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Conserved domains on  [gi|1559336626|ref|WP_128152446|]
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uroporphyrinogen-III C-methyltransferase [Apibacter raozihei]

Protein Classification

uroporphyrinogen-III C-methyltransferase( domain architecture ID 10000225)

uroporphyrinogen-III C-methyltransferase catalyzes two sequential methylation reactions (on C2 and C7) of uroporphyrinogen-III (UROGEN) to yield precorrin-2

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CysG COG0007
Uroporphyrinogen-III methylase (siroheme synthase) [Coenzyme transport and metabolism]; ...
10-246 1.56e-66

Uroporphyrinogen-III methylase (siroheme synthase) [Coenzyme transport and metabolism]; Uroporphyrinogen-III methylase (siroheme synthase) is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


:

Pssm-ID: 439778 [Multi-domain]  Cd Length: 245  Bit Score: 206.46  E-value: 1.56e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  10 KVNIVGIGPGHPDLLTIQATQILEQTDVILYDCLANQCILEDQRFQAKIEFVEKD-----MTFQKMIDIMENYYLEGKKV 84
Cdd:COG0007     3 KVYLVGAGPGDPDLLTLKALRALQQADVVLYDRLVSPEILALARPDAELIYVGKRggrhsLPQEEINALLVELARAGKRV 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  85 ARLRSGDSMMFNSGGIESKILKERKIPFDVIPGITAAGAASSVFSIPTTELNESDAlVHFIS-HDTPENFAQirDLTVLF 163
Cdd:COG0007    83 VRLKGGDPFVFGRGGEEAEALAAAGIPFEVVPGITAAIAAPAYAGIPLTHRGVASS-VTFVTgHEKDGKLDL--DWAALA 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626 164 KYGTTIALYMANQNLTRILNIMKEENVDQNLPVVVVSRVSMPEETAIYTHLSELLGTLETNQLRSPMVFFIGKHVKiLND 243
Cdd:COG0007   160 RPGGTLVIYMGVKNLPEIAAALIAAGRSPDTPVAVIENGTTPDQRVVTGTLATLAELAAEAGLKSPALIVVGEVVA-LRE 238

                  ...
gi 1559336626 244 KLN 246
Cdd:COG0007   239 KLS 241
 
Name Accession Description Interval E-value
CysG COG0007
Uroporphyrinogen-III methylase (siroheme synthase) [Coenzyme transport and metabolism]; ...
10-246 1.56e-66

Uroporphyrinogen-III methylase (siroheme synthase) [Coenzyme transport and metabolism]; Uroporphyrinogen-III methylase (siroheme synthase) is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 439778 [Multi-domain]  Cd Length: 245  Bit Score: 206.46  E-value: 1.56e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  10 KVNIVGIGPGHPDLLTIQATQILEQTDVILYDCLANQCILEDQRFQAKIEFVEKD-----MTFQKMIDIMENYYLEGKKV 84
Cdd:COG0007     3 KVYLVGAGPGDPDLLTLKALRALQQADVVLYDRLVSPEILALARPDAELIYVGKRggrhsLPQEEINALLVELARAGKRV 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  85 ARLRSGDSMMFNSGGIESKILKERKIPFDVIPGITAAGAASSVFSIPTTELNESDAlVHFIS-HDTPENFAQirDLTVLF 163
Cdd:COG0007    83 VRLKGGDPFVFGRGGEEAEALAAAGIPFEVVPGITAAIAAPAYAGIPLTHRGVASS-VTFVTgHEKDGKLDL--DWAALA 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626 164 KYGTTIALYMANQNLTRILNIMKEENVDQNLPVVVVSRVSMPEETAIYTHLSELLGTLETNQLRSPMVFFIGKHVKiLND 243
Cdd:COG0007   160 RPGGTLVIYMGVKNLPEIAAALIAAGRSPDTPVAVIENGTTPDQRVVTGTLATLAELAAEAGLKSPALIVVGEVVA-LRE 238

                  ...
gi 1559336626 244 KLN 246
Cdd:COG0007   239 KLS 241
SUMT cd11642
Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen ...
14-238 3.11e-59

Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT); SUMT is an enzyme of the cobalamin and siroheme biosynthetic pathway. It catalyzes the first of three steps leading to the formation of siroheme from uroporphyrinogen III; it transfers two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. Precorrin-2 is also a precursor for the biosynthesis of vitamin B12, coenzyme F430, siroheme and heme d1. This family includes proteins in which the SUMT domain is fused to other functional domains, such as to a uroporphyrinogen-III synthase domain to form bifunctional uroporphyrinogen-III methylase/uroporphyrinogen-III synthase, or to a dual function dehydrogenase-chelatase domain, as in the case of the multifunctional S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase/dehydrogenase/ferrochelatase CysG, which catalyzes all three steps that transform uroporphyrinogen III into siroheme.


Pssm-ID: 381169  Cd Length: 228  Bit Score: 187.26  E-value: 3.11e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  14 VGIGPGHPDLLTIQATQILEQTDVILYDCLANQCILEDQRFQAKIEFVEK-----DMTfQKMI-DIMENYYLEGKKVARL 87
Cdd:cd11642     1 VGAGPGDPDLLTLKALRALQQADVVLYDRLVSPEILALAPPGAELIYVGKrpgrhSVP-QEEInELLVELAREGKRVVRL 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  88 RSGDSMMFNSGGIESKILKERKIPFDVIPGITAAGAASSVFSIPTTELNESDAlVHFIS-HDTPEnfAQIRDLTVLFKYG 166
Cdd:cd11642    80 KGGDPFVFGRGGEEIEALREAGIPFEVVPGITSAIAAAAYAGIPLTHRGVASS-VTFVTgHEADG--KLPDDDAALARPG 156
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1559336626 167 TTIALYMANQNLTRILNIMKEENVDQNLPVVVVSRVSMPEETAIYTHLSELLGTLETNQLRSPMVFFIGKHV 238
Cdd:cd11642   157 GTLVIYMGVSNLEEIAERLIAAGLPPDTPVAIVENATTPDQRVVVGTLAELAEKAAEAGIRSPALIVVGEVV 228
cobA_cysG_Cterm TIGR01469
uroporphyrin-III C-methyltransferase; This model represents enzymes, or enzyme domains, with ...
10-240 2.38e-45

uroporphyrin-III C-methyltransferase; This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 273643  Cd Length: 236  Bit Score: 151.99  E-value: 2.38e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  10 KVNIVGIGPGHPDLLTIQATQILEQTDVILYDCLANQCILEDQRFQAKIEFVEKDMTFQKMI-----DIMENYYLEGKKV 84
Cdd:TIGR01469   1 KVYLVGAGPGDPELLTLKALRLLQEADVVLYDALVSPEILAYAPPQAELIDVGKRPGCHSKKqeeinRLLVELAREGKKV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  85 ARLRSGDSMMFNSGGIESKILKERKIPFDVIPGITAAGAASSVFSIPTTELNESDALVHFISHDTPENFAQIrDLTVLFK 164
Cdd:TIGR01469  81 VRLKGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAIAAAAYAGIPLTHRGVASSVTFVTGHEADDKALEV-DWEALAK 159
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1559336626 165 YGTTIALYMANQNLTRILNIMKEENVDQNLPVVVVSRVSMPEETAIYTHLSELLGTLETNQLRSPMVFFIGKHVKI 240
Cdd:TIGR01469 160 GAGTLVIYMGVRNLPEIAKELIEHGRSPDTPVAVVEWATTPNQRVLIGTLGDLAEKAAEANLKSPALIVIGEVVAL 235
PRK06136 PRK06136
uroporphyrinogen-III C-methyltransferase;
10-235 1.82e-40

uroporphyrinogen-III C-methyltransferase;


Pssm-ID: 235711  Cd Length: 249  Bit Score: 139.58  E-value: 1.82e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  10 KVNIVGIGPGHPDLLTIQATQILEQTDVILYDCLANQCILEDQRFQAKIEFVEK---------DMTFQKMIDimenYYLE 80
Cdd:PRK06136    4 KVYLVGAGPGDPDLITLKGVRLLEQADVVLYDDLVSPEILAYAKPDAELIYVGKragrhstkqEEINRLLVD----YARK 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  81 GKKVARLRSGDSMMFNSGGIESKILKERKIPFDVIPGITAAGAASSVFSIPTTELNESDALVHFISHDTPENFAQIRDLT 160
Cdd:PRK06136   80 GKVVVRLKGGDPFVFGRGGEELEALEAAGIPYEVVPGITAAIAAAAYAGIPLTHRGVARSVTFVTGHEAAGKLEPEVNWS 159
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1559336626 161 VLFKYGTTIALYMANQNLTRILNIMKEENVDQNLPVVVVSRVSMPEETAIYTHLSELLGTLETNQLRSPMVFFIG 235
Cdd:PRK06136  160 ALADGADTLVIYMGVRNLPYIAAQLLAAGRAPDTPVAIIENGTTPEQRVVRGTLGTIAEGAAAEDIQSPAIIVIG 234
TP_methylase pfam00590
Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of ...
10-217 4.57e-40

Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of diverse substrates. This family includes a related group of bacterial proteins of unknown function. This family includes the methylase Dipthine synthase.


Pssm-ID: 425769 [Multi-domain]  Cd Length: 209  Bit Score: 137.47  E-value: 4.57e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  10 KVNIVGIGPGHPDLLTIQATQILEQTDVILYDC-LANQCIL----EDQRFQAKIEFVEKDMTFQKMIDIMENYYLEGKKV 84
Cdd:pfam00590   1 KLYLVGVGPGDPDLLTLRALRALKEADVVLGDDsRALEILLdllpEDLYFPMTEDKEPLEEAYEEIAEALAAALRAGKDV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  85 ARLRSGDSMMFNSGGIESKILKERKIPFDVIPGITAAGAASSVFSIPTTElnesDALVHFISHDTPENFAQIRDLTVLFK 164
Cdd:pfam00590  81 ARLVSGDPLVYGTGSYLVEALRAAGIDVEVVPGVSSAQAAAARLGIPLTE----GGEVLSVLFLPGLARIELRLLEALLA 156
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1559336626 165 YGTTIALYMANQNLTRILNIMKEEnVDQNLPVVVVSRVSMPEETAIYTHLSEL 217
Cdd:pfam00590 157 NGDTVVLLYGPRRLAELAELLLEL-YPDTTPVAVVERAGTPDEKVVRGTLGEL 208
 
Name Accession Description Interval E-value
CysG COG0007
Uroporphyrinogen-III methylase (siroheme synthase) [Coenzyme transport and metabolism]; ...
10-246 1.56e-66

Uroporphyrinogen-III methylase (siroheme synthase) [Coenzyme transport and metabolism]; Uroporphyrinogen-III methylase (siroheme synthase) is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 439778 [Multi-domain]  Cd Length: 245  Bit Score: 206.46  E-value: 1.56e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  10 KVNIVGIGPGHPDLLTIQATQILEQTDVILYDCLANQCILEDQRFQAKIEFVEKD-----MTFQKMIDIMENYYLEGKKV 84
Cdd:COG0007     3 KVYLVGAGPGDPDLLTLKALRALQQADVVLYDRLVSPEILALARPDAELIYVGKRggrhsLPQEEINALLVELARAGKRV 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  85 ARLRSGDSMMFNSGGIESKILKERKIPFDVIPGITAAGAASSVFSIPTTELNESDAlVHFIS-HDTPENFAQirDLTVLF 163
Cdd:COG0007    83 VRLKGGDPFVFGRGGEEAEALAAAGIPFEVVPGITAAIAAPAYAGIPLTHRGVASS-VTFVTgHEKDGKLDL--DWAALA 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626 164 KYGTTIALYMANQNLTRILNIMKEENVDQNLPVVVVSRVSMPEETAIYTHLSELLGTLETNQLRSPMVFFIGKHVKiLND 243
Cdd:COG0007   160 RPGGTLVIYMGVKNLPEIAAALIAAGRSPDTPVAVIENGTTPDQRVVTGTLATLAELAAEAGLKSPALIVVGEVVA-LRE 238

                  ...
gi 1559336626 244 KLN 246
Cdd:COG0007   239 KLS 241
SUMT cd11642
Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen ...
14-238 3.11e-59

Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT); SUMT is an enzyme of the cobalamin and siroheme biosynthetic pathway. It catalyzes the first of three steps leading to the formation of siroheme from uroporphyrinogen III; it transfers two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. Precorrin-2 is also a precursor for the biosynthesis of vitamin B12, coenzyme F430, siroheme and heme d1. This family includes proteins in which the SUMT domain is fused to other functional domains, such as to a uroporphyrinogen-III synthase domain to form bifunctional uroporphyrinogen-III methylase/uroporphyrinogen-III synthase, or to a dual function dehydrogenase-chelatase domain, as in the case of the multifunctional S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase/dehydrogenase/ferrochelatase CysG, which catalyzes all three steps that transform uroporphyrinogen III into siroheme.


Pssm-ID: 381169  Cd Length: 228  Bit Score: 187.26  E-value: 3.11e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  14 VGIGPGHPDLLTIQATQILEQTDVILYDCLANQCILEDQRFQAKIEFVEK-----DMTfQKMI-DIMENYYLEGKKVARL 87
Cdd:cd11642     1 VGAGPGDPDLLTLKALRALQQADVVLYDRLVSPEILALAPPGAELIYVGKrpgrhSVP-QEEInELLVELAREGKRVVRL 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  88 RSGDSMMFNSGGIESKILKERKIPFDVIPGITAAGAASSVFSIPTTELNESDAlVHFIS-HDTPEnfAQIRDLTVLFKYG 166
Cdd:cd11642    80 KGGDPFVFGRGGEEIEALREAGIPFEVVPGITSAIAAAAYAGIPLTHRGVASS-VTFVTgHEADG--KLPDDDAALARPG 156
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1559336626 167 TTIALYMANQNLTRILNIMKEENVDQNLPVVVVSRVSMPEETAIYTHLSELLGTLETNQLRSPMVFFIGKHV 238
Cdd:cd11642   157 GTLVIYMGVSNLEEIAERLIAAGLPPDTPVAIVENATTPDQRVVVGTLAELAEKAAEAGIRSPALIVVGEVV 228
cobA_cysG_Cterm TIGR01469
uroporphyrin-III C-methyltransferase; This model represents enzymes, or enzyme domains, with ...
10-240 2.38e-45

uroporphyrin-III C-methyltransferase; This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 273643  Cd Length: 236  Bit Score: 151.99  E-value: 2.38e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  10 KVNIVGIGPGHPDLLTIQATQILEQTDVILYDCLANQCILEDQRFQAKIEFVEKDMTFQKMI-----DIMENYYLEGKKV 84
Cdd:TIGR01469   1 KVYLVGAGPGDPELLTLKALRLLQEADVVLYDALVSPEILAYAPPQAELIDVGKRPGCHSKKqeeinRLLVELAREGKKV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  85 ARLRSGDSMMFNSGGIESKILKERKIPFDVIPGITAAGAASSVFSIPTTELNESDALVHFISHDTPENFAQIrDLTVLFK 164
Cdd:TIGR01469  81 VRLKGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAIAAAAYAGIPLTHRGVASSVTFVTGHEADDKALEV-DWEALAK 159
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1559336626 165 YGTTIALYMANQNLTRILNIMKEENVDQNLPVVVVSRVSMPEETAIYTHLSELLGTLETNQLRSPMVFFIGKHVKI 240
Cdd:TIGR01469 160 GAGTLVIYMGVRNLPEIAKELIEHGRSPDTPVAVVEWATTPNQRVLIGTLGDLAEKAAEANLKSPALIVIGEVVAL 235
PRK06136 PRK06136
uroporphyrinogen-III C-methyltransferase;
10-235 1.82e-40

uroporphyrinogen-III C-methyltransferase;


Pssm-ID: 235711  Cd Length: 249  Bit Score: 139.58  E-value: 1.82e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  10 KVNIVGIGPGHPDLLTIQATQILEQTDVILYDCLANQCILEDQRFQAKIEFVEK---------DMTFQKMIDimenYYLE 80
Cdd:PRK06136    4 KVYLVGAGPGDPDLITLKGVRLLEQADVVLYDDLVSPEILAYAKPDAELIYVGKragrhstkqEEINRLLVD----YARK 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  81 GKKVARLRSGDSMMFNSGGIESKILKERKIPFDVIPGITAAGAASSVFSIPTTELNESDALVHFISHDTPENFAQIRDLT 160
Cdd:PRK06136   80 GKVVVRLKGGDPFVFGRGGEELEALEAAGIPYEVVPGITAAIAAAAYAGIPLTHRGVARSVTFVTGHEAAGKLEPEVNWS 159
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1559336626 161 VLFKYGTTIALYMANQNLTRILNIMKEENVDQNLPVVVVSRVSMPEETAIYTHLSELLGTLETNQLRSPMVFFIG 235
Cdd:PRK06136  160 ALADGADTLVIYMGVRNLPYIAAQLLAAGRAPDTPVAIIENGTTPEQRVVRGTLGTIAEGAAAEDIQSPAIIVIG 234
TP_methylase pfam00590
Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of ...
10-217 4.57e-40

Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of diverse substrates. This family includes a related group of bacterial proteins of unknown function. This family includes the methylase Dipthine synthase.


Pssm-ID: 425769 [Multi-domain]  Cd Length: 209  Bit Score: 137.47  E-value: 4.57e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  10 KVNIVGIGPGHPDLLTIQATQILEQTDVILYDC-LANQCIL----EDQRFQAKIEFVEKDMTFQKMIDIMENYYLEGKKV 84
Cdd:pfam00590   1 KLYLVGVGPGDPDLLTLRALRALKEADVVLGDDsRALEILLdllpEDLYFPMTEDKEPLEEAYEEIAEALAAALRAGKDV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  85 ARLRSGDSMMFNSGGIESKILKERKIPFDVIPGITAAGAASSVFSIPTTElnesDALVHFISHDTPENFAQIRDLTVLFK 164
Cdd:pfam00590  81 ARLVSGDPLVYGTGSYLVEALRAAGIDVEVVPGVSSAQAAAARLGIPLTE----GGEVLSVLFLPGLARIELRLLEALLA 156
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1559336626 165 YGTTIALYMANQNLTRILNIMKEEnVDQNLPVVVVSRVSMPEETAIYTHLSEL 217
Cdd:pfam00590 157 NGDTVVLLYGPRRLAELAELLLEL-YPDTTPVAVVERAGTPDEKVVRGTLGEL 208
cobM_cbiF TIGR01465
precorrin-4 C11-methyltransferase; This model represents precorrin-4 C11-methyltransferase, ...
11-235 8.32e-39

precorrin-4 C11-methyltransferase; This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 200107  Cd Length: 247  Bit Score: 135.15  E-value: 8.32e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  11 VNIVGIGPGHPDLLTIQATQILEQTDVILY-DCLANQCILEDQRFQAKIeFVEKDMTFQKMIDIMENYYLEGKKVARLRS 89
Cdd:TIGR01465   1 VYFIGAGPGDPDLITVKGRKLIESADVILYaGSLVPPELLAHCRPGAEV-VNSAGMSLEEIVDIMSDAHREGKDVARLHS 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  90 GDSMMFNSGGIESKILKERKIPFDVIPGITAAGAASSVFSIPTT--ELNESDALVHfISHDTPenFAQIRDLTVLFKYGT 167
Cdd:TIGR01465  80 GDPSIYGAIAEQMRLLEALGIPYEVVPGVSSFFAAAAALGAELTvpEVSQTVILTR-ASGRTP--MPEGEKLADLAKHGA 156
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1559336626 168 TIALYMANQNLTRILNIMKEENVDQNLPVVVVSRVSMPEETAIYTHLSELLGTLETNQLRSPMVFFIG 235
Cdd:TIGR01465 157 TMAIFLSAHILDKVVKELIEHGYSEDTPVAVVYRATWPDEKIVRGTLADLADLVREEGIYRTTLILVG 224
Precorrin-4_C11-MT cd11641
Precorrin-4 C11-methyltransferase (CbiF/CobM); Precorrin-4 C11-methyltransferase participates ...
14-236 1.04e-35

Precorrin-4 C11-methyltransferase (CbiF/CobM); Precorrin-4 C11-methyltransferase participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. In the aerobic pathway, CobM catalyzes the methylation of precorrin-4 at C-11 to yield precorrin-5. In the anaerobic pathway, CibF catalyzes the methylation of cobalt-precorrin-4 to cobalt-precorrin-5. Both CibF and CobM, which are homologous, are included in this model. There are about 30 enzymes involved in vitamin B12 synthetic pathway. The enzymes involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Most of the enzymes are shared in both pathways and several of these enzymes are pathway-specific.


Pssm-ID: 381168 [Multi-domain]  Cd Length: 225  Bit Score: 126.35  E-value: 1.04e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  14 VGIGPGHPDLLTIQATQILEQTDVILY-DCLANQCILEDQRFQAKIeFVEKDMTFQKMIDIMENYYLEGKKVARLRSGDS 92
Cdd:cd11641     1 VGAGPGDPELITVKGARLLEEADVVIYaGSLVPPELLAYAKPGAEI-VDSAGMTLEEIIEVMREAAREGKDVVRLHTGDP 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  93 MMFnsGGI--ESKILKERKIPFDVIPGITAAGAASSVFSIPTTELNESDALVhfIS-----HDTPENfAQIRDLTvlfKY 165
Cdd:cd11641    80 SLY--GAIreQIDALDKLGIPYEVVPGVSSFFAAAAALGTELTLPEVSQTVI--LTrlegrTPVPEG-ESLRELA---KH 151
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1559336626 166 GTTIALYMANQNLTRILNIMKEENVDQNLPVVVVSRVSMPEETAIYTHLSELLGTLETNQLRSPMVFFIGK 236
Cdd:cd11641   152 GATLAIFLSAALIEEVVEELLAGGYPPDTPVAVVYKASWPDEKIIRGTLADLAEKVKEAGITRTALILVGP 222
PLN02625 PLN02625
uroporphyrin-III C-methyltransferase
10-240 2.72e-34

uroporphyrin-III C-methyltransferase


Pssm-ID: 178232 [Multi-domain]  Cd Length: 263  Bit Score: 123.97  E-value: 2.72e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  10 KVNIVGIGPGHPDLLTIQATQILEQTDVILYDCLANQCILEDQRFQAKIEFVEKDMTFQKMI--DIME---NYYLEGKKV 84
Cdd:PLN02625   16 NVFLVGTGPGDPDLLTLKALRLLQTADVVLYDRLVSPDILDLVPPGAELLYVGKRGGYHSRTqeEIHElllSFAEAGKTV 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  85 ARLRSGDSMMFNSGGIESKILKERKIPFDVIPGITAAGAASSVFSIPTT--ELNESdalVHFISHDTPENFAQIRDLTVL 162
Cdd:PLN02625   96 VRLKGGDPLVFGRGGEEMDALRKNGIPVTVVPGITAAIGAPAELGIPLThrGVATS---VRFLTGHDREGGTDPLDVAEA 172
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1559336626 163 -FKYGTTIALYMANQNLTRILNIMKEENVDQNLPVVVVSRVSMPEETAIYTHLSELLGTLETNQLRSPMVFFIGKHVKI 240
Cdd:PLN02625  173 aADPDTTLVVYMGLGTLPSLAEKLIAAGLPPDTPAAAVERGTTPEQRVVFGTLEDIAEDVAAAGLVSPTVIVVGEVVAL 251
CobM COG2875
Precorrin-4 methylase [Coenzyme transport and metabolism]; Precorrin-4 methylase is part of ...
10-236 9.76e-32

Precorrin-4 methylase [Coenzyme transport and metabolism]; Precorrin-4 methylase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 442122 [Multi-domain]  Cd Length: 256  Bit Score: 117.08  E-value: 9.76e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  10 KVNIVGIGPGHPDLLTIQATQILEQTDVILY-DCLANQCILEDQRFQAKIeFVEKDMTFQKMIDIMENYYLEGKKVARLR 88
Cdd:COG2875     4 TVYFVGAGPGDPDLITVKGRRLLEEADVVLYaGSLVPPELLAYCKPGAEI-VDSASMTLEEIIALMKEAAAEGKDVVRLH 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  89 SGDSMMFnsGGI--ESKILKERKIPFDVIPGITAAGAASSVFSIPTTeLNEsdaLVHFI-----SHDTP-------ENFA 154
Cdd:COG2875    83 SGDPSLY--GAIaeQMRRLDALGIPYEVVPGVSAFAAAAAALGRELT-LPE---VSQTViltraEGRTPmpegeslASLA 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626 155 qirdltvlfKYGTTIALYMAnqnLTRILNIMKE--ENVDQNLPVVVVSRVSMPEETAIYTHLSELLGTLETNQLRSPMVF 232
Cdd:COG2875   157 ---------AHGATLAIYLS---AHRIDEVVEEllEGYPPDTPVAVVYRASWPDEKIVRGTLADIAEKVKEAGITRTALI 224

                  ....
gi 1559336626 233 FIGK 236
Cdd:COG2875   225 LVGP 228
cysG PRK10637
siroheme synthase CysG;
10-251 1.49e-26

siroheme synthase CysG;


Pssm-ID: 182606 [Multi-domain]  Cd Length: 457  Bit Score: 106.77  E-value: 1.49e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  10 KVNIVGIGPGHPDLLTIQATQILEQTDVILYDCLANQCILEDQRFQAKIEFVEKDMTF----QKMID-IMENYYLEGKKV 84
Cdd:PRK10637  217 EVVLVGAGPGDAGLLTLKGLQQIQQADVVVYDRLVSDDIMNLVRRDADRVFVGKRAGYhcvpQEEINqILLREAQKGKRV 296
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  85 ARLRSGDSMMFNSGGIESKILKERKIPFDVIPGITAAGAASSVFSIPTTELNESDAlVHFISHDTPENfAQIrDLTVLFK 164
Cdd:PRK10637  297 VRLKGGDPFIFGRGGEELETLCNAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQS-VRLVTGHLKTG-GEL-DWENLAA 373
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626 165 YGTTIALYMANQNLTRILNIMKEENVDQNLPVVVVSRVSMPEETAIYTHLSElLGTLETnQLRSPMVFFIGKHVKiLNDK 244
Cdd:PRK10637  374 EKQTLVFYMGLNQAATIQQKLIEHGMPADMPVALVENGTSVTQRVVSGTLTQ-LGELAQ-QVNSPSLIIVGRVVG-LRDK 450

                  ....*..
gi 1559336626 245 LNIIQNK 251
Cdd:PRK10637  451 LNWFSNH 457
Precorrin_2_C20_MT cd11645
Precorrin-2 C20-methyltransferase, also named CobI or CbiL; Precorrin-2 C20-methyltransferase ...
14-219 8.31e-25

Precorrin-2 C20-methyltransferase, also named CobI or CbiL; Precorrin-2 C20-methyltransferase (also known as S-adenosyl-L-methionine--precorrin-2 methyltransferase) participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. Precorrin-2 C20-methyltransferase catalyzes methylation at the C-20 position of a cyclic tetrapyrrole ring of precorrin-2 using S-adenosylmethionine as a methyl group source to produce precorrin-3A. In the anaerobic pathway, cobalt is inserted into precorrin-2 by CbiK to generate cobalt-precorrin-2, which is the substrate for CbiL, a C20 methyltransferase. In Clostridium difficile, CbiK and CbiL are fused into a bifunctional enzyme. In the aerobic pathway, the precorrin-2 C20-methyltransferase is named CobI. This family includes CbiL and CobI precorrin-2 C20-methyltransferases, both as stand-alone enzymes and when CbiL forms part of a bifunctional enzyme.


Pssm-ID: 381172 [Multi-domain]  Cd Length: 223  Bit Score: 97.96  E-value: 8.31e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  14 VGIGPGHPDLLTIQATQILEQTDVILY-------DCLANQCILEDQRFQAKIEFVEKDMTF---------QKMIDIMENY 77
Cdd:cd11645     1 VGVGPGDPELLTLKAVRILKEADVIFVpvskggeGSAALIIAAALLIPDKEIIPLEFPMTKdreeleeawDEAAEEIAEE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  78 YLEGKKVARLRSGDSMMFNSGGIESKILKERKIPFDVIPGITAAGAASSVFSIPTTELNESDALVhfishdtpENFAQIR 157
Cdd:cd11645    81 LKEGKDVAFLTLGDPSLYSTFSYLLERLRAPGVEVEIIPGITSFSAAAARLGIPLAEGDESLAIL--------PATYDEE 152
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1559336626 158 DLTVLFKYGTTIALYMANQNLTRILNIMKEENVDQNlpVVVVSRVSMPEEtAIYTHLSELLG 219
Cdd:cd11645   153 ELEKALENFDTVVLMKVGRNLEEIKELLEELGLLDK--AVYVERCGMEGE-RIYTDLEELKE 211
PRK07168 PRK07168
uroporphyrin-III C-methyltransferase;
11-242 5.07e-24

uroporphyrin-III C-methyltransferase;


Pssm-ID: 180864 [Multi-domain]  Cd Length: 474  Bit Score: 100.07  E-value: 5.07e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  11 VNIVGIGPGHPDLLTIQATQILEQTDVILYDCLANQCILEDQRFQAKIEFVEKDMTFQKMIDIMENYYL-----EGKKVA 85
Cdd:PRK07168    5 VYLVGAGPGDEGLITKKAIECLKRADIVLYDRLLNPFFLSYTKQTCELMYCGKMPKNHIMRQEMINAHLlqfakEGKIVV 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  86 RLRSGDSMMFNSGGIESKILKERKIPFDVIPGITAAGAASSVFSIPTTELNESDALVHFISHDTPEnfaqirdLTVLFKY 165
Cdd:PRK07168   85 RLKGGDPSIFGRVGEEAETLAAANIPYEIVPGITSSIAASSYAGIPLTHRNYSNSVTLLTGHAKGP-------LTDHGKY 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626 166 GT-----TIALYMANQNLTRILNIMKEENVDQNLPVVVVSRVSMPEETAIYTHLSELLGTLETNQLRSPMVFFIGKHVKI 240
Cdd:PRK07168  158 NSshnsdTIAYYMGIKNLPTICENLRQAGKKEDTPVAVIEWGTTGKQRVVTGTLSTIVSIVKNENISNPSMTIVGDVVSL 237

                  ..
gi 1559336626 241 LN 242
Cdd:PRK07168  238 RN 239
cbiF PRK15473
cobalt-precorrin-4 methyltransferase;
9-236 2.21e-23

cobalt-precorrin-4 methyltransferase;


Pssm-ID: 185370  Cd Length: 257  Bit Score: 95.21  E-value: 2.21e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626   9 HKVNIVGIGPGHPDLLTIQATQILEQTDVILY-DCLANQCILEDQRFQAKIeFVEKDMTFQKMIDIMENYYLEGKKVARL 87
Cdd:PRK15473    8 RCVWFVGAGPGDKELITLKGYRLLQQAQVVIYaGSLINTELLDYCPAQAEC-HDSAELHLEQIIDLMEAGVKAGKTVVRL 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  88 RSGDSMMFNSGGIESKILKERKIPFDVIPGITA-AGAASSV---FSIPttELNESdALVHFISHDTP-------ENFAQI 156
Cdd:PRK15473   87 QTGDVSLYGSIREQGEELTKRGIDFQVVPGVSSfLGAAAELgveYTVP--EVSQS-LIITRMEGRTPvpareqlESFASH 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626 157 RdltvlfkygTTIALYMANQNLTRILNIMKEENVDQNLPVVVVSRVSMPEETAIYTHLSELLGTLETNQLRSPMVFFIGK 236
Cdd:PRK15473  164 Q---------TSMAIFLSVQRIHRVAERLIAGGYPATTPVAVIYKATWPESQTVRGTLADIAEKVRDAGIRKTALILVGN 234
CobF COG2243
Precorrin-2 methylase [Coenzyme transport and metabolism]; Precorrin-2 methylase is part of ...
14-217 4.52e-23

Precorrin-2 methylase [Coenzyme transport and metabolism]; Precorrin-2 methylase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 441844 [Multi-domain]  Cd Length: 229  Bit Score: 93.62  E-value: 4.52e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  14 VGIGPGHPDLLTIQATQILEQTDVILY-------DCLANQcILEDQRFQAKIEFVEKDMT---------FQKMIDIMENY 77
Cdd:COG2243     8 VGVGPGDPELLTLKAVRALREADVIAYpakgagkASLARE-IVAPYLPPARIVELVFPMTtdyealvaaWDEAAARIAEE 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  78 YLEGKKVARLRSGDSMMFNSGGIESKILKERKIPFDVIPGITAAGAASSVFSIPTTELNESdalVHFISHDTPENfaqir 157
Cdd:COG2243    87 LEAGRDVAFLTEGDPSLYSTFMYLLERLRERGFEVEVIPGITSFSAAAAALGIPLAEGDEP---LTVLPGTLLEE----- 158
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626 158 DLTVLFKYGTTIALYMANQNLTRILNIMKEENVDQNlpVVVVSRVSMPEETaIYTHLSEL 217
Cdd:COG2243   159 ELERALDDFDTVVIMKVGRNFPKVREALEEAGLLDR--AWYVERAGMPDER-IVPGLAEV 215
TP_methylase cd09815
S-AdoMet-dependent tetrapyrrole methylases; This superfamily uses S-AdoMet ...
14-235 1.01e-20

S-AdoMet-dependent tetrapyrrole methylases; This superfamily uses S-AdoMet (S-adenosyl-L-methionine or SAM) in the methylation of diverse substrates. Most members catalyze various methylation steps in cobalamin (vitamin B12) biosynthesis. There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. The enzymes involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Most of the enzymes are shared by both pathways and a few enzymes are pathway-specific. Diphthine synthase and ribosomal RNA small subunit methyltransferase I (RsmI) are two superfamily members that are not involved in cobalamin biosynthesis. Diphthine synthase participates in the posttranslational modification of a specific histidine residue in elongation factor 2 (EF-2) of eukaryotes and archaea to diphthamide. RsmI catalyzes the 2-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. Other superfamily members not involved in cobalamin biosynthesis include the N-terminal tetrapyrrole methylase domain of Bacillus subtilis YabN whose specific function is unknown, and Omphalotus olearius omphalotin methyltransferase which catalyzes the automethylation of its own C-terminus; this C terminus is subsequently released and macrocyclized to give Omphalotin A, a potent nematicide.


Pssm-ID: 381167 [Multi-domain]  Cd Length: 219  Bit Score: 87.06  E-value: 1.01e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  14 VGIGPGHPDLLTIQATQILEQTDVILYDCLANQCILEDQRFQAKI--EFVEKDMTFQK--MIDIMENYYLEGKKVARLRS 89
Cdd:cd09815     1 VGVGPGDPDLLTLRALEILRAADVVVAEDKDSKLLSLVLRAILKDgkRIYDLHDPNVEeeMAELLLEEARQGKDVAFLSP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  90 GDSMMFNSGGIESKILKERKIPFDVIPGITAAGAASSVFSIPtteLNESDALVHFISHDTPEnfaQIRDLTVLFKYGTTI 169
Cdd:cd09815    81 GDPGVAGTGAELVERAEREGVEVKVIPGVSAADAAAAALGID---LGESFLFVTASDLLENP---RLLVLKALAKERRHL 154
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1559336626 170 ALYM-ANQNLTRILNIMKEENVDQnLPVVVVSRVSMPEETAIYTHLSELLGtLETNQLRSPMVFFIG 235
Cdd:cd09815   155 VLFLdGHRFLKALERLLKELGEDD-TPVVLVANAGSEGEVIRTGTVKELRA-ERTERGKPLTTILVG 219
Precorrin_3B_C17_MT cd11646
Precorrin-3B C(17)-methyltransferase (also named CobJ or CbiH); Precorrin-3B C(17) ...
11-218 5.11e-19

Precorrin-3B C(17)-methyltransferase (also named CobJ or CbiH); Precorrin-3B C(17)-methyltransferase participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. This model includes CobJ of the aerobic pathway and CbiH of the anaerobic pathway, both as stand-alone enzymes and when CobJ or CbiH form part of bifunctional enzymes, such as in Mycobacterium tuberculosis CobIJ where CobJ fuses with a precorrin-2 C(20)-methyltransferase domain, or Bacillus megaterium CbiH60, where CbiH is fused to a nitrite and sulfite reductase-like domain. In the aerobic pathway, once CobG has generated precorrin-3b, CobJ catalyzes the methylation of precorrin-3b at C-17 to form precorrin-4 (the extruded methylated C-20 fragment is left attached as an acyl group at C-1). In the corresponding anaerobic pathway, CbiH carries out this ring contraction, using cobalt-precorrin-3b as a substrate to generate a tetramethylated delta-lactone.


Pssm-ID: 381173 [Multi-domain]  Cd Length: 238  Bit Score: 82.85  E-value: 5.11e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  11 VNIVGIGPGHPDLLTIQATQILEQTDVIL-YDCLANQC--ILEDQrfqakiEFVEKDMTF-----QKMIDimenYYLEGK 82
Cdd:cd11646     1 LYVVGIGPGSADLMTPRAREALEEADVIVgYKTYLDLIedLLPGK------EVISSGMGEeveraREALE----LALEGK 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  83 KVARLRSGDSMMFNSGGIESKILKERK--IPFDVIPGITAAGAASSVFSIPttelnesdalvhfISHDtpenFAQI---- 156
Cdd:cd11646    71 RVALVSSGDPGIYGMAGLVLELLDERWddIEVEVVPGITAALAAAALLGAP-------------LGHD----FAVIslsd 133
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1559336626 157 ---------RDLTVLFKYGTTIALYmaN-------QNLTRILNIMKEEnVDQNLPVVVVSRVSMPEETAIYTHLSELL 218
Cdd:cd11646   134 lltpwevieKRLRAAAEADFVIALY--NprskkrpWQLEKALEILLEH-RPPDTPVGIVRNAGREGEEVTITTLGELD 208
cobI_cbiL TIGR01467
precorrin-2 C(20)-methyltransferase; This model represents precorrin-2 C(20)-methyltransferase, ...
14-217 1.77e-18

precorrin-2 C(20)-methyltransferase; This model represents precorrin-2 C(20)-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 273642 [Multi-domain]  Cd Length: 230  Bit Score: 81.20  E-value: 1.77e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  14 VGIGPGHPDLLTIQATQILEQTDVILY-------DCLANQCIledQRFQAKIEFVEKDMTFQ--KMIDIMENYYLE---- 80
Cdd:TIGR01467   6 VGVGPGDPELITVKALEALRSADVIAVpaskkgrESLARKIV---EDYLKPNDTRILELVFPmtKDRDELEKAWDEaaea 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  81 -------GKKVARLRSGDSMMFNSGGIESKILKERKIPFDVIPGITAAGAASSVFSIPTTELNESDALVhfishDTPENF 153
Cdd:TIGR01467  83 vaaeleeGRDVAFLTLGDPSLYSTFSYLLQRLQGMGIEVEVVPGITSFAACASAAGLPLVEGDESLAIL-----PATAGE 157
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1559336626 154 AQIRDLTVLFKygtTIALYMANQNLTRILNIMKEENVDQNLpvVVVSRVSMPEEtAIYTHLSEL 217
Cdd:TIGR01467 158 AELEKALAEFD---TVVLMKVGRNLPQIKEALAKLGRLDAA--VVVERATMPDE-KIVDLVREA 215
TP_methylase cd11724
uncharacterized family of the tetrapyrrole methylase superfamily; Members of this superfamily ...
10-235 2.27e-17

uncharacterized family of the tetrapyrrole methylase superfamily; Members of this superfamily use S-AdoMet (S-adenosyl-L-methionine or SAM) in the methylation of diverse substrates. Most members catalyze various methylation steps in cobalamin (vitamin B12) biosynthesis. There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. The enzymes involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Most of the enzymes are shared by both pathways and a few enzymes are pathway-specific. Diphthine synthase and Ribosomal RNA small subunit methyltransferase I (RsmI) are two superfamily members that are not involved in cobalamin biosynthesis. Diphthine synthase participates in the posttranslational modification of a specific histidine residue in elongation factor 2 (EF-2) of eukaryotes and archaea to diphthamide. RsmI catalyzes the 2-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. Other superfamily members not involved in cobalamin biosynthesis include the N-terminal tetrapyrrole methylase domain of Bacillus subtilis YabN whose specific function is unknown, and Omphalotus olearius omphalotin methyltransferase which catalyzes the automethylation of its own C-terminus; this C terminus is subsequently released and macrocyclized to give Omphalotin A, a potent nematicide.


Pssm-ID: 381178 [Multi-domain]  Cd Length: 243  Bit Score: 78.37  E-value: 2.27e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  10 KVNIVGIGPGHPDLLTIQATQILEQTDVILY---------DCLANQCILED-------------QRFQAKIEFVEKDMTF 67
Cdd:cd11724     1 KLYLVGVGPGDPDLITLRALKAIKKADVVFAppdlrkrfaEYLAGKEVLDDphglftyygkkcsPLEEAEKECEELEKQR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  68 QKMIDIMENYYLEGKKVARLRSGDSMMFnsgGIESKILKE-RKIPFDVIPGITAAGAASSVFSIPTTELNESDALVhfIS 146
Cdd:cd11724    81 AEIVQKIREALAQGKNVALLDSGDPTIY---GPWIWYLEEfADLNPEVIPGVSSFNAANAALKRSLTGGGDSRSVI--LT 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626 147 --HDTPENFAQIRDLTvlfKYGTTIALYMANQNLTRILNIMKeENVDQNLPVVVVSRVSMPE-ETAIYTHLSELLGTLET 223
Cdd:cd11724   156 apFALKENEDLLEDLA---ATGDTLVIFMMRLDLDELVEKLK-KHYPPDTPVAIVYHAGYSEkEKVIRGTLDDILEKLGG 231
                         250
                  ....*....|..
gi 1559336626 224 NQLRSPMVFFIG 235
Cdd:cd11724   232 EKEPFLGLIYVG 243
PRK05576 PRK05576
cobalt-factor II C(20)-methyltransferase;
14-218 4.22e-16

cobalt-factor II C(20)-methyltransferase;


Pssm-ID: 235512 [Multi-domain]  Cd Length: 229  Bit Score: 74.95  E-value: 4.22e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  14 VGIGPGHPDLLTIQATQILEQTDVI-------LYDCLANQCILEDQRFQAKIefVEKD--MT---------FQKMIDIME 75
Cdd:PRK05576    7 IGLGPGDPELLTVKAARILEEADVVyapasrkGGGSLALNIVRPYLKEETEI--VELHfpMSkdeeekeavWKENAEEIA 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  76 NYYLEGKKVARLRSGDSMMFNSGGIESKILKERKIPFDVIPGITAAGAASSVFSIPTTELNESDALVHFISHDTPENFAQ 155
Cdd:PRK05576   85 AEAEEGKNVAFITLGDPNLYSTFSHLLEYLKCHDIEVETVPGISSFTAIASRAGVPLAMGDESLAIIPATREALIEQALT 164
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1559336626 156 IRDLTVLFKygttialymANQNLTRILNIMKEENVDqnlpVVVVSRVSMPEETaIYTHLSELL 218
Cdd:PRK05576  165 DFDSVVLMK---------VYKNFALIEELLEEGYLD----ALYVRRAYMEGEQ-ILRRLEEIL 213
CobJ COG1010
Precorrin-3B methylase [Coenzyme transport and metabolism]; Precorrin-3B methylase is part of ...
10-218 2.59e-15

Precorrin-3B methylase [Coenzyme transport and metabolism]; Precorrin-3B methylase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 440634  Cd Length: 250  Bit Score: 72.80  E-value: 2.59e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  10 KVNIVGIGPGHPDLLTIQATQILEQTDVI----LY-----DCLANQCIL------EDQRFQAKIEFVEkdmtfqkmidim 74
Cdd:COG1010     5 KLYVVGLGPGSAELMTPRARAALAEADVVvgygTYldlipPLLPGKEVHasgmreEVERAREALELAA------------ 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  75 enyylEGKKVARLRSGDSMMFNSGGIESKILKERK----IPFDVIPGITAAGAASSVFSIPttelnesdalvhfISHDtp 150
Cdd:COG1010    73 -----EGKTVAVVSSGDPGVYGMAGLVLEVLEEGGawrdVEVEVVPGITAAQAAAARLGAP-------------LGHD-- 132
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626 151 enFAQI-------------RDLTVLFKYGTTIALYmaN-------QNLTRILNIMKEEnVDQNLPVVVVSRVSMPEETAI 210
Cdd:COG1010   133 --FCVIslsdlltpwevieKRLRAAAEADFVIALY--NprsrkrpWQLERALEILLEH-RPPDTPVGIVRNAGRPDESVT 207

                  ....*...
gi 1559336626 211 YTHLSELL 218
Cdd:COG1010   208 VTTLGELD 215
PRK05765 PRK05765
precorrin-3B C17-methyltransferase; Provisional
10-231 9.69e-14

precorrin-3B C17-methyltransferase; Provisional


Pssm-ID: 235597  Cd Length: 246  Bit Score: 68.66  E-value: 9.69e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  10 KVNIVGIGPGHPDLLTIQATQILEQTDVIL-YDCLANqcILED-----QRFQAKI--EFVEKDMTFQKMidimenyyLEG 81
Cdd:PRK05765    3 KLYIVGIGPGSKEQRTIKAQEAIEKSNVIIgYNTYLR--LISDlldgkEVIGARMkeEIFRANTAIEKA--------LEG 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  82 KKVARLRSGDSMMFNSGGIESKILKERKIP--FDVIPGITAAGAASSVFSIPTTE----LNESDALvhfishdTPENfAQ 155
Cdd:PRK05765   73 NIVALVSSGDPQVYGMAGLVFELISRRKLDvdVEVIPGVTAALAAAARLGSPLSLdfvvISLSDLL-------IPRE-EI 144
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1559336626 156 IRDLTVLFKYGTTIALY-MANQNLTR-ILNIMKEENVDQNlPVVVVSRVSMPEETAIYTHLSELLGTLETNQLRSPMV 231
Cdd:PRK05765  145 LHRVTKAAEADFVIVFYnPINENLLIeVMDIVSKHRKPNT-PVGLVKSAYRNNENVVITTLSSWKEHMDEIGMTTTMI 221
cobJ_cbiH TIGR01466
precorrin-3B C17-methyltransferase; This model represents precorrin-3B C17-methyltransferase, ...
13-217 1.71e-13

precorrin-3B C17-methyltransferase; This model represents precorrin-3B C17-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, EC 2.1.1.133). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products. Members of this family may appear as fusion proteins with other enzymes of cobalamin biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 273641 [Multi-domain]  Cd Length: 239  Bit Score: 67.71  E-value: 1.71e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  13 IVGIGPGHPDLLTIQATQILEQTDVIL-YDCLANQciLEDQRFQAKIefVEKDMTfqKMIDIME---NYYLEGKKVARLR 88
Cdd:TIGR01466   3 VVGIGPGAEELMTPEAKEALAEADVIVgYKTYLDL--IEDLIPGKEV--VTSGMR--EEIARAElaiELAAEGRTVALVS 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  89 SGDSMMFNSGGIESKILKERKIPFD--VIPGITAAGAASSVFSIPtteLNESDALVHFISHDTPENFAQIRdLTVLFKYG 166
Cdd:TIGR01466  77 SGDPGIYGMAALVFEALEKKGAEVDieVIPGITAASAAASLLGAP---LGHDFCVISLSDLLTPWPEIEKR-LRAAAEAD 152
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1559336626 167 TTIALYmaN-------QNLTRILNIMKEENVDQNlPVVVVSRVSMPEETAIYTHLSEL 217
Cdd:TIGR01466 153 FVIAIY--NprskrrpEQFRRAMEILLEHRKPDT-PVGIVRNAGREGEEVEITTLAEL 207
Precorrin-6Y-MT cd11644
Precorrin-6Y methyltransferase (also named CbiE); CbiE (precorrin-6Y methyltransferase, also ...
14-219 2.74e-13

Precorrin-6Y methyltransferase (also named CbiE); CbiE (precorrin-6Y methyltransferase, also known as cobalt-precorrin-7 C(5)-methyltransferase, also known as cobalt-precorrin-6Y C(5)-methyltransferase) catalyzes the methylation of C-5 in cobalt-precorrin-7 to form cobalt-precorrin-8. It participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. CbiE functions in the anaerobic pathway, it is a subunit of precorrin-6Y C5,15-methyltransferase, a bifunctional enzyme: cobalt-precorrin-7 C(5)-methyltransferase (CbiE)/cobalt-precorrin-6B C(15)-methyltransferase (decarboxylating) (CbiT), that catalyzes two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. CbiE and CbiT can be found fused (CbiET, also called CobL), or on separate protein chains (CbiE and CbiT). In the aerobic pathway, a single enzyme called CobL catalyzes the methylations at C-5 and C-15, and the decarboxylation of the C-12 acetate side chain of precorrin-6B.


Pssm-ID: 381171 [Multi-domain]  Cd Length: 198  Bit Score: 66.36  E-value: 2.74e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  14 VGIGPGHPDLLTIQATQILEQTDVI-----LYDCLANqciledqrFQAKIEFVEKDmtfqKMIDIMENYYLEGKKVARLR 88
Cdd:cd11644     1 IGIGPGGPEYLTPEAREAIEEADVVigakrLLELFPD--------LGAEKIPLPSE----DIAELLEEIAEAGKRVVVLA 68
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  89 SGDSMMFnsgGIESKILKERKI-PFDVIPGITAAGAASSVFSIPtteLNEsdalVHFIS-HDTPENfaqirDLTVLFKYG 166
Cdd:cd11644    69 SGDPGFY---GIGKTLLRRLGGeEVEVIPGISSVQLAAARLGLP---WED----ARLVSlHGRDLE-----NLRRALRRG 133
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1559336626 167 TTIALYMANQN-LTRILNIMKEENVDqNLPVVVVSRVSMPEETAIYTHLSELLG 219
Cdd:cd11644   134 RKVFVLTDGKNtPAEIARLLLERGLG-DSRVTVGENLGYPDERITEGTAEELAE 186
CbiE TIGR02467
precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; This model recognizes ...
13-207 1.11e-09

precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; This model recognizes the CbiE methylase which is responsible, in part (along with CbiT), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiT subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.


Pssm-ID: 274146 [Multi-domain]  Cd Length: 204  Bit Score: 56.55  E-value: 1.11e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  13 IVGIGPGHPDLLTIQATQILEQTDVIlydcLANQCILEDqrFQAKIEFVEKDMTFQKMIDIMENYYLE---GKKVARLRS 89
Cdd:TIGR02467   1 VVGIGPGGPELLTPAAIEAIRKADLV----VGGERHLEL--LAELIGEKREIILTYKDLDELLEFIAAtrkEKRVVVLAS 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  90 GDSMMFNSGGIESKILKERKIpfDVIPGITAAGAASSVFSIPTTelnesDALvhFIS-HDTPENF---AQIRDLTVLfky 165
Cdd:TIGR02467  75 GDPLFYGIGRTLAERLGKERL--EIIPGISSVQYAFARLGLPWQ-----DAV--VISlHGRELDElllALLRGHRKV--- 142
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1559336626 166 gttIALYMANQNLTRILNIMKEENVDQNLPVVVVSRVSMPEE 207
Cdd:TIGR02467 143 ---AVLTDPRNGPAEIARELIELGIGGSYELTVGENLGYEDE 181
PRK05787 PRK05787
cobalt-precorrin-7 (C(5))-methyltransferase;
10-207 1.38e-09

cobalt-precorrin-7 (C(5))-methyltransferase;


Pssm-ID: 235609 [Multi-domain]  Cd Length: 210  Bit Score: 56.42  E-value: 1.38e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  10 KVNIVGIGPGHPDLLTIQATQILEQTDVILydclanqciledqRFQAKIEFVEK---------DMTFQKMIDIMENYYLe 80
Cdd:PRK05787    1 MIYIVGIGPGDPEYLTLKALEAIRKADVVV-------------GSKRVLELFPElidgeafvlTAGLRDLLEWLELAAK- 66
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  81 GKKVARLRSGDSMMFnsgGIESKILKER--KIPFDVIPGITAAGAASSVFSIPTTELNesdalvhFIS-HDTPENFAQIR 157
Cdd:PRK05787   67 GKNVVVLSTGDPLFS---GLGKLLKVRRavAEDVEVIPGISSVQYAAARLGIDMNDVV-------FTTsHGRGPNFEELE 136
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1559336626 158 DLtvLFKYGTTIALYMANQNLTRILNIMKeENVDQNLPVVVVSRVSMPEE 207
Cdd:PRK05787  137 DL--LKNGRKVIMLPDPRFGPKEIAAELL-ERGKLERRIVVGENLSYPDE 183
CobL COG2241
Precorrin-6B methylase 1 [Coenzyme transport and metabolism]; Precorrin-6B methylase 1 is part ...
9-120 4.36e-09

Precorrin-6B methylase 1 [Coenzyme transport and metabolism]; Precorrin-6B methylase 1 is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 441842 [Multi-domain]  Cd Length: 207  Bit Score: 54.77  E-value: 4.36e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626   9 HKVNIVGIGPGHPDLLTIQATQILEQTDVI--------LYDCLANQCILEDQRFQAKIEFVEKdmtfqkmidimenyYLE 80
Cdd:COG2241     2 PWLTVVGIGPGGPDGLTPAAREAIAEADVVvggkrhleLFPDLGAERIVWPSPLSELLEELLA--------------LLR 67
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1559336626  81 GKKVARLRSGDSMMFnsgGIESKILkeRKIP---FDVIPGITA 120
Cdd:COG2241    68 GRRVVVLASGDPLFY---GIGATLA--RHLPaeeVRVIPGISS 105
PRK05948 PRK05948
precorrin-2 C(20)-methyltransferase;
14-217 4.40e-09

precorrin-2 C(20)-methyltransferase;


Pssm-ID: 180320  Cd Length: 238  Bit Score: 55.42  E-value: 4.40e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  14 VGIGPGHPDLLTIQATQILEQTDVILYDC-------LANQCIL-----EDQRFQAKIEFVEK----DMTFQKMIDIMENY 77
Cdd:PRK05948    9 ISVGPGDPELITLKGLRLLQSAPVVAFPAglagqpgLAEQIIApwlspQQIKLPLYFPYVQDeeqlEQAWQAAADQVWHY 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  78 YLEGKKVARLRSGDSMMFNSGGIESKILKER--KIPFDVIPGITAAGAASSVFSIPTTELNESDALVHFISHdtPENFAQ 155
Cdd:PRK05948   89 LEQGEDVAFACEGDVSFYSTFTYLAQTLQELypQVAIQTIPGVCSPLAAAAALGIPLTLGSQRLAILPALYH--LEELEQ 166
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1559336626 156 I---RDLTVLFK----YGttialymanqnltRILNIMKEENVDQNlpVVVVSRVSMPEETaIYTHLSEL 217
Cdd:PRK05948  167 AltwADVVVLMKvssvYP-------------QVWQWLKARNLLEQ--ASLVERATTPEQV-IYRNLEDY 219
cbiH PRK15478
precorrin-3B C(17)-methyltransferase;
13-131 6.16e-07

precorrin-3B C(17)-methyltransferase;


Pssm-ID: 185375 [Multi-domain]  Cd Length: 241  Bit Score: 49.11  E-value: 6.16e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  13 IVGIGPGHPDLLTIQATQILEQTDVIL----YDCLANQCILEDQRFQAKI-EFVEKdmtFQKMIDIMEnyylEGKKVARL 87
Cdd:PRK15478    4 VIGIGPGSQAMMTMEAIEALQAAEIVVgyktYTHLVKAFTGDKQVIKTGMcKEIER---CQAAIELAQ----AGHNVALI 76
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1559336626  88 RSGDSMMFNSGGIESKILKERKIPFDV--IPGITAAGAASSVFSIP 131
Cdd:PRK15478   77 SSGDAGIYGMAGLVLELVSKQKLDVEVrlIPGMTASIAAASLLGAP 122
PRK05990 PRK05990
precorrin-2 C(20)-methyltransferase; Reviewed
14-138 2.43e-05

precorrin-2 C(20)-methyltransferase; Reviewed


Pssm-ID: 180341  Cd Length: 241  Bit Score: 44.21  E-value: 2.43e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559336626  14 VGIGPGHPDLLTIQATQILEQTDVILYDCLANQ-----CILEDQRFQAKIEF-------VEKD---MTFQKMIDimeNYY 78
Cdd:PRK05990    8 LGVGPGDPELLTLKALRLLQAAPVVAYFVAKGKkgnafGIVEAHLSPGQTLLplvypvtTEILpppLCYETVIA---DFY 84
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1559336626  79 LE-----------GKKVARLRSGDSMMFNSGGIESKILKERkIPFDVIPGITAAGAASSVFSIPTTELNES 138
Cdd:PRK05990   85 DTsaeavaahldaGRDVAVICEGDPFFYGSYMYLHDRLAPR-YETEVIPGVCSMLGCWSVLGAPLVYRNQS 154
Precorrin-6A-synthase cd11643
Precorrin-6A synthase (also named CobF); Precorrin-6A synthase participates in the pathway ...
13-39 2.73e-05

Precorrin-6A synthase (also named CobF); Precorrin-6A synthase participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. This model represents CobF, the precorrin-6A synthase, an enzyme specific to the aerobic pathway. After precorrin-4 is methylated at C-11 by CobM to produce precorrin-5, CobF catalyzes the removal of the extruded acyl group in the subsequent step, and the addition of a methyl group at C-1. The product of this reaction is precorrin-6A, which gets reduced by an NADH-dependent reductase to yield precorrin-6B. This family includes enzymes in GC-rich Gram-positive bacteria, alpha proteobacteria and Pseudomonas-related species.


Pssm-ID: 381170  Cd Length: 244  Bit Score: 44.02  E-value: 2.73e-05
                          10        20
                  ....*....|....*....|....*..
gi 1559336626  13 IVGIGPGHPDLLTIQATQILEQTDVIL 39
Cdd:cd11643     1 LIGIGPGDPDHLTLQAIEALNRVDVFF 27
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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