|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
142-446 |
6.44e-151 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 436.51 E-value: 6.44e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 142 HALIGESAALHAVRTVLHKFAPVELPVLVTGETGTGKELAAHALHALSGRAGRPFIAVNCGAIPANLVQSELFGHERGSF 221
Cdd:COG3829 138 DDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAF 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 222 TGADKR-QIGVFESAHGGTVFLDEVGDLPSEAQTSLLRVLQEGTFERVGSSQPLRADVRVLAATHVELEHAVAQGRFRSD 300
Cdd:COG3829 218 TGAKKGgKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFRED 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 301 LYYRLNVLRLLMPPLRERGADVQLLAEHFLRCFRQRHSVRARGFAPAALQAMRRFEWPGNVRELLNRVQRAAIMAEGELI 380
Cdd:COG3829 298 LYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLSEGDVI 377
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1539067939 381 SERDL-----ELGASVAVLPGAMLHDARGQAERDVLLQTLRQTGYNVSECARQMQISRVTVYRLCRKHRLE 446
Cdd:COG3829 378 TPEHLpeyllEEAEAASAAEEGSLKEALEEVEKELIEEALEKTGGNKSKAAKALGISRSTLYRKLKKYGIK 448
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
122-447 |
9.89e-104 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 317.88 E-value: 9.89e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 122 RQQFDADDPPVDATCSRQGPHALIGESAALHAVRTVLHKFAPVELPVLVTGETGTGKELAAHALHALSGRAGRPFIAVNC 201
Cdd:PRK05022 167 SQAELPQDVAEFLRQEALKEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNC 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 202 GAIPANLVQSELFGHERGSFTGADKRQIGVFESAHGGTVFLDEVGDLPSEAQTSLLRVLQEGTFERVGSSQPLRADVRVL 281
Cdd:PRK05022 247 AALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 282 AATHVELEHAVAQGRFRSDLYYRLNVLRLLMPPLRERGADVQLLAEHFLRCFRQRHSVRARGFAPAALQAMRRFEWPGNV 361
Cdd:PRK05022 327 AATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNV 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 362 RELLNRVQRAAIMAEGE------LISERDLELGASVAV-----------LPGAMLHDARGQAERDVLLQTLRQTGYNVSE 424
Cdd:PRK05022 407 RELEHVISRAALLARARgagrivTLEAQHLDLPAEVALpppeaaaapaaVVSQNLREATEAFQRQLIRQALAQHQGNWAA 486
|
330 340
....*....|....*....|...
gi 1539067939 425 CARQMQISRVTVYRLCRkhRLEL 447
Cdd:PRK05022 487 AARALELDRANLHRLAK--RLGL 507
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
144-310 |
1.62e-100 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 297.39 E-value: 1.62e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 144 LIGESAALHAVRTVLHKFAPVELPVLVTGETGTGKELAAHALHALSGRAGRPFIAVNCGAIPANLVQSELFGHERGSFTG 223
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 224 ADKRQIGVFESAHGGTVFLDEVGDLPSEAQTSLLRVLQEGTFERVGSSQPLRADVRVLAATHVELEHAVAQGRFRSDLYY 303
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*..
gi 1539067939 304 RLNVLRL 310
Cdd:pfam00158 161 RLNVIPI 167
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
144-445 |
3.69e-99 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 303.98 E-value: 3.69e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 144 LIGESAALHAVRTVLHKFAPVELPVLVTGETGTGKELAAHALHALSGRAGRPFIAVNCGAIPANLVQSELFGHERGSFTG 223
Cdd:TIGR02915 141 LITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTG 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 224 ADKRQIGVFESAHGGTVFLDEVGDLPSEAQTSLLRVLQEGTFERVGSSQPLRADVRVLAATHVELEHAVAQGRFRSDLYY 303
Cdd:TIGR02915 221 AVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 304 RLNVLRLLMPPLRERGADVQLLAEHFLRCFRQRHSVRARGFAPAALQAMRRFEWPGNVRELLNRVQRAAIMAEGELISER 383
Cdd:TIGR02915 301 RIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAEGNQITAE 380
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1539067939 384 DLEL--GASVAVLPGAMLHDARGQAERDVLLQTLRQTGYNVSECARQMQISRVTVYRLCRKHRL 445
Cdd:TIGR02915 381 DLGLdaRERAETPLEVNLREVRERAEREAVRKAIARVDGNIARAAELLGITRPTLYDLMKKHGI 444
|
|
| RNA_repair_RtcR |
NF038308 |
RNA repair transcriptional activator RtcR; |
167-445 |
1.30e-86 |
|
RNA repair transcriptional activator RtcR;
Pssm-ID: 468466 [Multi-domain] Cd Length: 527 Bit Score: 274.06 E-value: 1.30e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 167 PVLVTGETGTGKELAAHALHALSGRAGR---PFIAVNCGAIPANLVQSELFGHERGSFTGADKRQIGVFESAHGGTVFLD 243
Cdd:NF038308 205 PILLTGPTGAGKSFLARRIYELKKRRHQvsgPFVEVNCATLRGDLAMSELFGHVKGAFTGAQADRAGLLRAADGGTLFLD 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 244 EVGDLPSEAQTSLLRVLQEGTFERVGSSQPLRADVRVLAATHVELEHAVAQGRFRSDLYYRLNVLRLLMPPLRERGADVQ 323
Cdd:NF038308 285 EIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLYARINLWTFRLPGLRERREDIE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 324 LLAEHFLRCFRQRHSVRARG-----FAPAALQAMRRFEWPGNVRELLNRVQRAAIMAEGELISERDLEL----------- 387
Cdd:NF038308 365 PNLDYELDRFARELGRQVRFnkearFRYLAFATSPEALWPGNFRELSASVTRMATLADGGRITEELVEEeiarlraawqs 444
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1539067939 388 -------GASVAVLPGAMLH--DARGQAERDVLLQTLRQTGyNVSECARQM-QISRVTVYRLCRKHRL 445
Cdd:NF038308 445 apaaaddDALADLLGGEQLAelDLFDRVQLAAVLRVCRQSR-SLSAAGRRLfGVSRQQKASPNDADRL 511
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
145-314 |
3.98e-24 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 97.60 E-value: 3.98e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 145 IGESAALHAVRTVLhkFAPVELPVLVTGETGTGKELAAHALHALSGRAGRPFIAVNCGAIPANLVQSELFGHErgsftgA 224
Cdd:cd00009 1 VGQEEAIEALREAL--ELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------L 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 225 DKRQIGVFESAHGGTVFLDEVGDLPSEAQTSLLRVLQEGTFERVGssqplRADVRVLAATHVELEhavaqGRFRSDLYYR 304
Cdd:cd00009 73 VRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRID-----RENVRVIGATNRPLL-----GDLDRALYDR 142
|
170
....*....|
gi 1539067939 305 LNvLRLLMPP 314
Cdd:cd00009 143 LD-IRIVIPL 151
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
167-305 |
3.76e-12 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 63.93 E-value: 3.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 167 PVLVTGETGTGKELAAHALHALSGRAGRPFIAVNCGAIPANLVQ--SELFGHERGSFTGADKRQIGVFESAHG---GTVF 241
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDqlLLIIVGGKKASGSGELRLRLALALARKlkpDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1539067939 242 LDEVGDLPSEAQTSLLRVLQEgtfERVGSSQPLRADVRVLAATHVE--LEHAVAQGRFRSDLYYRL 305
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNDEkdLGPALLRRRFDRRIVLLL 146
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
142-446 |
6.44e-151 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 436.51 E-value: 6.44e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 142 HALIGESAALHAVRTVLHKFAPVELPVLVTGETGTGKELAAHALHALSGRAGRPFIAVNCGAIPANLVQSELFGHERGSF 221
Cdd:COG3829 138 DDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAF 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 222 TGADKR-QIGVFESAHGGTVFLDEVGDLPSEAQTSLLRVLQEGTFERVGSSQPLRADVRVLAATHVELEHAVAQGRFRSD 300
Cdd:COG3829 218 TGAKKGgKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFRED 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 301 LYYRLNVLRLLMPPLRERGADVQLLAEHFLRCFRQRHSVRARGFAPAALQAMRRFEWPGNVRELLNRVQRAAIMAEGELI 380
Cdd:COG3829 298 LYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLSEGDVI 377
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1539067939 381 SERDL-----ELGASVAVLPGAMLHDARGQAERDVLLQTLRQTGYNVSECARQMQISRVTVYRLCRKHRLE 446
Cdd:COG3829 378 TPEHLpeyllEEAEAASAAEEGSLKEALEEVEKELIEEALEKTGGNKSKAAKALGISRSTLYRKLKKYGIK 448
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
138-443 |
2.99e-131 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 385.09 E-value: 2.99e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 138 RQGPHALIGESAALHAVRTVLHKFAPVELPVLVTGETGTGKELAAHALHALSGRAGRPFIAVNCGAIPANLVQSELFGHE 217
Cdd:COG2204 127 NAEDSGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVAVNCAAIPEELLESELFGHE 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 218 RGSFTGADKRQIGVFESAHGGTVFLDEVGDLPSEAQTSLLRVLQEGTFERVGSSQPLRADVRVLAATHVELEHAVAQGRF 297
Cdd:COG2204 207 KGAFTGAVARRIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDVRVIAATNRDLEELVEEGRF 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 298 RSDLYYRLNVLRLLMPPLRERGADVQLLAEHFLRCFRQRHSVRARgFAPAALQAMRRFEWPGNVRELLNRVQRAAIMAEG 377
Cdd:COG2204 287 REDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAAELGKPVK-LSPEALEALLAYDWPGNVRELENVIERAVILADG 365
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1539067939 378 ELISERDLElgasvavlpgamlhDARGQAERDVLLQTLRQTGYNVSECARQMQISRVTVYRLCRKH 443
Cdd:COG2204 366 EVITAEDLP--------------EALEEVERELIERALEETGGNVSRAAELLGISRRTLYRKLKKY 417
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
143-444 |
3.56e-108 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 333.02 E-value: 3.56e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 143 ALIGESAALHAVRTVLHKFAPVELPVLVTGETGTGKELAAHALHALSGRAGRPFIAVNCGAIPANLVQSELFGHERGSFT 222
Cdd:COG3284 322 ALAGGDPAMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAASPRADGPFVAVNCAAIPEELIESELFGYEPGAFT 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 223 GADKR-QIGVFESAHGGTVFLDEVGDLPSEAQTSLLRVLQEGTFERVGSSQPLRADVRVLAATHVELEHAVAQGRFRSDL 301
Cdd:COG3284 402 GARRKgRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAGRFREDL 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 302 YYRLNVLRLLMPPLRERgADVQLLAEHFLRCFRQRHsvRARGFAPAALQAMRRFEWPGNVRELLNRVQRAAIMAEGELIS 381
Cdd:COG3284 482 YYRLNGLTLTLPPLRER-EDLPALIEHLLRELAAGR--GPLRLSPEALALLAAYPWPGNVRELRNVLRTALALADGGVIT 558
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1539067939 382 ERDL--ELGASVAVLPGAMLHDARG--QAERDVLLQTLRQTGYNVSECARQMQISRVTVYRLCRKHR 444
Cdd:COG3284 559 VEDLpdELRAELAAAAPAAAAPLTSleEAERDAILRALRACGGNVSAAARALGISRSTLYRKLKRYG 625
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
122-447 |
9.89e-104 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 317.88 E-value: 9.89e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 122 RQQFDADDPPVDATCSRQGPHALIGESAALHAVRTVLHKFAPVELPVLVTGETGTGKELAAHALHALSGRAGRPFIAVNC 201
Cdd:PRK05022 167 SQAELPQDVAEFLRQEALKEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNC 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 202 GAIPANLVQSELFGHERGSFTGADKRQIGVFESAHGGTVFLDEVGDLPSEAQTSLLRVLQEGTFERVGSSQPLRADVRVL 281
Cdd:PRK05022 247 AALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 282 AATHVELEHAVAQGRFRSDLYYRLNVLRLLMPPLRERGADVQLLAEHFLRCFRQRHSVRARGFAPAALQAMRRFEWPGNV 361
Cdd:PRK05022 327 AATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNV 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 362 RELLNRVQRAAIMAEGE------LISERDLELGASVAV-----------LPGAMLHDARGQAERDVLLQTLRQTGYNVSE 424
Cdd:PRK05022 407 RELEHVISRAALLARARgagrivTLEAQHLDLPAEVALpppeaaaapaaVVSQNLREATEAFQRQLIRQALAQHQGNWAA 486
|
330 340
....*....|....*....|...
gi 1539067939 425 CARQMQISRVTVYRLCRkhRLEL 447
Cdd:PRK05022 487 AARALELDRANLHRLAK--RLGL 507
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
144-310 |
1.62e-100 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 297.39 E-value: 1.62e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 144 LIGESAALHAVRTVLHKFAPVELPVLVTGETGTGKELAAHALHALSGRAGRPFIAVNCGAIPANLVQSELFGHERGSFTG 223
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 224 ADKRQIGVFESAHGGTVFLDEVGDLPSEAQTSLLRVLQEGTFERVGSSQPLRADVRVLAATHVELEHAVAQGRFRSDLYY 303
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*..
gi 1539067939 304 RLNVLRL 310
Cdd:pfam00158 161 RLNVIPI 167
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
120-436 |
7.96e-100 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 305.80 E-value: 7.96e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 120 AMRQQFDADDPPVDAtcSRQGphaLIGESAALHAVRTVLHKFAPVELPVLVTGETGTGKELAAHALHALSGRAGRPFIAV 199
Cdd:PRK10365 122 AHTHSIDAETPAVTA--SQFG---MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTL 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 200 NCGAIPANLVQSELFGHERGSFTGADKRQIGVFESAHGGTVFLDEVGDLPSEAQTSLLRVLQEGTFERVGSSQPLRADVR 279
Cdd:PRK10365 197 NCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVR 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 280 VLAATHVELEHAVAQGRFRSDLYYRLNVLRLLMPPLRERGADVQLLAEHFLRCFRQRHSVRARGFAPAALQAMRRFEWPG 359
Cdd:PRK10365 277 LIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1539067939 360 NVRELLNRVQRAAIMAEGELISERDLELGASVAVLPGAMLHDARG--QAERDVLLQTLRQTGYNVSECARQMQISRVTV 436
Cdd:PRK10365 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPlvEVEKEVILAALEKTGGNKTEAARQLGITRKTL 435
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
144-445 |
3.69e-99 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 303.98 E-value: 3.69e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 144 LIGESAALHAVRTVLHKFAPVELPVLVTGETGTGKELAAHALHALSGRAGRPFIAVNCGAIPANLVQSELFGHERGSFTG 223
Cdd:TIGR02915 141 LITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTG 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 224 ADKRQIGVFESAHGGTVFLDEVGDLPSEAQTSLLRVLQEGTFERVGSSQPLRADVRVLAATHVELEHAVAQGRFRSDLYY 303
Cdd:TIGR02915 221 AVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 304 RLNVLRLLMPPLRERGADVQLLAEHFLRCFRQRHSVRARGFAPAALQAMRRFEWPGNVRELLNRVQRAAIMAEGELISER 383
Cdd:TIGR02915 301 RIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAEGNQITAE 380
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1539067939 384 DLEL--GASVAVLPGAMLHDARGQAERDVLLQTLRQTGYNVSECARQMQISRVTVYRLCRKHRL 445
Cdd:TIGR02915 381 DLGLdaRERAETPLEVNLREVRERAEREAVRKAIARVDGNIARAAELLGITRPTLYDLMKKHGI 444
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
111-416 |
1.01e-98 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 303.58 E-value: 1.01e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 111 PFGLQDLVCAMRQQFDADDPPVDAT---CSRQGPHALIGESAALHAVRTVLHKFAPVELPVLVTGETGTGKELAAHALHA 187
Cdd:TIGR01818 100 PFDLDEAVTLVERALAHAQEQVALPadaGEAEDSAELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHR 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 188 LSGRAGRPFIAVNCGAIPANLVQSELFGHERGSFTGADKRQIGVFESAHGGTVFLDEVGDLPSEAQTSLLRVLQEGTFER 267
Cdd:TIGR01818 180 HSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYR 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 268 VGSSQPLRADVRVLAATHVELEHAVAQGRFRSDLYYRLNVLRLLMPPLRERGADVQLLAEHFLRCFRQRHSVRARGFAPA 347
Cdd:TIGR01818 260 VGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPE 339
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1539067939 348 ALQAMRRFEWPGNVRELLNRVQRAAIMAEGELISERDLE----LGASVAVLPGAMLHDARGQAERDVLLQTLR 416
Cdd:TIGR01818 340 ALERLKQLRWPGNVRQLENLCRWLTVMASGDEVLVSDLPaelaLTGRPASAPDSDGQDSWDEALEAWAKQALS 412
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
115-448 |
4.71e-98 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 303.95 E-value: 4.71e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 115 QDLVCAMRQQFDADDPPVDATCSRQG-PHALIGESAALHAVRTVLHKFAPVELPVLVTGETGTGKELAAHALHALSGRAG 193
Cdd:TIGR01817 168 RLIAEAVQLSKQLRDKAPEIARRRSGkEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAK 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 194 RPFIAVNCGAIPANLVQSELFGHERGSFTGADKRQIGVFESAHGGTVFLDEVGDLPSEAQTSLLRVLQEGTFERVGSSQP 273
Cdd:TIGR01817 248 RPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRT 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 274 LRADVRVLAATHVELEHAVAQGRFRSDLYYRLNVLRLLMPPLRERGADVQLLAEHFLRCFRqRHSVRARGFAPAALQAMR 353
Cdd:TIGR01817 328 LKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFN-RENGRPLTITPSAIRVLM 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 354 RFEWPGNVRELLNRVQRAAIMAEGELISERDLEL-------------------------------GASVAVLPGAMLHDA 402
Cdd:TIGR01817 407 SCKWPGNVRELENCLERTATLSRSGTITRSDFSCqsgqclspmlaktcphghisidplagttpphSPASAALPGEPGLSG 486
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1539067939 403 RGQAERDVLLQTLRQTGYNVSECARQMQIS-RVTVYRLcRKHRLELP 448
Cdd:TIGR01817 487 PTLSERERLIAALEQAGWVQAKAARLLGMTpRQVGYAL-RKLNIEMK 532
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
142-411 |
3.21e-96 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 298.64 E-value: 3.21e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 142 HALIGESAALHAVRTVLHKFAPVELPVLVTGETGTGKELAAHALHALSGRAGRPFIAVNCGAIPANLVQSELFGHERGSF 221
Cdd:COG3283 204 DHIVASSPKMRQVIRQAKKMAMLDAPLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYAPGAF 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 222 TGADKRQIGVFESAHGGTVFLDEVGDLPSEAQTSLLRVLQEGTFERVGSSQPLRADVRVLAATHVELEHAVAQGRFRSDL 301
Cdd:COG3283 284 GNAREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFREDL 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 302 YYRLNVLRLLMPPLRERGADVQLLAEHFLRCFRQRHSVRARGFAPAALQAMRRFEWPGNVRELLNRVQRAAIMAEGELIS 381
Cdd:COG3283 364 YYRLNVLTLTLPPLRERKSDILPLAEHFVARFSQQLGRPRPRLSPDLVDFLQSYPWPGNVRQLENALYRAVSLLEGDELT 443
|
250 260 270
....*....|....*....|....*....|....*.
gi 1539067939 382 ERDLEL---GASVAVLPGAM---LHDARGQAERDVL 411
Cdd:COG3283 444 PEDLQLpeyAASAGLLDDLLegsLDEIVKRFERSLL 479
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
134-433 |
4.92e-93 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 288.67 E-value: 4.92e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 134 ATCSRQGPHALIGESAALHAVRTVLHKFAPVELPVLVTGETGTGKELAAHALHALSGRAGRPFIAVNCGAIPANLVQSEL 213
Cdd:PRK11361 135 ALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESEL 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 214 FGHERGSFTGADKRQIGVFESAHGGTVFLDEVGDLPSEAQTSLLRVLQEGTFERVGSSQPLRADVRVLAATHVELEHAVA 293
Cdd:PRK11361 215 FGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVK 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 294 QGRFRSDLYYRLNVLRLLMPPLRERGADVQLLAEHFLRCFRQRHSVRARGFAPAALQAMRRFEWPGNVRELLNRVQRAAI 373
Cdd:PRK11361 295 EGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVV 374
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 374 MAEGELISERDLELGASVAVLPGAM----------LHDARGQAERDVLLQTLRQTGYNVSECARQMQISR 433
Cdd:PRK11361 375 MNSGPIIFSEDLPPQIRQPVCNAGEvktapvgernLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISR 444
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
121-438 |
3.77e-87 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 275.83 E-value: 3.77e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 121 MRQQFDADDPPVDATCSRQGPHALIGESAALHAVRTVLHKFAPVELPVLVTGETGTGKELAAHALHA--------LSGRA 192
Cdd:PRK15424 198 MTLRHNTHYATRNALRTRYVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHReyfarhdaRQGKK 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 193 GRPFIAVNCGAIPANLVQSELFGHERGSFTGADKR-QIGVFESAHGGTVFLDEVGDLPSEAQTSLLRVLQEGTFERVGSS 271
Cdd:PRK15424 278 SHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGgRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGH 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 272 QPLRADVRVLAATHVELEHAVAQGRFRSDLYYRLNVLRLLMPPLRERGADVQLLAEHFLrcfRQRHSVRARGFAPAALQ- 350
Cdd:PRK15424 358 QPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFL---KQSLAALSAPFSAALRQg 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 351 ------AMRRFEWPGNVRELLNRVQRAAI--------MAEGELISERDLELGASVAVLPGAMLHDARGQaerdvllQTLR 416
Cdd:PRK15424 435 lqqcetLLLHYDWPGNVRELRNLMERLALflsveptpDLTPQFLQLLLPELARESAKTPAPRLLAATLQ-------QALE 507
|
330 340
....*....|....*....|..
gi 1539067939 417 QTGYNVSECARQMQISRVTVYR 438
Cdd:PRK15424 508 RFNGDKTAAANYLGISRTTLWR 529
|
|
| RNA_repair_RtcR |
NF038308 |
RNA repair transcriptional activator RtcR; |
167-445 |
1.30e-86 |
|
RNA repair transcriptional activator RtcR;
Pssm-ID: 468466 [Multi-domain] Cd Length: 527 Bit Score: 274.06 E-value: 1.30e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 167 PVLVTGETGTGKELAAHALHALSGRAGR---PFIAVNCGAIPANLVQSELFGHERGSFTGADKRQIGVFESAHGGTVFLD 243
Cdd:NF038308 205 PILLTGPTGAGKSFLARRIYELKKRRHQvsgPFVEVNCATLRGDLAMSELFGHVKGAFTGAQADRAGLLRAADGGTLFLD 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 244 EVGDLPSEAQTSLLRVLQEGTFERVGSSQPLRADVRVLAATHVELEHAVAQGRFRSDLYYRLNVLRLLMPPLRERGADVQ 323
Cdd:NF038308 285 EIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLYARINLWTFRLPGLRERREDIE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 324 LLAEHFLRCFRQRHSVRARG-----FAPAALQAMRRFEWPGNVRELLNRVQRAAIMAEGELISERDLEL----------- 387
Cdd:NF038308 365 PNLDYELDRFARELGRQVRFnkearFRYLAFATSPEALWPGNFRELSASVTRMATLADGGRITEELVEEeiarlraawqs 444
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1539067939 388 -------GASVAVLPGAMLH--DARGQAERDVLLQTLRQTGyNVSECARQM-QISRVTVYRLCRKHRL 445
Cdd:NF038308 445 apaaaddDALADLLGGEQLAelDLFDRVQLAAVLRVCRQSR-SLSAAGRRLfGVSRQQKASPNDADRL 511
|
|
| phageshock_pspF |
TIGR02974 |
psp operon transcriptional activator PspF; Members of this protein family are PspF, the ... |
144-443 |
1.34e-84 |
|
psp operon transcriptional activator PspF; Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions]
Pssm-ID: 274371 [Multi-domain] Cd Length: 329 Bit Score: 262.62 E-value: 1.34e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 144 LIGESAALHAVRTVLHKFAPVELPVLVTGETGTGKELAAHALHALSGRAGRPFIAVNCGAIPANLVQSELFGHERGSFTG 223
Cdd:TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 224 ADKRQIGVFESAHGGTVFLDEVGDLPSEAQTSLLRVLQEGTFERVGSSQPLRADVRVLAATHVELEHAVAQGRFRSDLYY 303
Cdd:TIGR02974 81 AQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 304 RLNVLRLLMPPLRERGADVQLLAEHF-LRCFRQRHSVRARGFAPAALQAMRRFEWPGNVRELLNRVQRA----------- 371
Cdd:TIGR02974 161 RLAFDVITLPPLRERQEDIMLLAEHFaIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSvyrhgleeapi 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 372 ----------------AIMAEGELISER-DLELGASVAVLPGAMLHDARGQAERDVLLQTLRQTGYNVSECARQMQISRV 434
Cdd:TIGR02974 241 deiiidpfaspwrpkqAAPAVDEVNSTPtDLPSPSSIAAAFPLDLKQAQQDYEIELLQQALAEAQFNQRKAAELLGLTYH 320
|
....*....
gi 1539067939 435 TVYRLCRKH 443
Cdd:TIGR02974 321 QLRGLLRKH 329
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
111-438 |
7.37e-84 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 265.58 E-value: 7.37e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 111 PFGLQDLVCAM-------RQQFDADDPPVDATCSRqgphaLIGESAALHAVRTVLHKFAPVELPVLVTGETGTGKELAAH 183
Cdd:PRK10923 105 PFDIDEAVALVeraishyQEQQQPRNIQVNGPTTD-----IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 184 ALHALSGRAGRPFIAVNCGAIPANLVQSELFGHERGSFTGADKRQIGVFESAHGGTVFLDEVGDLPSEAQTSLLRVLQEG 263
Cdd:PRK10923 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADG 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 264 TFERVGSSQPLRADVRVLAATHVELEHAVAQGRFRSDLYYRLNVLRLLMPPLRERGADVQLLAEHFLRCFRQRHSVRARG 343
Cdd:PRK10923 260 QFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKL 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 344 FAPAALQAMRRFEWPGNVRELLNRVQRAAIMAEGELISERDL--EL------GASVAVLPGA------------------ 397
Cdd:PRK10923 340 LHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLpgELfestvpESTSQMQPDSwatllaqwadralrsghq 419
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1539067939 398 -MLHDARGQAERDVLLQTLRQTGYNVSECARQMQISRVTVYR 438
Cdd:PRK10923 420 nLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTR 461
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
121-438 |
5.45e-83 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 264.80 E-value: 5.45e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 121 MRQQFDADDPPVDATCSRQGPHALIGESAALHAVRTVLHKFAPVELPVLVTGETGTGKELAAHALHALSGRAGRPFIAVN 200
Cdd:TIGR02329 191 LRQAATLRSATRNQLRTRYRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAIN 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 201 CGAIPANLVQSELFGHERGSFTGADKR-QIGVFESAHGGTVFLDEVGDLPSEAQTSLLRVLQEGTFERVGSSQPLRADVR 279
Cdd:TIGR02329 271 CGAIAESLLEAELFGYEEGAFTGARRGgRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVR 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 280 VLAATHVELEHAVAQGRFRSDLYYRLNVLRLLMPPLRERGADVQLLAEHFLrcfRQRHSVRARGFAPAALQ-------AM 352
Cdd:TIGR02329 351 VVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYL---VQAAAALRLPDSEAAAQvlagvadPL 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 353 RRFEWPGNVRELLNRVQRAAI----MAEGELISERDLELGASVA--VLPGAMLHDARGQAERDVLL---QTLRQTGYNVS 423
Cdd:TIGR02329 428 QRYPWPGNVRELRNLVERLALelsaMPAGALTPDVLRALAPELAeaSGKGKTSALSLRERSRVEALavrAALERFGGDRD 507
|
330
....*....|....*
gi 1539067939 424 ECARQMQISRVTVYR 438
Cdd:TIGR02329 508 AAAKALGISRTTLWR 522
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
159-446 |
1.88e-81 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 258.23 E-value: 1.88e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 159 HKFAPVELPVLVTGETGTGKELAAHALHALSGRAGRPFIAVNCGAIPANLVQSELFGHERGSFTGADKRQIGVFESAHGG 238
Cdd:PRK15115 151 RMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 239 TVFLDEVGDLPSEAQTSLLRVLQEGTFERVGSSQPLRADVRVLAATHVELEHAVAQGRFRSDLYYRLNVLRLLMPPLRER 318
Cdd:PRK15115 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAER 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 319 GADVQLLAEHFLRCFRQRHSVRARGFAPAALQAMRRFEWPGNVRELLNRVQRAAIMAEGELISERDLE--LGASVAVLPg 396
Cdd:PRK15115 311 TEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEqaLEGENTALP- 389
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1539067939 397 aMLHDARGQAERDVLLQTLRQTGYNVSECARQMQISRVTVYRLCRKHRLE 446
Cdd:PRK15115 390 -TFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
144-445 |
1.50e-76 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 252.06 E-value: 1.50e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 144 LIGESAALHAVRTVLHKFAPVELPVLVTGETGTGKELAAHALHALSGRAGRPFIAVNCGAIPANLVQSELFGHERGSFTG 223
Cdd:PRK15429 378 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTG 457
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 224 ADKRQIGVFESAHGGTVFLDEVGDLPSEAQTSLLRVLQEGTFERVGSSQPLRADVRVLAATHVELEHAVAQGRFRSDLYY 303
Cdd:PRK15429 458 ASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 537
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 304 RLNVLRLLMPPLRERGADVQLLAEHFLRCFRQRHSVRARGFAPAALQAMRRFEWPGNVRELLNRVQRAAIMAEGELISER 383
Cdd:PRK15429 538 RLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS 617
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1539067939 384 DLELGASVAVLPGAMLHDAR-GQAERDVLLQTLRQTGYNVS---ECARQMQISRVTVyrLCRKHRL 445
Cdd:PRK15429 618 LPDITLPEPETPPAATVVAQeGEDEYQLIVRVLKETNGVVAgpkGAAQRLGLKRTTL--LSRMKRL 681
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
170-446 |
1.35e-75 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 239.75 E-value: 1.35e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 170 VTGETGTGKELAAHALHALSGRAGRPFIAVNCGAIPANLVQSelfghergsftgadkrqigvfesahggtvfldevgdlp 249
Cdd:COG3604 120 ILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES-------------------------------------- 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 250 seaqtsllrvLQEGTFERVGSSQPLRADVRVLAATHVELEHAVAQGRFRSDLYYRLNVLRLLMPPLRERGADVQLLAEHF 329
Cdd:COG3604 162 ----------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIRLPPLRERREDIPLLAEHF 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 330 LRCFRQRHSVRARGFAPAALQAMRRFEWPGNVRELLNRVQRAAIMAEGELISERDLELGASVAVlpgamlhdarGQAERD 409
Cdd:COG3604 232 LEKFSRRLGKPILRLSPEALEALMAYPWPGNVRELENVIERAVILAEGGVLDADDLAPGSREAL----------EEVERE 301
|
250 260 270
....*....|....*....|....*....|....*..
gi 1539067939 410 VLLQTLRQTGYNVSECARQMQISRVTVYRLCRKHRLE 446
Cdd:COG3604 302 HILEALERTGGNIAGAARLLGLTPSTLRSRMKKLGIK 338
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
144-445 |
3.68e-75 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 238.42 E-value: 3.68e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 144 LIGESAALHAVRTVLHKFAPVELPVLVTGETGTGKELAAHALHALSGRAGRPFIAVNCGAIPANLVQSELFGHERGSFTG 223
Cdd:PRK11608 8 LLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 224 ADKRQIGVFESAHGGTVFLDEVGDLPSEAQTSLLRVLQEGTFERVGSSQPLRADVRVLAATHVELEHAVAQGRFRSDLYY 303
Cdd:PRK11608 88 AQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 304 RLNVLRLLMPPLRERGADVQLLAEHF-LRCFRQRHSVRARGFAPAALQAMRRFEWPGNVRELLNRVQRAAIM---AEGEL 379
Cdd:PRK11608 168 RLAFDVVQLPPLRERQSDIMLMAEHFaIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRhgtSEYPL 247
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1539067939 380 -------------ISERDLELGASVAVLPgAMLHDARGQAERDVLLQTLRQTGYNVSECARQMQISRVTVYRLCRKHRL 445
Cdd:PRK11608 248 dniiidpfkrrpaEEAIAVSETTSLPTLP-LDLREWQHQQEKELLQRSLQQAKFNQKRAAELLGLTYHQLRALLKKHQI 325
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
160-416 |
1.07e-70 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 232.65 E-value: 1.07e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 160 KFAPVELPVLVTGETGTGKELAAHALHALSGRAGRPFIAVNCGAIPANLVQSELFGHERGSFTGADKRQIGVFESAHGGT 239
Cdd:PRK10820 222 KLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANGGS 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 240 VFLDEVGDLPSEAQTSLLRVLQEGTFERVGSSQPLRADVRVLAATHVELEHAVAQGRFRSDLYYRLNVLRLLMPPLRERG 319
Cdd:PRK10820 302 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRP 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 320 ADVQLLAEHFLRCFRQRHSVRARGFAPAALQAMRRFEWPGNVRELLNRVQRAAIMAEGELISERDL---ELGASVAVLPG 396
Cdd:PRK10820 382 QDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQLEGYELRPQDIllpDYDAAVAVGED 461
|
250 260
....*....|....*....|...
gi 1539067939 397 AM---LHDARGQAERDVLLQTLR 416
Cdd:PRK10820 462 AMegsLDEITSRFERSVLTRLYR 484
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
143-446 |
5.22e-62 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 212.23 E-value: 5.22e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 143 ALIGESAALHAVRTVLHKFAPVELPVLVTGETGTGKELAAHALHALSGRAGRPFIAVNCGAIPANLVQSELFGHERgsfT 222
Cdd:PRK11388 326 HMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDR---T 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 223 GADKRQIGVFESAHGGTVFLDEVGDLPSEAQTSLLRVLQEGTFERVGSSQPLRADVRVLAATHVELEHAVAQGRFRSDLY 302
Cdd:PRK11388 403 DSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLY 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 303 YRLNVLRLLMPPLRERGADVQLLAEHFLRCFRQRHSVRARgFAPAALQAMRRFEWPGNVRELLNRVQRAAIMAEGELISE 382
Cdd:PRK11388 483 YALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSYRWPGNDFELRSVIENLALSSDNGRIRL 561
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1539067939 383 RDL--------ELGASVAVLPGAMLHDArgQAERDVLLQTLRQTGYNVSECARQMQISRVTVYRLCRKHRLE 446
Cdd:PRK11388 562 SDLpehlfteqATDDVSATRLSTSLSLA--ELEKEAIINAAQVCGGRIQEMAALLGIGRTTLWRKMKQHGID 631
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
167-382 |
1.22e-37 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 143.82 E-value: 1.22e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 167 PVLVTGETGTGKELAA-------HALHALSGRagrpFIAVNCGAIPANLVQSELFGHERGSFTGADKRQIGVFESAHGGT 239
Cdd:COG4650 210 PILLTGPTGAGKSQLArriyelkKARHQVSGR----FVEVNCATLRGDGAMSALFGHVKGAFTGAVSDRAGLLRSADGGV 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 240 VFLDEVGDLPSEAQTSLLRVLQEGTFERVGSSQPLRADVRVLAATHVELEHAVAQGRFRSDLYYRLNVLRLLMPPLRERG 319
Cdd:COG4650 286 LFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLLARINLWTFRLPGLAERR 365
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1539067939 320 ADVQLLAEHFLRCFRQRHSVRARgFAPAALQAMRRFE------WPGNVRELLNRVQRAAIMAEGELISE 382
Cdd:COG4650 366 EDIEPNLDYELARFAREQGRRVR-FNKEARARYLAFAtspealWSGNFRDLNASVTRMATLAEGGRITV 433
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
166-369 |
1.25e-27 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 116.36 E-value: 1.25e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 166 LPVLVTGETGTGKELAAHALHALSGRAGR-----PFIAVNCgAIPAN---LVQSELFGHERGSFTGADKRQIGVFESAHG 237
Cdd:COG1221 131 LHTLILGPTGVGKSFFAELMYEYAIEIGVlpedaPFVVFNC-ADYANnpqLLMSQLFGYVKGAFTGADKDKEGLIEKADG 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 238 GTVFLDEVGDLPSEAQTSLLRVLQEGTFERVGSSQPLR-ADVRVLAATHVELEHAvaqgrfrsdlyyrlnvlrLL----- 311
Cdd:COG1221 210 GILFLDEVHRLPPEGQEMLFTFMDKGIYRRLGETEKTRkANVRIIFATTEDPESS------------------LLktflr 271
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1539067939 312 -------MPPLRERGADVQL-LAEHFLR--CFRQRHSVRARgfaPAALQAMRRFEWPGNVRELLNRVQ 369
Cdd:COG1221 272 ripmvikLPSLEERSLEERLeLIKHFFKeeAKRLNKPIKVS---KEVLKALLLYDCPGNIGQLKSDIQ 336
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
145-314 |
3.98e-24 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 97.60 E-value: 3.98e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 145 IGESAALHAVRTVLhkFAPVELPVLVTGETGTGKELAAHALHALSGRAGRPFIAVNCGAIPANLVQSELFGHErgsftgA 224
Cdd:cd00009 1 VGQEEAIEALREAL--ELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------L 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 225 DKRQIGVFESAHGGTVFLDEVGDLPSEAQTSLLRVLQEGTFERVGssqplRADVRVLAATHVELEhavaqGRFRSDLYYR 304
Cdd:cd00009 73 VRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRID-----RENVRVIGATNRPLL-----GDLDRALYDR 142
|
170
....*....|
gi 1539067939 305 LNvLRLLMPP 314
Cdd:cd00009 143 LD-IRIVIPL 151
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
145-315 |
3.07e-21 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 89.32 E-value: 3.07e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 145 IGESAALHAVRTVLHKFAPVELPVLVTGETGTGKELAAHALHALSGRAGRPFIAVNCGAIPANLvqselfghergsftga 224
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLEL---------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 225 dkrqigvFESAHGGTVFLDEVGDLPSEAQTSLLRVLQEGTfervgssqplRADVRVLAATHVELEHAVAQGRFRSDLYYR 304
Cdd:pfam14532 65 -------LEQAKGGTLYLKDIADLSKALQKGLLLLLAKAE----------GYRVRLVCTSSKDLPQLAAAGLFDEQLYFE 127
|
170
....*....|.
gi 1539067939 305 LNVLRLLMPPL 315
Cdd:pfam14532 128 LSALRLHVPPL 138
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
167-305 |
3.76e-12 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 63.93 E-value: 3.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 167 PVLVTGETGTGKELAAHALHALSGRAGRPFIAVNCGAIPANLVQ--SELFGHERGSFTGADKRQIGVFESAHG---GTVF 241
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDqlLLIIVGGKKASGSGELRLRLALALARKlkpDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1539067939 242 LDEVGDLPSEAQTSLLRVLQEgtfERVGSSQPLRADVRVLAATHVE--LEHAVAQGRFRSDLYYRL 305
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNDEkdLGPALLRRRFDRRIVLLL 146
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
167-285 |
3.30e-09 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 54.99 E-value: 3.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 167 PVLVTGETGTGK-ELAAHALHALSGRagrPFIAVNCgaiPANLVQSELFGHeRGSFTGADKRQIGVFESA--HGGTVFLD 243
Cdd:pfam07728 1 GVLLVGPPGTGKtELAERLAAALSNR---PVFYVQL---TRDTTEEDLFGR-RNIDPGGASWVDGPLVRAarEGEIAVLD 73
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1539067939 244 EVGDLPSEAQTSLLRVLQEGTF---ERVGSSQPLRADVRVLAATH 285
Cdd:pfam07728 74 EINRANPDVLNSLLSLLDERRLllpDGGELVKAAPDGFRLIATMN 118
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
168-285 |
7.29e-04 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 39.50 E-value: 7.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 168 VLVTGETGTGKELAAhalHALSGRAGRPFIAVNCgaipanlvqSELFGHERGSftgADKRQIGVFESAHGGT---VFLDE 244
Cdd:pfam00004 1 LLLYGPPGTGKTTLA---KAVAKELGAPFIEISG---------SELVSKYVGE---SEKRLRELFEAAKKLApcvIFIDE 65
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1539067939 245 V-----------GDLPSEAQTSLLRVLQEGtfervgssQPLRADVRVLAATH 285
Cdd:pfam00004 66 IdalagsrgsggDSESRRVVNQLLTELDGF--------TSSNSKVIVIAATN 109
|
|
| RPT1 |
COG1222 |
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
168-386 |
9.13e-03 |
|
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 38.06 E-value: 9.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 168 VLVTGETGTGKELAAhalHALSGRAGRPFIAVNcgaiPANLVQselfghergSFTGADKRQIG-VFESA--HGGTV-FLD 243
Cdd:COG1222 115 VLLYGPPGTGKTLLA---KAVAGELGAPFIRVR----GSELVS---------KYIGEGARNVReVFELAreKAPSIiFID 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 244 EV-------GDLPS--EAQTSLLRVLQE--GtFERvgssqplRADVRVLAAT-HVE-LEHAV-AQGRF-------RSDLY 302
Cdd:COG1222 179 EIdaiaarrTDDGTsgEVQRTVNQLLAEldG-FES-------RGDVLIIAATnRPDlLDPALlRPGRFdrvievpLPDEE 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539067939 303 YRLNVLRLLMPPLR-ERGADVQLLAEhflrcfrqrhsvRARGFAPAALQAmrrfewpgnvreLLNRVQRAAIMAEGELIS 381
Cdd:COG1222 251 AREEILKIHLRDMPlADDVDLDKLAK------------LTEGFSGADLKA------------IVTEAGMFAIREGRDTVT 306
|
....*
gi 1539067939 382 ERDLE 386
Cdd:COG1222 307 MEDLE 311
|
|
| |
