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Conserved domains on  [gi|1553005707|ref|WP_127472098|]
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phage anti-RecBCD protein, partial [Escherichia coli]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Anti-RecBCD_p2 super family cl12609
Bacteriophage P22, anti-RecBCD protein 2; This phage protein modulates the activity of the ...
 1-97 8.25e-36

Bacteriophage P22, anti-RecBCD protein 2; This phage protein modulates the activity of the host recBCD nuclease promoting phage growth and recombination, and protects the linear double stranded DNA from exonuclease degradation.


The actual alignment was detected with superfamily member pfam11043:

Pssm-ID: 287956  Cd Length: 97  Bit Score: 117.15  E-value: 8.25e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1553005707  1 MPAPLYGADDPRNCSGSSKAEVLENIKNNFDTFIDLPPETKAERMYRRDIQLALKDEKDRTNETAMRPLRKATIDKFPEy 80
Cdd:pfam11043  1 MPAPLYGADDPRRCSGNSVSEVLDKFRKNYDLIMSLPQETKEEKEFRHCIWLAEKEERERIYQTAIRPFRKATYTKFIE- 79

                         90
                 ....*....|....*..
gi 1553005707 81 IDPRLRNYRSRYGAISN 97
Cdd:pfam11043 80 IDPRLRDYRSRYGAISN 96
 
Name Accession Description Interval E-value
Anti-RecBCD_p2 pfam11043
Bacteriophage P22, anti-RecBCD protein 2; This phage protein modulates the activity of the ...
 1-97 8.25e-36

Bacteriophage P22, anti-RecBCD protein 2; This phage protein modulates the activity of the host recBCD nuclease promoting phage growth and recombination, and protects the linear double stranded DNA from exonuclease degradation.


Pssm-ID: 287956  Cd Length: 97  Bit Score: 117.15  E-value: 8.25e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1553005707  1 MPAPLYGADDPRNCSGSSKAEVLENIKNNFDTFIDLPPETKAERMYRRDIQLALKDEKDRTNETAMRPLRKATIDKFPEy 80
Cdd:pfam11043  1 MPAPLYGADDPRRCSGNSVSEVLDKFRKNYDLIMSLPQETKEEKEFRHCIWLAEKEERERIYQTAIRPFRKATYTKFIE- 79

                         90
                 ....*....|....*..
gi 1553005707 81 IDPRLRNYRSRYGAISN 97
Cdd:pfam11043 80 IDPRLRDYRSRYGAISN 96
 
Name Accession Description Interval E-value
Anti-RecBCD_p2 pfam11043
Bacteriophage P22, anti-RecBCD protein 2; This phage protein modulates the activity of the ...
 1-97 8.25e-36

Bacteriophage P22, anti-RecBCD protein 2; This phage protein modulates the activity of the host recBCD nuclease promoting phage growth and recombination, and protects the linear double stranded DNA from exonuclease degradation.


Pssm-ID: 287956  Cd Length: 97  Bit Score: 117.15  E-value: 8.25e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1553005707  1 MPAPLYGADDPRNCSGSSKAEVLENIKNNFDTFIDLPPETKAERMYRRDIQLALKDEKDRTNETAMRPLRKATIDKFPEy 80
Cdd:pfam11043  1 MPAPLYGADDPRRCSGNSVSEVLDKFRKNYDLIMSLPQETKEEKEFRHCIWLAEKEERERIYQTAIRPFRKATYTKFIE- 79

                         90
                 ....*....|....*..
gi 1553005707 81 IDPRLRNYRSRYGAISN 97
Cdd:pfam11043 80 IDPRLRDYRSRYGAISN 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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