PRK10982 336 GIYAYLDIGFNSLISNIRNYKNKVGLLDNSRmksdtQWVIdsmRVKTPGHRTQI-GSLSGGNQQKVIIGRWLLTQPEILM 414
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 189 MDEAFSALDPLIRTEMQDQLLELqATLSKTIVFITHDLDEALRIGDRIAILRDG 242
Cdd:PRK10982 415 LDEPTRGIDVGAKFEIYQLIAEL-AKKDKGIIIISSEMPELLGITDRILVMSNG 467
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
44-244 |
5.74e-06 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 47.31 E-value: 5.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 44 GLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDV-IRLDANGLR-------ELRRYK---VSM- 111
Cdd:PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVvTRSPQDGLAngivyisEDRKRDglvLGMs 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 112 VFQNFGLlphqTVLD---NAAYALRTRGEN------------RPDALDAArnwltkVGLdgygehypdeLSGGMRQRVGL 176
Cdd:PRK10762 347 VKENMSL----TALRyfsRAGGSLKHADEQqavsdfirlfniKTPSMEQA------IGL----------LSGGNQQKVAI 406
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1528361663 177 ARALAADTDVLLMDEAFSALDPLIRTEMQDQLLELQAT-LSktIVFITHDLDEALRIGDRIAILRDGTL 244
Cdd:PRK10762 407 ARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEgLS--IILVSSEMPEVLGMSDRILVMHEGRI 473
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
57-226 |
6.54e-06 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 45.77 E-value: 6.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 57 IFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVIRLDANGLR-EL------RRYKV-------------------S 110
Cdd:COG0419 25 LNLIVGPNGAGKSTILEAIRYALYGKARSRSKLRSDLINVGSEEASvELefehggKRYRIerrqgefaefleakpserkE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 111 MVFQNFGLLPHQTVLDNAAyALRTRGENRPDALDAARNWLTKVGLDGYGEHYPDELSGGMRQRVGLARALAadtdvLLMD 190
Cdd:COG0419 105 ALKRLLGLEIYEELKERLK-ELEEALESALEELAELQKLKQEILAQLSGLDPIETLSGGERLRLALADLLS-----LILD 178
|
170 180 190
....*....|....*....|....*....|....*.
gi 1528361663 191 eaFSALDPLIRTEMQDQLLELQatlsktivFITHDL 226
Cdd:COG0419 179 --FGSLDEERLERLLDALEELA--------IITHVI 204
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
32-197 |
7.05e-06 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 47.11 E-value: 7.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 32 KADVLSE-TGCNVGLNDVSLGIASGEIFV-----IMGLSGSGKSTLVRHFNRLIEPTAGEIVIDgndvIRLDanglrelr 105
Cdd:PRK13409 336 ERETLVEyPDLTKKLGDFSLEVEGGEIYEgevigIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE----LKIS-------- 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 106 rYKVSMVFQNFGLlphqTVLDNaayaLRtrgeNRPDALDAarNW-----LTKVGLDGYGEHYPDELSGGMRQRVGLARAL 180
Cdd:PRK13409 404 -YKPQYIKPDYDG----TVEDL----LR----SITDDLGS--SYykseiIKPLQLERLLDKNVKDLSGGELQRVAIAACL 468
|
170
....*....|....*..
gi 1528361663 181 AADTDVLLMDEAFSALD 197
Cdd:PRK13409 469 SRDADLYLLDEPSAHLD 485
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
45-236 |
8.01e-06 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 45.01 E-value: 8.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRhfnrlieptageividgndvirldaNGLRELRRYKVSMVFQNFGllPHQTV 124
Cdd:cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVN-------------------------EGLYASGKARLISFLPKFS--RNKLI 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 ldnaayalrtrgenrpdALDAARNwLTKVGLdGY---GEHYPdELSGGMRQRVGLARALAADTD--VLLMDEAFSALDPL 199
Cdd:cd03238 64 -----------------FIDQLQF-LIDVGL-GYltlGQKLS-TLSGGELQRVKLASELFSEPPgtLFILDEPSTGLHQQ 123
|
170 180 190
....*....|....*....|....*....|....*..
gi 1528361663 200 IRTEMQDQLLELqATLSKTIVFITHDLDeALRIGDRI 236
Cdd:cd03238 124 DINQLLEVIKGL-IDLGNTVILIEHNLD-VLSSADWI 158
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
45-225 |
9.63e-06 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 46.47 E-value: 9.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNdvirldanglrelrrYKVSMVFQNFGLLPHQTV 124
Cdd:TIGR03719 21 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEARPQPG---------------IKVGYLPQEPQLDPTKTV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 125 LDN-------------------AAYA--------LRTRGENRPDALDAARNWltkvGLDGYGEHYPD------------E 165
Cdd:TIGR03719 86 RENveegvaeikdaldrfneisAKYAepdadfdkLAAEQAELQEIIDAADAW----DLDSQLEIAMDalrcppwdadvtK 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 166 LSGGMRQRVGLARALAADTDVLLMDEAFSALDplirTEMQDQLLELQATLSKTIVFITHD 225
Cdd:TIGR03719 162 LSGGERRRVALCRLLLSKPDMLLLDEPTNHLD----AESVAWLERHLQEYPGTVVAVTHD 217
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
166-256 |
1.56e-05 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 45.89 E-value: 1.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 166 LSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTemqdQLLELQATLSK-----TIVFITHDLDEALRIgDRIAILR 240
Cdd:NF033858 137 LSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLSRR----QFWELIDRIRAerpgmSVLVATAYMEEAERF-DWLVAMD 211
|
90
....*....|....*.
gi 1528361663 241 DGTLVQVGTPDDILSR 256
Cdd:NF033858 212 AGRVLATGTPAELLAR 227
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
45-197 |
4.15e-05 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 43.39 E-value: 4.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLV-----RHFNRLIEptaGEIVIDGndvIRLDANGLRElrrykVSMVFQNFGLL 119
Cdd:cd03232 23 LNNISGYVKPGTLTALMGESGAGKTTLLdvlagRKTAGVIT---GEILING---RPLDKNFQRS-----TGYVEQQDVHS 91
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361663 120 PHQTVLDnaayALRTRGENRpdaldaarnwltkvgldgygehypdELSGGMRQRVGLARALAADTDVLLMDEAFSALD 197
Cdd:cd03232 92 PNLTVRE----ALRFSALLR-------------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLD 140
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
152-226 |
5.23e-05 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 44.39 E-value: 5.23e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1528361663 152 KVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQDQLLELqATLSKTIVFITHDL 226
Cdd:COG1245 199 KLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPSSYLDIYQRLNVARLIREL-AEEGKYVLVVEHDL 272
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
164-226 |
5.57e-05 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 44.03 E-value: 5.57e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1528361663 164 DELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQDQLLELqaTLSKTIVFITHDL 226
Cdd:PRK13409 211 SELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIREL--AEGKYVLVVEHDL 271
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
45-197 |
9.54e-05 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 42.86 E-value: 9.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHF--NRLIEPTAGEIVIDGNDVIRLDAnglRELRRYKVSMVFQNFGLLP-- 120
Cdd:PRK09580 17 LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLagREDYEVTGGTVEFKGKDLLELSP---EDRAGEGIFMAFQYPVEIPgv 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 121 -HQTVLDNAAYALRT-RGENRPDALDAARNWLTKVGLdgygEHYPDEL---------SGGMRQRVGLARALAADTDVLLM 189
Cdd:PRK09580 94 sNQFFLQTALNAVRSyRGQEPLDRFDFQDLMEEKIAL----LKMPEDLltrsvnvgfSGGEKKRNDILQMAVLEPELCIL 169
|
....*...
gi 1528361663 190 DEAFSALD 197
Cdd:PRK09580 170 DESDSGLD 177
|
|
| ABC_sbcCD |
cd03279 |
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are ... |
166-238 |
1.06e-04 |
|
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Pssm-ID: 213246 [Multi-domain] Cd Length: 213 Bit Score: 42.26 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 166 LSGGMRQRVGLARALA----------ADTDVLLMDEAFSALDPLIRtEMQDQLLELQATLSKTIVFITHDLDEALRIGDR 235
Cdd:cd03279 124 LSGGETFLASLSLALAlsevlqnrggARLEALFIDEGFGTLDPEAL-EAVATALELIRTENRMVGVISHVEELKERIPQR 202
|
...
gi 1528361663 236 IAI 238
Cdd:cd03279 203 LEV 205
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
55-197 |
1.12e-04 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 43.23 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 55 GEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIvidgNDVIRLDanglrelrrYKVSMVFQNFGLlPHQTVLDNAAyalrt 134
Cdd:COG1245 366 GEVLGIVGPNGIGKTTFAKILAGVLKPDEGEV----DEDLKIS---------YKPQYISPDYDG-TVEEFLRSAN----- 426
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1528361663 135 rgenrPDALDAarNW-----LTKVGLDGYGEHYPDELSGGMRQRVGLARALAADTDVLLMDEAFSALD 197
Cdd:COG1245 427 -----TDDFGS--SYykteiIKPLGLEKLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 487
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
40-236 |
1.61e-04 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 42.85 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 40 GCNVGLNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGN-------------DVIRLD--ANGLREL 104
Cdd:PRK10636 12 GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNwqlawvnqetpalPQPALEyvIDGDREY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 105 RRYKVSMVFQNfgllphqtvLDNAAYALRT-RGEnrpdaLDAARNWLTKVG----LDGYG------EHYPDELSGGMRQR 173
Cdd:PRK10636 92 RQLEAQLHDAN---------ERNDGHAIATiHGK-----LDAIDAWTIRSRaaslLHGLGfsneqlERPVSDFSGGWRMR 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1528361663 174 VGLARALAADTDVLLMDEAFSALDplirtemQDQLLELQATL---SKTIVFITHDLDEALRIGDRI 236
Cdd:PRK10636 158 LNLAQALICRSDLLLLDEPTNHLD-------LDAVIWLEKWLksyQGTLILISHDRDFLDPIVDKI 216
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
45-237 |
2.78e-04 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 41.84 E-value: 2.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIdGNDVirldanglrelrryKVSMVFQNF-GLLPHQT 123
Cdd:TIGR03719 338 IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI-GETV--------------KLAYVDQSRdALDPNKT 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 124 VLdnaayalrtrgENRPDALD---------AARNWLTKVGLDGYGEHYP-DELSGGMRQRVGLARALAADTDVLLMDEAF 193
Cdd:TIGR03719 403 VW-----------EEISGGLDiiklgkreiPSRAYVGRFNFKGSDQQKKvGQLSGGERNRVHLAKTLKSGGNVLLLDEPT 471
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1528361663 194 SALDplIRT--EMQDQLLELQAtlskTIVFITHD---LdealrigDRIA 237
Cdd:TIGR03719 472 NDLD--VETlrALEEALLNFAG----CAVVISHDrwfL-------DRIA 507
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
165-239 |
4.63e-04 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 40.25 E-value: 4.63e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1528361663 165 ELSGGMRQRVGLARALAADTDVLLMDEAFSALDPLIRTEMQDQLLELQATLSKTIVFITHDLDEALRIGDRIAIL 239
Cdd:cd03222 71 DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVF 145
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
62-225 |
1.43e-03 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 39.88 E-value: 1.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 62 GLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDviRLDanglrELRRYKVSmvFQNFgllphqTVLD--------------- 126
Cdd:PRK15064 34 GANGCGKSTFMKILGGDLEPSAGNVSLDPNE--RLG-----KLRQDQFA--FEEF------TVLDtvimghtelwevkqe 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 127 -NAAYALrtrgenrPDALD----AARNWLTKVG-LDGY------GE-----------HYP--DELSGGMRQRVGLARALA 181
Cdd:PRK15064 99 rDRIYAL-------PEMSEedgmKVADLEVKFAeMDGYtaearaGElllgvgipeeqHYGlmSEVAPGWKLRVLLAQALF 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1528361663 182 ADTDVLLMDEAFSALDplIRT--EMQDQLLELQAtlskTIVFITHD 225
Cdd:PRK15064 172 SNPDILLLDEPTNNLD--INTirWLEDVLNERNS----TMIIISHD 211
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
150-257 |
3.13e-03 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 38.84 E-value: 3.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 150 LTKVGLDG-YGEHYPDELSGGMRQRVGLARALAAD-TDVL-LMDEAFSALDP-----LIRTemqdqLLELQaTLSKTIVF 221
Cdd:TIGR00630 472 LIDVGLDYlSLSRAAGTLSGGEAQRIRLATQIGSGlTGVLyVLDEPSIGLHQrdnrrLINT-----LKRLR-DLGNTLIV 545
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1528361663 222 ITHDlDEALRIGDRI------AILRDGTLVQVGTPDDILSRP 257
Cdd:TIGR00630 546 VEHD-EDTIRAADYVidigpgAGEHGGEVVASGTPEEILANP 586
|
|
| PRK00029 |
PRK00029 |
YdiU family protein; |
154-196 |
3.79e-03 |
|
YdiU family protein;
Pssm-ID: 234583 Cd Length: 487 Bit Score: 38.22 E-value: 3.79e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1528361663 154 GLDGYGEHYPDELSGGMRQRVGLARALAADTDvlLMDEAFSAL 196
Cdd:PRK00029 320 ALDRFGDAYQAAYRARMRAKLGLFTEEEEDNA--LLNALLALM 360
|
|
| PRK05541 |
PRK05541 |
adenylylsulfate kinase; Provisional |
52-104 |
4.25e-03 |
|
adenylylsulfate kinase; Provisional
Pssm-ID: 235498 Cd Length: 176 Bit Score: 37.34 E-value: 4.25e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 52 IASGEIFVIMGLSGSGKSTLVRH-FNRLIEptageiviDGNDVIRLDANGLREL 104
Cdd:PRK05541 4 KPNGYVIWITGLAGSGKTTIAKAlYERLKL--------KYSNVIYLDGDELREI 49
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
45-197 |
4.37e-03 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 38.30 E-value: 4.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHF----------NRLIEPTAGEIVIDGNDVIRLDANGLRElrryKVSMVFQ 114
Cdd:PLN03073 193 IVDASVTLAFGRHYGLVGRNGTGKTTFLRYMamhaidgipkNCQILHVEQEVVGDDTTALQCVLNTDIE----RTQLLEE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 115 NFGLLPHQTVLDNAAYALRTRGEN------------------RPDALDA----ARNWLTKVGLDGYGEHYPDE---LSGG 169
Cdd:PLN03073 269 EAQLVAQQRELEFETETGKGKGANkdgvdkdavsqrleeiykRLELIDAytaeARAASILAGLSFTPEMQVKAtktFSGG 348
|
170 180
....*....|....*....|....*...
gi 1528361663 170 MRQRVGLARALAADTDVLLMDEAFSALD 197
Cdd:PLN03073 349 WRMRIALARALFIEPDLLLLDEPTNHLD 376
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
139-224 |
5.02e-03 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 38.19 E-value: 5.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 139 RPDALDAARNWLtkvgldgygehypDELSGGMRQRVGLARALAADTDVLLMDEAFSALDPlirtEMQDQLLELQATLSKT 218
Cdd:TIGR00954 569 REGGWSAVQDWM-------------DVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSV----DVEGYMYRLCREFGIT 631
|
....*.
gi 1528361663 219 IVFITH 224
Cdd:TIGR00954 632 LFSVSH 637
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
45-227 |
6.58e-03 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 37.79 E-value: 6.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 45 LNDVSLGIASGEIFVIMGLSGSGKSTLVRHFNRLIEPTAGEIVIDGNDVI-------RLDAN---------GLRE----L 104
Cdd:PRK11819 23 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVgylpqepQLDPEktvrenveeGVAEvkaaL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 105 RRY-KVSMVFQN-----------FGLLphQTVLDNA-AYALRTRGENrpdALDAAR--NWLTKVGLdgygehypdeLSGG 169
Cdd:PRK11819 103 DRFnEIYAAYAEpdadfdalaaeQGEL--QEIIDAAdAWDLDSQLEI---AMDALRcpPWDAKVTK----------LSGG 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1528361663 170 MRQRVGLARALAADTDVLLMDEAFSALDplirtemQDQLLELQATLSK---TIVFITHD---LD 227
Cdd:PRK11819 168 ERRRVALCRLLLEKPDMLLLDEPTNHLD-------AESVAWLEQFLHDypgTVVAVTHDryfLD 224
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
36-250 |
8.93e-03 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 36.82 E-value: 8.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 36 LSETGCNV-GLNDVSLGIASGEIFVIMGLSGSGKSTLV---------RHFNRLIEPTAGEIVIDGND----VIRLDA--- 98
Cdd:cd03271 1 LTLKGAREnNLKNIDVDIPLGVLTCVTGVSGSGKSSLIndtlypalaRRLHLKKEQPGNHDRIEGLEhidkVIVIDQspi 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 99 ---------------NGLREL-------RRYKvsmvfqnfgllpHQT------------VLDNAAYALRTRGENRPDALD 144
Cdd:cd03271 81 grtprsnpatytgvfDEIRELfcevckgKRYN------------RETlevrykgksiadVLDMTVEEALEFFENIPKIAR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1528361663 145 AARNwLTKVGLdGY---GEHYPdELSGGMRQRVGLARALA----ADTDVLLmDEAFSALdpliRTEMQDQLLE-LQATLS 216
Cdd:cd03271 149 KLQT-LCDVGL-GYiklGQPAT-TLSGGEAQRIKLAKELSkrstGKTLYIL-DEPTTGL----HFHDVKKLLEvLQRLVD 220
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1528361663 217 K--TIVFITHDLDeALRIGDRIAIL------RDGTLVQVGTP 250
Cdd:cd03271 221 KgnTVVVIEHNLD-VIKCADWIIDLgpeggdGGGQVVASGTP 261
|
|
| |
