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Conserved domains on  [gi|1583048531|ref|WP_130625105|]
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MULTISPECIES: IS3 family transposase, partial [Klebsiella]

Protein Classification

integrase core domain-containing protein( domain architecture ID 367058)

integrase core domain-containing protein may function in DNA integration or recombination

CATH:  3.30.420.10
EC:  3.1.26.-
Gene Ontology:  GO:0003677|GO:0046872|GO:0015074|GO:0005524|GO:0032196|GO:0006310|GO:0016893
PubMed:  11774877|28059770|7801124
SCOP:  4000539

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rve_3 super family cl22978
Integrase core domain;
1-22 2.78e-04

Integrase core domain;


The actual alignment was detected with superfamily member pfam13333:

Pssm-ID: 451473 [Multi-domain]  Cd Length: 52  Bit Score: 32.62  E-value: 2.78e-04
                         10        20
                 ....*....|....*....|..
gi 1583048531  1 NNERislkLKGLSPVEYRTQAL 22
Cdd:pfam13333 35 NNKR----LKGLSPVQYRNQSL 52
 
Name Accession Description Interval E-value
rve_2 pfam13333
Integrase core domain;
1-22 2.78e-04

Integrase core domain;


Pssm-ID: 372570 [Multi-domain]  Cd Length: 52  Bit Score: 32.62  E-value: 2.78e-04
                         10        20
                 ....*....|....*....|..
gi 1583048531  1 NNERislkLKGLSPVEYRTQAL 22
Cdd:pfam13333 35 NNKR----LKGLSPVQYRNQSL 52
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
1-25 6.15e-04

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 33.59  E-value: 6.15e-04
                          10        20
                  ....*....|....*....|....*
gi 1583048531   1 NNERISLKLKGLSPVEYRTQALRAA 25
Cdd:COG2801   285 NHERPHSSLGYLTPAEYEKQLAAAA 309
 
Name Accession Description Interval E-value
rve_2 pfam13333
Integrase core domain;
1-22 2.78e-04

Integrase core domain;


Pssm-ID: 372570 [Multi-domain]  Cd Length: 52  Bit Score: 32.62  E-value: 2.78e-04
                         10        20
                 ....*....|....*....|..
gi 1583048531  1 NNERislkLKGLSPVEYRTQAL 22
Cdd:pfam13333 35 NNKR----LKGLSPVQYRNQSL 52
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
1-25 6.15e-04

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 33.59  E-value: 6.15e-04
                          10        20
                  ....*....|....*....|....*
gi 1583048531   1 NNERISLKLKGLSPVEYRTQALRAA 25
Cdd:COG2801   285 NHERPHSSLGYLTPAEYEKQLAAAA 309
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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