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Conserved domains on  [gi|1535637474|ref|WP_125350002|]
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MULTISPECIES: Lrp/AsnC ligand binding domain-containing protein [Empedobacter]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK11179 super family cl32655
DNA-binding transcriptional regulator AsnC; Provisional
 10-156 7.14e-48

DNA-binding transcriptional regulator AsnC; Provisional


The actual alignment was detected with superfamily member PRK11179:

Pssm-ID: 183019 [Multi-domain]  Cd Length: 153  Bit Score: 151.79  E-value: 7.14e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1535637474  10 EIDGIDKLILNAFMDNANIPVSQLAKELGISNTAVHQRIKKLEASGVIDSTKVIVNPAILGYSTMSFVGVFMDKPSSYKL 89
Cdd:PRK11179    6 QIDNLDRGILEALMENARTPYAELAKQFGVSPGTIHVRVEKMKQAGIITGTRVDVNPKQLGYDVCCFIGIILKSAKDYPS 85

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1535637474  90 VVKALEEIPEVVEAHFTTGNYGIFLKILSRDNLHLMNVLNKKIQQIDGVTRTETIISLEQPIDRQIK 156
Cdd:PRK11179   86 ALAKLESLDEVVEAYYTTGHYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTETLISLQNPIMRTIK 152
 
Name Accession Description Interval E-value
PRK11179 PRK11179
DNA-binding transcriptional regulator AsnC; Provisional
 10-156 7.14e-48

DNA-binding transcriptional regulator AsnC; Provisional


Pssm-ID: 183019 [Multi-domain]  Cd Length: 153  Bit Score: 151.79  E-value: 7.14e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1535637474  10 EIDGIDKLILNAFMDNANIPVSQLAKELGISNTAVHQRIKKLEASGVIDSTKVIVNPAILGYSTMSFVGVFMDKPSSYKL 89
Cdd:PRK11179    6 QIDNLDRGILEALMENARTPYAELAKQFGVSPGTIHVRVEKMKQAGIITGTRVDVNPKQLGYDVCCFIGIILKSAKDYPS 85

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1535637474  90 VVKALEEIPEVVEAHFTTGNYGIFLKILSRDNLHLMNVLNKKIQQIDGVTRTETIISLEQPIDRQIK 156
Cdd:PRK11179   86 ALAKLESLDEVVEAYYTTGHYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTETLISLQNPIMRTIK 152
Lrp COG1522
DNA-binding transcriptional regulator, Lrp family [Transcription];
9-147 2.54e-44

DNA-binding transcriptional regulator, Lrp family [Transcription];


Pssm-ID: 441131 [Multi-domain]  Cd Length: 138  Bit Score: 142.22  E-value: 2.54e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1535637474   9 VEIDGIDKLILNAFMDNANIPVSQLAKELGISNTAVHQRIKKLEASGVIDSTKVIVNPAILGYSTMSFVGVFMDkPSSYK 88
Cdd:COG1522     1 MELDEIDRRILRLLQEDGRLSFAELAERVGLSESTVLRRVRRLEEAGVIRGYGAVVDPEKLGLGVTAFVEVKVP-PHRLD 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1535637474  89 LVVKALEEIPEVVEAHFTTGNYGIFLKILSRDNLHLMNVLNKKIQQIDGVTRTETIISL 147
Cdd:COG1522    80 EFAEALAAIPEVLECYLVTGDYDLLLKVVARDMEELERFLLERLAALPGVRRTETSFVL 138
HTH_ASNC smart00344
helix_turn_helix ASNC type; AsnC: an autogenously regulated activator of asparagine synthetase ...
 11-116 2.20e-32

helix_turn_helix ASNC type; AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli)


Pssm-ID: 214628 [Multi-domain]  Cd Length: 108  Bit Score: 111.07  E-value: 2.20e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1535637474   11 IDGIDKLILNAFMDNANIPVSQLAKELGISNTAVHQRIKKLEASGVIDSTKVIVNPAILGYSTMSFVGVFMDKPSSYKLV 90
Cdd:smart00344   1 LDEIDRKILEELQKDARISLAELAKKVGLSPSTVHNRVKRLEEEGVIKGYTAVLNPKKLGLSVTAFVGVTLENPDKLEEF 80

                           90       100
                   ....*....|....*....|....*.
gi 1535637474   91 VKALEEIPEVVEAHFTTGNYGIFLKI 116
Cdd:smart00344  81 LEKLEKLPEVEEVYLVTGDYDYLLKV 106
AsnC_trans_reg pfam01037
Lrp/AsnC ligand binding domain; The l-leucine-responsive regulatory protein (Lrp/AsnC) family ...
 77-149 1.00e-18

Lrp/AsnC ligand binding domain; The l-leucine-responsive regulatory protein (Lrp/AsnC) family is a family of similar bacterial transcription regulatory proteins. The family is named after two E. coli proteins involved in regulating amino acid metabolism. This entry corresponds to the usually C-terminal regulatory ligand binding domain. Structurally this domain has a dimeric alpha/beta barrel fold. This domain binds almost exclusively amino acids but also 4-hydroxyphenylpyruvate and kynurenine (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).


Pssm-ID: 426007  Cd Length: 73  Bit Score: 75.25  E-value: 1.00e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1535637474  77 VGVFMDKPSSYKLVVKALEEIPEVVEAHFTTGNYGIFLKILSRDNLHLMNVLNKKIQQIDGVTRTETIISLEQ 149
Cdd:pfam01037   1 VEVKLEPGHALEEFAEALAAIPEVVECYRVTGDYDYLLKVVARDLEALERFLREKLRSLPGVARTETSIVLST 73
HTH_ARSR cd00090
Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric ...
 12-61 3.52e-07

Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.


Pssm-ID: 238042 [Multi-domain]  Cd Length: 78  Bit Score: 45.37  E-value: 3.52e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1535637474  12 DGIDKLILNAFMDNAnIPVSQLAKELGISNTAVHQRIKKLEASGVIDSTK 61
Cdd:cd00090     6 DPTRLRILRLLLEGP-LTVSELAERLGLSQSTVSRHLKKLEEAGLVESRR 54
 
Name Accession Description Interval E-value
PRK11179 PRK11179
DNA-binding transcriptional regulator AsnC; Provisional
 10-156 7.14e-48

DNA-binding transcriptional regulator AsnC; Provisional


Pssm-ID: 183019 [Multi-domain]  Cd Length: 153  Bit Score: 151.79  E-value: 7.14e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1535637474  10 EIDGIDKLILNAFMDNANIPVSQLAKELGISNTAVHQRIKKLEASGVIDSTKVIVNPAILGYSTMSFVGVFMDKPSSYKL 89
Cdd:PRK11179    6 QIDNLDRGILEALMENARTPYAELAKQFGVSPGTIHVRVEKMKQAGIITGTRVDVNPKQLGYDVCCFIGIILKSAKDYPS 85

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1535637474  90 VVKALEEIPEVVEAHFTTGNYGIFLKILSRDNLHLMNVLNKKIQQIDGVTRTETIISLEQPIDRQIK 156
Cdd:PRK11179   86 ALAKLESLDEVVEAYYTTGHYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTETLISLQNPIMRTIK 152
Lrp COG1522
DNA-binding transcriptional regulator, Lrp family [Transcription];
9-147 2.54e-44

DNA-binding transcriptional regulator, Lrp family [Transcription];


Pssm-ID: 441131 [Multi-domain]  Cd Length: 138  Bit Score: 142.22  E-value: 2.54e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1535637474   9 VEIDGIDKLILNAFMDNANIPVSQLAKELGISNTAVHQRIKKLEASGVIDSTKVIVNPAILGYSTMSFVGVFMDkPSSYK 88
Cdd:COG1522     1 MELDEIDRRILRLLQEDGRLSFAELAERVGLSESTVLRRVRRLEEAGVIRGYGAVVDPEKLGLGVTAFVEVKVP-PHRLD 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1535637474  89 LVVKALEEIPEVVEAHFTTGNYGIFLKILSRDNLHLMNVLNKKIQQIDGVTRTETIISL 147
Cdd:COG1522    80 EFAEALAAIPEVLECYLVTGDYDLLLKVVARDMEELERFLLERLAALPGVRRTETSFVL 138
HTH_ASNC smart00344
helix_turn_helix ASNC type; AsnC: an autogenously regulated activator of asparagine synthetase ...
 11-116 2.20e-32

helix_turn_helix ASNC type; AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli)


Pssm-ID: 214628 [Multi-domain]  Cd Length: 108  Bit Score: 111.07  E-value: 2.20e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1535637474   11 IDGIDKLILNAFMDNANIPVSQLAKELGISNTAVHQRIKKLEASGVIDSTKVIVNPAILGYSTMSFVGVFMDKPSSYKLV 90
Cdd:smart00344   1 LDEIDRKILEELQKDARISLAELAKKVGLSPSTVHNRVKRLEEEGVIKGYTAVLNPKKLGLSVTAFVGVTLENPDKLEEF 80

                           90       100
                   ....*....|....*....|....*.
gi 1535637474   91 VKALEEIPEVVEAHFTTGNYGIFLKI 116
Cdd:smart00344  81 LEKLEKLPEVEEVYLVTGDYDYLLKV 106
AsnC_trans_reg pfam01037
Lrp/AsnC ligand binding domain; The l-leucine-responsive regulatory protein (Lrp/AsnC) family ...
 77-149 1.00e-18

Lrp/AsnC ligand binding domain; The l-leucine-responsive regulatory protein (Lrp/AsnC) family is a family of similar bacterial transcription regulatory proteins. The family is named after two E. coli proteins involved in regulating amino acid metabolism. This entry corresponds to the usually C-terminal regulatory ligand binding domain. Structurally this domain has a dimeric alpha/beta barrel fold. This domain binds almost exclusively amino acids but also 4-hydroxyphenylpyruvate and kynurenine (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).


Pssm-ID: 426007  Cd Length: 73  Bit Score: 75.25  E-value: 1.00e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1535637474  77 VGVFMDKPSSYKLVVKALEEIPEVVEAHFTTGNYGIFLKILSRDNLHLMNVLNKKIQQIDGVTRTETIISLEQ 149
Cdd:pfam01037   1 VEVKLEPGHALEEFAEALAAIPEVVECYRVTGDYDYLLKVVARDLEALERFLREKLRSLPGVARTETSIVLST 73
PRK11169 PRK11169
leucine-responsive transcriptional regulator Lrp;
10-149 1.94e-15

leucine-responsive transcriptional regulator Lrp;


Pssm-ID: 183009 [Multi-domain]  Cd Length: 164  Bit Score: 69.02  E-value: 1.94e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1535637474  10 EIDGIDKLILNAFMDNANIPVSQLAKELGISNTAVHQRIKKLEASGVIDSTKVIVNPAILGYSTMSFVGVFM--DKPSSY 87
Cdd:PRK11169   11 DLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLnrGAPDVF 90

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1535637474  88 KLVVKALEEIPEVVEAHFTTGNYGIFLKILSRDNLHLMNVLNKKIQQIDGVTRTETIISLEQ 149
Cdd:PRK11169   91 EQFNAAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEE 152
HTH_AsnC-type pfam13404
AsnC-type helix-turn-helix domain;
12-52 8.91e-12

AsnC-type helix-turn-helix domain;


Pssm-ID: 433180 [Multi-domain]  Cd Length: 41  Bit Score: 56.22  E-value: 8.91e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1535637474  12 DGIDKLILNAFMDNANIPVSQLAKELGISNTAVHQRIKKLE 52
Cdd:pfam13404   1 DEIDRKILRLLQEDARISFAELAERVGLSESTVLRRIRRLE 41
HTH_24 pfam13412
Winged helix-turn-helix DNA-binding;
14-57 4.49e-11

Winged helix-turn-helix DNA-binding;


Pssm-ID: 404317 [Multi-domain]  Cd Length: 45  Bit Score: 54.75  E-value: 4.49e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1535637474  14 IDKLILNAFMDNANIPVSQLAKELGISNTAVHQRIKKLEASGVI 57
Cdd:pfam13412   2 TDRKILNLLQENPRISQRELAERLGLSPSTVNRRLKRLEEEGVI 45
HTH_ARSR cd00090
Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric ...
 12-61 3.52e-07

Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.


Pssm-ID: 238042 [Multi-domain]  Cd Length: 78  Bit Score: 45.37  E-value: 3.52e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1535637474  12 DGIDKLILNAFMDNAnIPVSQLAKELGISNTAVHQRIKKLEASGVIDSTK 61
Cdd:cd00090     6 DPTRLRILRLLLEGP-LTVSELAERLGLSQSTVSRHLKKLEEAGLVESRR 54
COG1777 COG1777
Predicted transcriptional regulator, ArsR family [Transcription];
30-62 5.34e-06

Predicted transcriptional regulator, ArsR family [Transcription];


Pssm-ID: 441383  Cd Length: 113  Bit Score: 43.10  E-value: 5.34e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1535637474  30 VSQLAKELGISNTAVHQRIKKLEASGVIDSTKV 62
Cdd:COG1777    33 VSELARELGVSRQAVYKHLRKLEEAGLVESYRE 65
MarR_2 pfam12802
MarR family; The Mar proteins are involved in the multiple antibiotic resistance, a ...
 11-60 2.63e-05

MarR family; The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.


Pssm-ID: 432797 [Multi-domain]  Cd Length: 60  Bit Score: 39.88  E-value: 2.63e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1535637474  11 IDGIDKLILNAFMDNANIPVSQLAKELGISNTAVHQRIKKLEASGVIDST 60
Cdd:pfam12802   3 LTPAQFRVLLALARNPGLTVAELARRLGISKQTVSRLVKRLEAKGLVERE 52
HTH_20 pfam12840
Helix-turn-helix domain; This domain represents a DNA-binding Helix-turn-helix domain found in ...
 18-62 2.90e-05

Helix-turn-helix domain; This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins.


Pssm-ID: 432824 [Multi-domain]  Cd Length: 61  Bit Score: 39.83  E-value: 2.90e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1535637474  18 ILNAFMDNANIPVSQLAKELGISNTAVHQRIKKLEASGVIDSTKV 62
Cdd:pfam12840  15 ILRALVGDEPLTASELARRLDISRNTLSYHLRKLEEAGLVEVVRE 59
HTH_11 pfam08279
HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.
 27-61 3.36e-05

HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.


Pssm-ID: 429896 [Multi-domain]  Cd Length: 52  Bit Score: 39.34  E-value: 3.36e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1535637474  27 NIPVSQLAKELGISNTAVHQRIKKLEASGV-IDSTK 61
Cdd:pfam08279  13 PISGQELAEKLGVSRRTIRRDIKILEELGVpIEAEP 48
BirA COG1654
Biotin operon repressor [Transcription];
18-61 3.47e-05

Biotin operon repressor [Transcription];


Pssm-ID: 441260 [Multi-domain]  Cd Length: 324  Bit Score: 42.67  E-value: 3.47e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1535637474  18 ILNAFMDNANIPVSQLAKELGISNTAVHQRIKKLEASGV-IDSTK 61
Cdd:COG1654     9 LLRLLADGEFHSGEELAEELGVSRAAVWKHIKALRELGYeIESVP 53
COG2345 COG2345
Predicted transcriptional regulator, ArsR family [Transcription];
30-62 9.30e-05

Predicted transcriptional regulator, ArsR family [Transcription];


Pssm-ID: 441914 [Multi-domain]  Cd Length: 217  Bit Score: 41.06  E-value: 9.30e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1535637474  30 VSQLAKELGISNTAVHQRIKKLEASGVIDSTKV 62
Cdd:COG2345    30 AAELAEALGLTPNAVRRHLDALEEEGLVERETE 62
COG2512 COG2512
Predicted transcriptional regulator, contains CW (cell wall-binding) repeats and an HTH domain ...
 10-62 2.61e-04

Predicted transcriptional regulator, contains CW (cell wall-binding) repeats and an HTH domain [General function prediction only];


Pssm-ID: 442002 [Multi-domain]  Cd Length: 80  Bit Score: 37.59  E-value: 2.61e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1535637474  10 EIDGIDKLILNAFMDNA-NIPVSQLAKELGISNTAVHQRIKKLEASGVIDSTKV 62
Cdd:COG2512    12 ELLEDERRVLELLRENGgRMTQSEIVKETGWSKSKVSRLLSRLEERGLIEKERV 65
COG4189 COG4189
Predicted transcriptional regulator, ArsR family [Transcription];
30-62 6.53e-04

Predicted transcriptional regulator, ArsR family [Transcription];


Pssm-ID: 443343 [Multi-domain]  Cd Length: 97  Bit Score: 36.86  E-value: 6.53e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1535637474  30 VSQLAKELGISNTAVHQRIKKLEASGVIDSTKV 62
Cdd:COG4189    35 VNELAEALGLPKSTVSYHIRKLEEAGLIRTEYK 67
HTH_ARSR smart00418
helix_turn_helix, Arsenical Resistance Operon Repressor;
30-61 7.86e-04

helix_turn_helix, Arsenical Resistance Operon Repressor;


Pssm-ID: 197713 [Multi-domain]  Cd Length: 66  Bit Score: 36.03  E-value: 7.86e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1535637474   30 VSQLAKELGISNTAVHQRIKKLEASGVIDSTK 61
Cdd:smart00418  13 VCELAEILGLSQSTVSHHLKKLREAGLVESRR 44
COG3398 COG3398
Predicted transcriptional regulator, contains two HTH domains [Transcription];
18-61 9.79e-04

Predicted transcriptional regulator, contains two HTH domains [Transcription];


Pssm-ID: 442625 [Multi-domain]  Cd Length: 159  Bit Score: 37.55  E-value: 9.79e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1535637474  18 ILNAFMDNANIPVSQLAKELGISNTAVHQRIKKLEASGVIDSTK 61
Cdd:COG3398   102 ILLYLLENPGATNKELAEELGISRSTVSWHLKRLEEDGLVERER 145
MarR COG1846
DNA-binding transcriptional regulator, MarR family [Transcription];
18-55 4.50e-03

DNA-binding transcriptional regulator, MarR family [Transcription];


Pssm-ID: 441451 [Multi-domain]  Cd Length: 142  Bit Score: 35.33  E-value: 4.50e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1535637474  18 ILNAFMDNANIPVSQLAKELGISNTAVHQRIKKLEASG 55
Cdd:COG1846    43 VLAALAEAGGLTQSELAERLGLTKSTVSRLLDRLEEKG 80
PRK11886 PRK11886
bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA;
32-61 6.47e-03

bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA;


Pssm-ID: 237010 [Multi-domain]  Cd Length: 319  Bit Score: 35.92  E-value: 6.47e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1535637474  32 QLAKELGISNTAVHQRIKKLEASGV-IDSTK 61
Cdd:PRK11886   23 QLGEELGISRAAIWKHIQTLEEWGLdIFSVK 53
ArsR COG0640
DNA-binding transcriptional regulator, ArsR family [Transcription];
18-61 6.58e-03

DNA-binding transcriptional regulator, ArsR family [Transcription];


Pssm-ID: 440405 [Multi-domain]  Cd Length: 92  Bit Score: 34.09  E-value: 6.58e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1535637474  18 ILNAFMDNAnIPVSQLAKELGISNTAVHQRIKKLEASGVIDSTK 61
Cdd:COG0640    25 ILRLLAEGE-LCVGELAEALGLSQSTVSHHLKVLREAGLVTSRR 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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