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Conserved domains on  [gi|1553353908|ref|WP_127758132|]
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MULTISPECIES: OB-fold-containig protein [Rhizobium/Agrobacterium group]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF1449 super family cl06355
Protein of unknown function (DUF1449); This family consists of several bacterial proteins of ...
11-203 4.90e-46

Protein of unknown function (DUF1449); This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam07290:

Pssm-ID: 429387  Cd Length: 199  Bit Score: 151.25  E-value: 4.90e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1553353908  11 PFWIALLTVFGLGIVELVSVLLGVSASGLLDDNFSYHAPGDTEA---GLLGSWMSWLNAGGVPLLVLAVILLSAFSVAGF 87
Cdd:pfam07290   3 PFTVALALMLLIALLEGVGLLIGLGLSGLLDSLPDADADFDPDAdgdGALSRLLGWLGIGRVPLLILLVLFLTGFGLSGL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1553353908  88 FIQGIASATPLGPLPPYLAMTGAIAAALPATRSLSRAVAKVIPRDETNALEQTDFLGLVGTVTIGPLDQGKPGTVRVKDR 167
Cdd:pfam07290  83 ILQSLAASLLGALLPAWLAAPAALLAALPAVRFLGRLLAKILPKDETSAVSEDSLVGRVATITLGTARRGSPAEARVRDR 162
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1553353908 168 HENIHFLRAQAASGHTI-DTGAQVLIVDGADGLFQAI 203
Cdd:pfam07290 163 HGQTHYVMVEPDDDDEVfEQGSEVLLVRKEGARFRAI 199
 
Name Accession Description Interval E-value
DUF1449 pfam07290
Protein of unknown function (DUF1449); This family consists of several bacterial proteins of ...
11-203 4.90e-46

Protein of unknown function (DUF1449); This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.


Pssm-ID: 429387  Cd Length: 199  Bit Score: 151.25  E-value: 4.90e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1553353908  11 PFWIALLTVFGLGIVELVSVLLGVSASGLLDDNFSYHAPGDTEA---GLLGSWMSWLNAGGVPLLVLAVILLSAFSVAGF 87
Cdd:pfam07290   3 PFTVALALMLLIALLEGVGLLIGLGLSGLLDSLPDADADFDPDAdgdGALSRLLGWLGIGRVPLLILLVLFLTGFGLSGL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1553353908  88 FIQGIASATPLGPLPPYLAMTGAIAAALPATRSLSRAVAKVIPRDETNALEQTDFLGLVGTVTIGPLDQGKPGTVRVKDR 167
Cdd:pfam07290  83 ILQSLAASLLGALLPAWLAAPAALLAALPAVRFLGRLLAKILPKDETSAVSEDSLVGRVATITLGTARRGSPAEARVRDR 162
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1553353908 168 HENIHFLRAQAASGHTI-DTGAQVLIVDGADGLFQAI 203
Cdd:pfam07290 163 HGQTHYVMVEPDDDDEVfEQGSEVLLVRKEGARFRAI 199
 
Name Accession Description Interval E-value
DUF1449 pfam07290
Protein of unknown function (DUF1449); This family consists of several bacterial proteins of ...
11-203 4.90e-46

Protein of unknown function (DUF1449); This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.


Pssm-ID: 429387  Cd Length: 199  Bit Score: 151.25  E-value: 4.90e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1553353908  11 PFWIALLTVFGLGIVELVSVLLGVSASGLLDDNFSYHAPGDTEA---GLLGSWMSWLNAGGVPLLVLAVILLSAFSVAGF 87
Cdd:pfam07290   3 PFTVALALMLLIALLEGVGLLIGLGLSGLLDSLPDADADFDPDAdgdGALSRLLGWLGIGRVPLLILLVLFLTGFGLSGL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1553353908  88 FIQGIASATPLGPLPPYLAMTGAIAAALPATRSLSRAVAKVIPRDETNALEQTDFLGLVGTVTIGPLDQGKPGTVRVKDR 167
Cdd:pfam07290  83 ILQSLAASLLGALLPAWLAAPAALLAALPAVRFLGRLLAKILPKDETSAVSEDSLVGRVATITLGTARRGSPAEARVRDR 162
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1553353908 168 HENIHFLRAQAASGHTI-DTGAQVLIVDGADGLFQAI 203
Cdd:pfam07290 163 HGQTHYVMVEPDDDDEVfEQGSEVLLVRKEGARFRAI 199
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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