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Conserved domains on  [gi|1563379436|ref|WP_128848936|]
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MULTISPECIES: DUF6400 family protein [Streptomyces]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6400 pfam19938
Family of unknown function (DUF6400); This entry represents a member of a biosynthetic gene ...
 12-80 3.53e-28

Family of unknown function (DUF6400); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000144) is described by MIBiG as an example of the following biosynthetic class, polyketide, in particular the salinomycin biosynthetic gene cluster from Streptomyces albus. This family appears to be predominantly found in Actinobacteria.


:

Pssm-ID: 437770  Cd Length: 69  Bit Score: 96.17  E-value: 3.53e-28
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1563379436 12 FTIDLTFEEARRRAAVVAALGPDWDPMAALRGEDEAYALLYSGLDAEQQRTYDRLVAAGVLPGEDQGRA 80
Cdd:pfam19938  1 FAVDLTAHEARRRAEVLAALGPDWDPVAVLRGEEEAYDLLYSGLDAEQQRVYDELVAAGVLPRRGGGRA 69
 
Name Accession Description Interval E-value
DUF6400 pfam19938
Family of unknown function (DUF6400); This entry represents a member of a biosynthetic gene ...
 12-80 3.53e-28

Family of unknown function (DUF6400); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000144) is described by MIBiG as an example of the following biosynthetic class, polyketide, in particular the salinomycin biosynthetic gene cluster from Streptomyces albus. This family appears to be predominantly found in Actinobacteria.


Pssm-ID: 437770  Cd Length: 69  Bit Score: 96.17  E-value: 3.53e-28
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1563379436 12 FTIDLTFEEARRRAAVVAALGPDWDPMAALRGEDEAYALLYSGLDAEQQRTYDRLVAAGVLPGEDQGRA 80
Cdd:pfam19938  1 FAVDLTAHEARRRAEVLAALGPDWDPVAVLRGEEEAYDLLYSGLDAEQQRVYDELVAAGVLPRRGGGRA 69
 
Name Accession Description Interval E-value
DUF6400 pfam19938
Family of unknown function (DUF6400); This entry represents a member of a biosynthetic gene ...
 12-80 3.53e-28

Family of unknown function (DUF6400); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000144) is described by MIBiG as an example of the following biosynthetic class, polyketide, in particular the salinomycin biosynthetic gene cluster from Streptomyces albus. This family appears to be predominantly found in Actinobacteria.


Pssm-ID: 437770  Cd Length: 69  Bit Score: 96.17  E-value: 3.53e-28
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1563379436 12 FTIDLTFEEARRRAAVVAALGPDWDPMAALRGEDEAYALLYSGLDAEQQRTYDRLVAAGVLPGEDQGRA 80
Cdd:pfam19938  1 FAVDLTAHEARRRAEVLAALGPDWDPVAVLRGEEEAYDLLYSGLDAEQQRVYDELVAAGVLPRRGGGRA 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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