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Conserved domains on  [gi|1575505718|ref|WP_129944329|]
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MULTISPECIES: IS3 family transposase, partial [Gammaproteobacteria]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tra5 super family cl34487
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
1-26 2.54e-05

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


The actual alignment was detected with superfamily member COG2801:

Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 37.44  E-value: 2.54e-05
                          10        20
                  ....*....|....*....|....*.
gi 1575505718   1 YWNQKRIKLSLGGLSPVEYRTEYQKA 26
Cdd:COG2801   283 FYNHERPHSSLGYLTPAEYEKQLAAA 308
 
Name Accession Description Interval E-value
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
1-26 2.54e-05

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 37.44  E-value: 2.54e-05
                          10        20
                  ....*....|....*....|....*.
gi 1575505718   1 YWNQKRIKLSLGGLSPVEYRTEYQKA 26
Cdd:COG2801   283 FYNHERPHSSLGYLTPAEYEKQLAAA 308
transpos_IS3 NF033516
IS3 family transposase;
1-20 1.18e-04

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 35.62  E-value: 1.18e-04
                          10        20
                  ....*....|....*....|
gi 1575505718   1 YWNQKRIKLSLGGLSPVEYR 20
Cdd:NF033516  350 FYNHERPHSSLGYLTPAEFE 369
 
Name Accession Description Interval E-value
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
1-26 2.54e-05

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 37.44  E-value: 2.54e-05
                          10        20
                  ....*....|....*....|....*.
gi 1575505718   1 YWNQKRIKLSLGGLSPVEYRTEYQKA 26
Cdd:COG2801   283 FYNHERPHSSLGYLTPAEYEKQLAAA 308
transpos_IS3 NF033516
IS3 family transposase;
1-20 1.18e-04

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 35.62  E-value: 1.18e-04
                          10        20
                  ....*....|....*....|
gi 1575505718   1 YWNQKRIKLSLGGLSPVEYR 20
Cdd:NF033516  350 FYNHERPHSSLGYLTPAEFE 369
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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