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Conserved domains on  [gi|1553351344|ref|WP_127755568|]
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MULTISPECIES: pyridoxamine 5'-phosphate oxidase family protein [Rhizobium/Agrobacterium group]

Protein Classification

pyridoxamine 5'-phosphate oxidase family protein( domain architecture ID 11467517)

pyridoxamine 5'-phosphate oxidase family protein binds FMN and FAD; similar to Bacillus subtilis general stress protein 26 that is induced by heat shock, salt stress, oxidative stress, glucose limitation and oxygen limitation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pyrid_ox_like super family cl38986
Pyridoxamine 5'-phosphate oxidase like; This domain, approximately 140 residues in length, is ...
 11-157 9.57e-52

Pyridoxamine 5'-phosphate oxidase like; This domain, approximately 140 residues in length, is mainly found in general stress proteins in various Xanthomonas species. It is composed of a six-stranded antiparallel beta-barrel flanked by five alpha-helices and can bind to FMN and FAD, suggesting that it may help the bacteria to react against the oxidative stress induced by the defense mechanisms of the plant.


The actual alignment was detected with superfamily member pfam16242:

Pssm-ID: 435234 [Multi-domain]  Cd Length: 149  Bit Score: 162.11  E-value: 9.57e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1553351344  11 PARQLWDEINSVHAGMLGL--EGLHNHMQPMAPHADPKTNTIWFFSKKDTDLVKSLKSGSRAHFCVVGKDHDYHACLSGI 88
Cdd:pfam16242   2 AVEKLWELIKDIRTAMLTTttAGGGLHSRPMATQEVEFDGDLWFFTDKDSDKVDEIREDPQVNVAFSDPSKNNYVSVSGT 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1553351344  89 LEARDDKAKIDEYWNSVTAAWYEHGKSDPQLTMLALHVDDADIWASTDSTLKFGWEIAKANMsDDKTPD 157
Cdd:pfam16242  82 AEVVRDRAKIDELWNPVAKAWFPEGKDDPNITLLKVTPKEAEYWDSPGGKLKFGIKMAKAAV-TGKKPD 149
 
Name Accession Description Interval E-value
Pyrid_ox_like pfam16242
Pyridoxamine 5'-phosphate oxidase like; This domain, approximately 140 residues in length, is ...
 11-157 9.57e-52

Pyridoxamine 5'-phosphate oxidase like; This domain, approximately 140 residues in length, is mainly found in general stress proteins in various Xanthomonas species. It is composed of a six-stranded antiparallel beta-barrel flanked by five alpha-helices and can bind to FMN and FAD, suggesting that it may help the bacteria to react against the oxidative stress induced by the defense mechanisms of the plant.


Pssm-ID: 435234 [Multi-domain]  Cd Length: 149  Bit Score: 162.11  E-value: 9.57e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1553351344  11 PARQLWDEINSVHAGMLGL--EGLHNHMQPMAPHADPKTNTIWFFSKKDTDLVKSLKSGSRAHFCVVGKDHDYHACLSGI 88
Cdd:pfam16242   2 AVEKLWELIKDIRTAMLTTttAGGGLHSRPMATQEVEFDGDLWFFTDKDSDKVDEIREDPQVNVAFSDPSKNNYVSVSGT 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1553351344  89 LEARDDKAKIDEYWNSVTAAWYEHGKSDPQLTMLALHVDDADIWASTDSTLKFGWEIAKANMsDDKTPD 157
Cdd:pfam16242  82 AEVVRDRAKIDELWNPVAKAWFPEGKDDPNITLLKVTPKEAEYWDSPGGKLKFGIKMAKAAV-TGKKPD 149
YzzA COG3871
General stress protein 26 (function unknown) [Function unknown];
5-134 7.30e-35

General stress protein 26 (function unknown) [Function unknown];


Pssm-ID: 443080 [Multi-domain]  Cd Length: 132  Bit Score: 118.50  E-value: 7.30e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1553351344   5 TEAREAPARQLWDEINSVHAGMLGLEGLHN--HMQPMAPHADPKTNTIWFFSKKDTDLVKSLKSGSRAHFCVVGKDHDYH 82
Cdd:COG3871     1 TTDDEELEEKLWELLEDIRTAMLATVDADGrpHSRPMWFQVDVDDGTLWFFTSRDSAKVRNIRRDPRVSLSFADPGDDRY 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1553351344  83 ACLSGILEARDDKAKIDEYWNSVTAAWYEHGKSDPQLTMLALHVDDADIWAS 134
Cdd:COG3871    81 VSVEGTAEIVDDRAKIDELWNPLAEAWFPDGPDDPDLVLLRVTPERAEYWDS 132
 
Name Accession Description Interval E-value
Pyrid_ox_like pfam16242
Pyridoxamine 5'-phosphate oxidase like; This domain, approximately 140 residues in length, is ...
 11-157 9.57e-52

Pyridoxamine 5'-phosphate oxidase like; This domain, approximately 140 residues in length, is mainly found in general stress proteins in various Xanthomonas species. It is composed of a six-stranded antiparallel beta-barrel flanked by five alpha-helices and can bind to FMN and FAD, suggesting that it may help the bacteria to react against the oxidative stress induced by the defense mechanisms of the plant.


Pssm-ID: 435234 [Multi-domain]  Cd Length: 149  Bit Score: 162.11  E-value: 9.57e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1553351344  11 PARQLWDEINSVHAGMLGL--EGLHNHMQPMAPHADPKTNTIWFFSKKDTDLVKSLKSGSRAHFCVVGKDHDYHACLSGI 88
Cdd:pfam16242   2 AVEKLWELIKDIRTAMLTTttAGGGLHSRPMATQEVEFDGDLWFFTDKDSDKVDEIREDPQVNVAFSDPSKNNYVSVSGT 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1553351344  89 LEARDDKAKIDEYWNSVTAAWYEHGKSDPQLTMLALHVDDADIWASTDSTLKFGWEIAKANMsDDKTPD 157
Cdd:pfam16242  82 AEVVRDRAKIDELWNPVAKAWFPEGKDDPNITLLKVTPKEAEYWDSPGGKLKFGIKMAKAAV-TGKKPD 149
YzzA COG3871
General stress protein 26 (function unknown) [Function unknown];
5-134 7.30e-35

General stress protein 26 (function unknown) [Function unknown];


Pssm-ID: 443080 [Multi-domain]  Cd Length: 132  Bit Score: 118.50  E-value: 7.30e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1553351344   5 TEAREAPARQLWDEINSVHAGMLGLEGLHN--HMQPMAPHADPKTNTIWFFSKKDTDLVKSLKSGSRAHFCVVGKDHDYH 82
Cdd:COG3871     1 TTDDEELEEKLWELLEDIRTAMLATVDADGrpHSRPMWFQVDVDDGTLWFFTSRDSAKVRNIRRDPRVSLSFADPGDDRY 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1553351344  83 ACLSGILEARDDKAKIDEYWNSVTAAWYEHGKSDPQLTMLALHVDDADIWAS 134
Cdd:COG3871    81 VSVEGTAEIVDDRAKIDELWNPLAEAWFPDGPDDPDLVLLRVTPERAEYWDS 132
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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