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Conserved domains on  [gi|1583902580|ref|WP_130716993|]
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MULTISPECIES: iron ABC transporter permease [Rhizobium]

Protein Classification

FecCD family ABC transporter permease( domain architecture ID 10001816)

FecCD family ABC transporter permease such as iron ABC transporter permease, which is the transmembrane subunit (TM) found in a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter involved in the import of iron and iron-containing compounds

CATH:  1.10.3470.10
Gene Ontology:  GO:0140359|GO:0042626
PubMed:  25750732|24638992
SCOP:  4002900
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 32-343 7.06e-102

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440374  Cd Length: 306  Bit Score: 301.99  E-value: 7.06e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580  32 AVSIGEIAIPVATTAEAVsnrlfgTNFEISRIHQGIVWDYRLSRALVAASAGASLSLSGAILQALLRNPLAEPYVLGISA 111
Cdd:COG0609     1 SLSLGAVPISLSDVLRAL------LGPDGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSS 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 112 GASTGAVCVMILGFGYGILGLSSGAFIGAVIAFLLVGFLATGAGG-SGERIILCGVAGSQLFNALTSYIVTTsANAEQAR 190
Cdd:COG0609    75 GAALGAVLAIVLGGGLSALGLPLAAFLGALLAALLVYLLARRGGGlSPLRLVLAGVAVSALFSALTSLLLLL-ADPEQLR 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 191 GILFWLLGSLSGVRWPDVYLSVPIALAGFIICMAHVRALDAFAFGTDAAASLGIAVRRVQIVLFGMTAAMTASVVSMVGS 270
Cdd:COG0609   154 SIVFWLMGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGP 233

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1583902580 271 IGFVGLVIPHAARFLVGPGHGRLLPATALGGAIYMVGADIVSRVIIPQQILPIGVVTALFGAPAFAIILYRVR 343
Cdd:COG0609   234 IGFVGLVVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 32-343 7.06e-102

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 301.99  E-value: 7.06e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580  32 AVSIGEIAIPVATTAEAVsnrlfgTNFEISRIHQGIVWDYRLSRALVAASAGASLSLSGAILQALLRNPLAEPYVLGISA 111
Cdd:COG0609     1 SLSLGAVPISLSDVLRAL------LGPDGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSS 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 112 GASTGAVCVMILGFGYGILGLSSGAFIGAVIAFLLVGFLATGAGG-SGERIILCGVAGSQLFNALTSYIVTTsANAEQAR 190
Cdd:COG0609    75 GAALGAVLAIVLGGGLSALGLPLAAFLGALLAALLVYLLARRGGGlSPLRLVLAGVAVSALFSALTSLLLLL-ADPEQLR 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 191 GILFWLLGSLSGVRWPDVYLSVPIALAGFIICMAHVRALDAFAFGTDAAASLGIAVRRVQIVLFGMTAAMTASVVSMVGS 270
Cdd:COG0609   154 SIVFWLMGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGP 233

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1583902580 271 IGFVGLVIPHAARFLVGPGHGRLLPATALGGAIYMVGADIVSRVIIPQQILPIGVVTALFGAPAFAIILYRVR 343
Cdd:COG0609   234 IGFVGLVVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 31-341 3.87e-74

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 231.65  E-value: 3.87e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580  31 LAVSIGEIAIPVATTAEAVSNrlfgtnfEISRIHQGIVWDYRLSRALVAASAGASLSLSGAILQALLRNPLAEPYVLGIS 110
Cdd:pfam01032   8 LSLFIGAVKISPSDVFSALLG-------GDDSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGIS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 111 AGASTGAVCVMILGFGYGILGLSSGAFIGAVIAFLLVGFLATGAGG-SGERIILCGVAGSQLFNALTSYIVTTsANAEQA 189
Cdd:pfam01032  81 SGAALGAVLAILLGGSLSLFALPLAAFIGALLAALLVYFLSRGRGGaSPLRLILAGIAVSALLSALTSLLLLL-LNPEAL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 190 RGILFWLLGSLSGVRWPDVYLSVPIALAGFIICMAHVRALDAFAFGTDAAASLGIAVRRVQIVLFGMTAAMTASVVSMVG 269
Cdd:pfam01032 160 QSILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVG 239

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1583902580 270 SIGFVGLVIPHAARFLVGPGHGRLLPATALGGAIYMVGADIVSRVIIPQQILPIGVVTALFGAPAFAIILYR 341
Cdd:pfam01032 240 PIGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 32-346 1.91e-68

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 217.42  E-value: 1.91e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580  32 AVSIGEIAIPVA----TTAEAVSNRLFGTNFEISRIHQGIVWDYRLSRALVAASAGASLSLSGAILQALLRNPLAEPYVL 107
Cdd:TIGR03869   9 AVTIGPADISVGevwrSVAAHLGRGEGFPGVALSRLQDAIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLL 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 108 GISAGASTGAVCVMILGFGygiLGLSSGAFIGAVIAFLL-VGFLATGAGGSGERIILCGVAGSQLFNALTSYIVTTSANA 186
Cdd:TIGR03869  89 GLSSGASLGAVAVLVLGVA---VLLPVAAFAGALLALAAtLGLARTLGTLTPTRTILAGLAVSQLCAAVTSFVIFWSATG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 187 EQARGILFWLLGSLSGVRWPDVYLSVPIALAGFIICMAHVRALDAFAFGTDAAASLGIAVRRVQIVLFGMTAAMTASVVS 266
Cdd:TIGR03869 166 DSYREILSWLMGSLAGATWGSVAIAGGALLVVGLVLLASGRVLDAFAFGDSSAAALGVDVERTRWLLLTLVALLTGALVS 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 267 MVGSIGFVGLVIPHAARFLVGPGHGRLLPATALGGAIYMVGADIVSRVIIPQQILPIGVVTALFGAPAFAIILYRVRGNA 346
Cdd:TIGR03869 246 VSGAIGFVGLILPHAVRLLTGPRHRLLLPVSALAGAVFLVWADTLARTVFAPRELPVGIITALIGAPVFAVLLYRSRSGA 325
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
68-343 2.12e-57

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 196.98  E-value: 2.12e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580  68 VWDYRLSRALVAASAGASLSLSGAILQALLRNPLAEPYVLGISAGASTGAVCVMILGFGYGILGLSSGAFIGAVIAFLLV 147
Cdd:PRK10577  393 LLPLRLPRLLAALLAGAMLAVAGTLLQRLTRNPLASPEVLGISSGAGLGVVLALFLVPGAGFGWLLAAALLGALAALALI 472

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 148 GFLATGAGGSGERIILCGVAGSQLFNALTSYIVTTSAnaEQARGILFWLLGSLSGVRWPDVYLSVPIALAGFIICMAHVR 227
Cdd:PRK10577  473 LLLARRGGFAPERLLLTGIALSALFTALIQLLLASGD--PRAAQLLTWLSGSTYGVTWAQALPLLIVAVLLLALALLLRR 550

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 228 ALDAFAFGTDAAASLGIAVRRVQIVLFGMTAAMTASVVSMVGSIGFVGLVIPHAARFLVGPGHGRLLPATALGGAIYMVG 307
Cdd:PRK10577  551 WLDLLPLGDDTARALGLPVTRARLALLLLAALLTAAATATVGPLSFVGLMAPHLARMLGGRRARPQLVLAALLGALLMVL 630

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1583902580 308 ADIVSRVIIPQQILPIGVVTALFGAPAFAIILYRVR 343
Cdd:PRK10577  631 ADWLGRTLLFPYQIPAGLLAALIGAPYFLWLLRRSR 666
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 77-339 9.19e-47

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 159.26  E-value: 9.19e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580  77 LVAASAGASLSLSGAILQALLRNPLAEPYVLGISAGASTGAVCVMILGFGYGILGLSSGAFIGAVIAFLLVGFLATGAGG 156
Cdd:cd06550     2 LAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAGALAIALLVLLLASRGGL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 157 SGERIILCGVAGSQLFNALTSYIVTTSANAEQArgILFWLLGSLSGVRWPDVYLSVPIALAGFIICMAHVRALDAFAFGT 236
Cdd:cd06550    82 SPSKLILIGIVLSAFFSAGVILISLLSDDSLQD--LNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFDE 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 237 DAAASLGIAVRRVQIVLFGMTAAMTASVVSMVGSIGFVGLVIPHAARFLVGPGHGRLLPATALGGAIYMVGADIVSRVII 316
Cdd:cd06550   160 DLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRTLL 239

                         250       260
                  ....*....|....*....|...
gi 1583902580 317 PQQiLPIGVVTALFGAPAFAIIL 339
Cdd:cd06550   240 PSE-LPVGPVTALLGAPYFLYLL 261
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 32-343 7.06e-102

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 301.99  E-value: 7.06e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580  32 AVSIGEIAIPVATTAEAVsnrlfgTNFEISRIHQGIVWDYRLSRALVAASAGASLSLSGAILQALLRNPLAEPYVLGISA 111
Cdd:COG0609     1 SLSLGAVPISLSDVLRAL------LGPDGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSS 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 112 GASTGAVCVMILGFGYGILGLSSGAFIGAVIAFLLVGFLATGAGG-SGERIILCGVAGSQLFNALTSYIVTTsANAEQAR 190
Cdd:COG0609    75 GAALGAVLAIVLGGGLSALGLPLAAFLGALLAALLVYLLARRGGGlSPLRLVLAGVAVSALFSALTSLLLLL-ADPEQLR 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 191 GILFWLLGSLSGVRWPDVYLSVPIALAGFIICMAHVRALDAFAFGTDAAASLGIAVRRVQIVLFGMTAAMTASVVSMVGS 270
Cdd:COG0609   154 SIVFWLMGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGP 233

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1583902580 271 IGFVGLVIPHAARFLVGPGHGRLLPATALGGAIYMVGADIVSRVIIPQQILPIGVVTALFGAPAFAIILYRVR 343
Cdd:COG0609   234 IGFVGLVVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 31-341 3.87e-74

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 231.65  E-value: 3.87e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580  31 LAVSIGEIAIPVATTAEAVSNrlfgtnfEISRIHQGIVWDYRLSRALVAASAGASLSLSGAILQALLRNPLAEPYVLGIS 110
Cdd:pfam01032   8 LSLFIGAVKISPSDVFSALLG-------GDDSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGIS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 111 AGASTGAVCVMILGFGYGILGLSSGAFIGAVIAFLLVGFLATGAGG-SGERIILCGVAGSQLFNALTSYIVTTsANAEQA 189
Cdd:pfam01032  81 SGAALGAVLAILLGGSLSLFALPLAAFIGALLAALLVYFLSRGRGGaSPLRLILAGIAVSALLSALTSLLLLL-LNPEAL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 190 RGILFWLLGSLSGVRWPDVYLSVPIALAGFIICMAHVRALDAFAFGTDAAASLGIAVRRVQIVLFGMTAAMTASVVSMVG 269
Cdd:pfam01032 160 QSILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVG 239

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1583902580 270 SIGFVGLVIPHAARFLVGPGHGRLLPATALGGAIYMVGADIVSRVIIPQQILPIGVVTALFGAPAFAIILYR 341
Cdd:pfam01032 240 PIGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 32-346 1.91e-68

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 217.42  E-value: 1.91e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580  32 AVSIGEIAIPVA----TTAEAVSNRLFGTNFEISRIHQGIVWDYRLSRALVAASAGASLSLSGAILQALLRNPLAEPYVL 107
Cdd:TIGR03869   9 AVTIGPADISVGevwrSVAAHLGRGEGFPGVALSRLQDAIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLL 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 108 GISAGASTGAVCVMILGFGygiLGLSSGAFIGAVIAFLL-VGFLATGAGGSGERIILCGVAGSQLFNALTSYIVTTSANA 186
Cdd:TIGR03869  89 GLSSGASLGAVAVLVLGVA---VLLPVAAFAGALLALAAtLGLARTLGTLTPTRTILAGLAVSQLCAAVTSFVIFWSATG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 187 EQARGILFWLLGSLSGVRWPDVYLSVPIALAGFIICMAHVRALDAFAFGTDAAASLGIAVRRVQIVLFGMTAAMTASVVS 266
Cdd:TIGR03869 166 DSYREILSWLMGSLAGATWGSVAIAGGALLVVGLVLLASGRVLDAFAFGDSSAAALGVDVERTRWLLLTLVALLTGALVS 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 267 MVGSIGFVGLVIPHAARFLVGPGHGRLLPATALGGAIYMVGADIVSRVIIPQQILPIGVVTALFGAPAFAIILYRVRGNA 346
Cdd:TIGR03869 246 VSGAIGFVGLILPHAVRLLTGPRHRLLLPVSALAGAVFLVWADTLARTVFAPRELPVGIITALIGAPVFAVLLYRSRSGA 325
BtuC COG4139
ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and ...
 65-343 6.87e-63

ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and metabolism];


Pssm-ID: 443314  Cd Length: 327  Bit Score: 203.16  E-value: 6.87e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580  65 QGIVWDYRLSRALVAASAGASLSLSGAILQALLRNPLAEPYVLGISAGASTGAVCVMILGFGY-GILGLSSGAFIGAVIA 143
Cdd:COG4139    48 QLFVWQLRLPRTLAAVLVGASLAVSGAVMQALFENPLAEPGLLGISNGAGVGLVLVVLLGGGLlPPWLLSLAAIAGALLV 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 144 FLLVGFLAtGAGGSGERIILCGVAGSQLFNALTSYIVTTSaNAEQARGILFWLLGSLSGVRWPDVYLSVPIALAGFIICM 223
Cdd:COG4139   128 TLLLLAFA-RRRLSNARLLLIGVALGIICSAIMTWAVYFS-SSLDLRQLMYWMMGSFGGVDWRQLWLLLALLPVLLWLCL 205

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 224 AHvRALDAFAFGTDAAASLGIAVRRVQIVLFGMTAAMTASVVSMVGSIGFVGLVIPHAARFLVGPGHGRLLPATALGGAI 303
Cdd:COG4139   206 QG-KPLNLLLLGENQARQLGLSVHRWRNLLVLATGLLVGVSVALAGPIGFVGLVVPHLLRLLGTTDHRFLLPACALAGAA 284

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1583902580 304 YMVGADIVSRVIIPQQILPIGVVTALFGAPAFAIILYRVR 343
Cdd:COG4139   285 LLLLADIIARLALSSAELPIGVVTATLGAPVFIWLLLRRR 324
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
68-343 2.12e-57

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 196.98  E-value: 2.12e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580  68 VWDYRLSRALVAASAGASLSLSGAILQALLRNPLAEPYVLGISAGASTGAVCVMILGFGYGILGLSSGAFIGAVIAFLLV 147
Cdd:PRK10577  393 LLPLRLPRLLAALLAGAMLAVAGTLLQRLTRNPLASPEVLGISSGAGLGVVLALFLVPGAGFGWLLAAALLGALAALALI 472

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 148 GFLATGAGGSGERIILCGVAGSQLFNALTSYIVTTSAnaEQARGILFWLLGSLSGVRWPDVYLSVPIALAGFIICMAHVR 227
Cdd:PRK10577  473 LLLARRGGFAPERLLLTGIALSALFTALIQLLLASGD--PRAAQLLTWLSGSTYGVTWAQALPLLIVAVLLLALALLLRR 550

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 228 ALDAFAFGTDAAASLGIAVRRVQIVLFGMTAAMTASVVSMVGSIGFVGLVIPHAARFLVGPGHGRLLPATALGGAIYMVG 307
Cdd:PRK10577  551 WLDLLPLGDDTARALGLPVTRARLALLLLAALLTAAATATVGPLSFVGLMAPHLARMLGGRRARPQLVLAALLGALLMVL 630

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1583902580 308 ADIVSRVIIPQQILPIGVVTALFGAPAFAIILYRVR 343
Cdd:PRK10577  631 ADWLGRTLLFPYQIPAGLLAALIGAPYFLWLLRRSR 666
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
 65-343 1.97e-54

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 181.31  E-value: 1.97e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580  65 QGIVWDYRLSRALVAASAGASLSLSGAILQALLRNPLAEPYVLGISAGASTGAVCVMILGFG-YGILGLSSGAFIGAVIA 143
Cdd:PRK03784   51 ELFVWQLRLPRTLAVLLVGAALAVSGAVMQALFENPLAEPGLLGVSNGAGVALVAAVLLGQGlLPPWALSLCAIAGALLI 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 144 FLLVGFLATGAGGSGERIILCGVAGSQLFNALTSYIVTTSANAEqARGILFWLLGSLSGVRWPDVYLSVPIALAGFIICM 223
Cdd:PRK03784  131 TLILLRFARRHRLSTSRLLLAGVALGIICSALMTWAVYFSTSLD-LRQLMYWMMGGFGGVDWRQSWLMLALLPVLIWLCC 209

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 224 AHvRALDAFAFGTDAAASLGIAVRRVQIVLFGMTAAMTASVVSMVGSIGFVGLVIPHAARFLVGPGHGRLLPATALGGAI 303
Cdd:PRK03784  210 QG-RPLNMLALGEISARQLGLPLWFWRNLLVLATGWLVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLLPGCALAGAS 288

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1583902580 304 YMVGADIVSRVIIPQQILPIGVVTALFGAPAFAIILYRVR 343
Cdd:PRK03784  289 LLLLADIVARLALASAELPIGVVTATLGAPVFIWLLLRSH 328
btuC PRK09535
cobalamin ABC transporter permease BtuC;
58-341 3.56e-54

cobalamin ABC transporter permease BtuC;


Pssm-ID: 236553  Cd Length: 366  Bit Score: 181.87  E-value: 3.56e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580  58 FEISRIHQGIVWDYRLSRALVAASAGASLSLSGAILQALLRNPLAEPYVLGISAGASTGAVCVMILGFGYgILGLSSGAF 137
Cdd:PRK09535   81 FAVPETAQTIVLQIRLPRILLAATVGFALAAAGTVMQGFFRNPMADPSIIGVSSGAAVGAVAAIVLPLAV-PFGLQAAAF 159

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 138 IGAVIAFLLVGFLATGAGGSG-ERIILCGVAGSQLFNALTSYIVTTSAnaEQARGILFWLLGSLSGVRWPDVYLSVPIAL 216
Cdd:PRK09535  160 AGALVAAFGVYAIATENGRTPvATLLLAGVAVQTFLGAVISYLLLHSG--ESLRRAVYWLMGHLHGSTWSDVEVALPVVV 237

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 217 AGFIICMAHVRALDAFAFGTDAAASLGIAVRRVQIVLFGMTAAMTASVVSMVGSIGFVGLVIPHAARFLVGPGHGRLLPA 296
Cdd:PRK09535  238 VGFVVLLAYARDLNVLLLGEEDAHTLGIEVERTKRLLLALASVVTAAAVAVAGVIGFVGLIVPHVMRLLVGPDHRILLPT 317

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1583902580 297 TALGGAIYMVGADIVSRVIIPQqiLPIGVVTALFGAPAFAIILYR 341
Cdd:PRK09535  318 SALAGASFLVATDTVARSGPAE--VPVGIVTAALGAPFFLYLLRT 360
fecD PRK09777
Fe(3+) dicitrate ABC transporter permease subunit FecD;
56-343 3.22e-52

Fe(3+) dicitrate ABC transporter permease subunit FecD;


Pssm-ID: 182071  Cd Length: 318  Bit Score: 175.23  E-value: 3.22e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580  56 TNFEISRIHQGIVWDYRLSRALVAASAGASLSLSGAILQALLRNPLAEPYVLGISAGASTGAVCVMILGFGYGILGLSSG 135
Cdd:PRK09777   35 TDWQAGDEHYYVLMEYRLPRLLLALFVGAALAVSGVLVQGIVRNPLASPDILGVNHAASLASVGALLLFPSLPVMWLPLL 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 136 AFIGAVIAFLLVGFLAtgAGGSGERIILCGVAGSQLFNALTSYIVTTsaNAEQARGILFWLLGSLSGVRWPDVYLSVPIA 215
Cdd:PRK09777  115 AFIGGMAGLILLKMLA--GTHQPMKLALTGVALSALWASLTDYLMLS--RPQDINNALLWLTGSLWGRDWSFVKVALPWL 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 216 LAGFIICMAHVRALDAFAFGTDAAASLGIAVRRVQIVLFGMTAAMTASVVSMVGSIGFVGLVIPHAARFLVGPGHGRLLP 295
Cdd:PRK09777  191 ILLLPLSLSFCRDLDLLALGDARATTLGVSVPHTQFWALLLAVALTATGVAACGPISFIGLVVPHLMRSLVGGRHRRLLP 270

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1583902580 296 ATALGGAIYMVGADIVSRVIIPQQILPIGVVTALFGAPAFAIILYRVR 343
Cdd:PRK09777  271 VSALTGALLLLLADLLARIIHPPLELPAGVLTAIIGAPWFFWLLVRMR 318
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
63-343 2.51e-49

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 175.03  E-value: 2.51e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580  63 IHQGIVWDYRLSRALVAASAGASLSLSGAILQALLRNPLAEPYVLGISAGASTGAVCVMILGFGYGILGLSSGAFIGAVI 142
Cdd:PRK10577   53 LEQLLLHYSRLPRLAIALLVGAALGLAGALLQQVLRNPLASPTTLGVAAGAQLALVLATLFAPALLALASQLAAFAGGLL 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 143 AFLLVGFLATGAGGSGERIILCGVAGSQLFNALTSYIVttSANAEQARGILFWLLGSLSGVRWPDVYLSVPIALAGFIIC 222
Cdd:PRK10577  133 AAALVFALAGGKRLSPLRLVLAGMVVSLYLGALTTLLL--LFNEQYLQGLFLWGAGSLAQNDWSGVQRLLPRLLVGLLLL 210

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 223 MAHVRALDAFAFGTDAAASLGIAVRRVQIVLFGMTAAMTASVVSMVGSIGFVGLVIPHAARFLVGPGHGRLLPATALGGA 302
Cdd:PRK10577  211 LLLARPLTLLGLGDDVARSLGLAVSLTRLAALALAVLLSAAVVSAVGPIGFIGLAAPNLARLLGARRLRARLPLSPLIGA 290

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1583902580 303 IYMVGADIVSRVIIP--QQILPIGVVTALFGAPAFAIILYRVR 343
Cdd:PRK10577  291 LLLLLTDQLVRLLAGvgGELLPTGAVTALIGAPLLLWLLPRLR 333
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 77-339 9.19e-47

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 159.26  E-value: 9.19e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580  77 LVAASAGASLSLSGAILQALLRNPLAEPYVLGISAGASTGAVCVMILGFGYGILGLSSGAFIGAVIAFLLVGFLATGAGG 156
Cdd:cd06550     2 LAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAGALAIALLVLLLASRGGL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 157 SGERIILCGVAGSQLFNALTSYIVTTSANAEQArgILFWLLGSLSGVRWPDVYLSVPIALAGFIICMAHVRALDAFAFGT 236
Cdd:cd06550    82 SPSKLILIGIVLSAFFSAGVILISLLSDDSLQD--LNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFDE 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 237 DAAASLGIAVRRVQIVLFGMTAAMTASVVSMVGSIGFVGLVIPHAARFLVGPGHGRLLPATALGGAIYMVGADIVSRVII 316
Cdd:cd06550   160 DLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRTLL 239

                         250       260
                  ....*....|....*....|...
gi 1583902580 317 PQQiLPIGVVTALFGAPAFAIIL 339
Cdd:cd06550   240 PSE-LPVGPVTALLGAPYFLYLL 261
fecC PRK11228
iron-dicitrate ABC transporter permease FecC;
65-344 1.31e-43

iron-dicitrate ABC transporter permease FecC;


Pssm-ID: 183042  Cd Length: 323  Bit Score: 152.93  E-value: 1.31e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580  65 QGIVWDYRLSRALVAASAGASLSLSGAILQALLRNPLAEPYVLGISAGASTGAVCVMILG----FGYGILGLSSgafIGA 140
Cdd:PRK11228   44 EALVQNLRLPRSLVAVLIGASLALAGALLQTLTHNPLASPSLLGINSGAALAMALTSALSptpfAGYSLAFIAA---CGG 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 141 VIAFLLVgFLATGA---GGSGERIILCGVAGSQLFNALTSYIVTTSAnaEQARGILFWLLGSLSGVRWPDVYLSVPIALA 217
Cdd:PRK11228  121 GLSWLLV-MTAGGGwrhTHDRNRLILAGIALSALCMALTRITLLLAE--DHAYGIFYWLAGGVSHARWQEVWQLLPFVVT 197

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 218 GFIICMAHVRALDAFAFGTDAAASLGIAVRRVQIVLFGMTAAMTASVVSMVGSIGFVGLVIPHAARFLVGPGHGRLLPAT 297
Cdd:PRK11228  198 AVPVVLLLANQLNLLNLSDSSAHTLGVNLTRLRLVVNMLVLLLVGACVSVAGPVAFIGLLVPHLARFWIGYDQRNVLPMS 277

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1583902580 298 ALGGAIYMVGADIVSRVIIPQQILPIGVVTALFGAPAFaIILYRVRG 344
Cdd:PRK11228  278 MLLGATLMLLADLLARALAFPGELPAGAVLALIGAPCF-VWLARRRG 323
PRK10441 PRK10441
Fe(3+)-siderophore ABC transporter permease;
28-344 1.23e-37

Fe(3+)-siderophore ABC transporter permease;


Pssm-ID: 182464  Cd Length: 335  Bit Score: 137.53  E-value: 1.23e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580  28 MISLAVSIGEIAIPVATTAEAVSNRLFGTNFEIsrihqgiVWDYRLSRALVAASAGASLSLSGAILQALLRNPLAEPYVL 107
Cdd:PRK10441   23 ATALSLLIGAKSLPASVVLEALSGTCQSADCTI-------VLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLL 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 108 GISAGASTGAVCVMILGFGYGILGLSSGAFIGAVIAFLLVGFLATGAGG--SGERIILCGVAGSQLFNALTSYIVTTSAN 185
Cdd:PRK10441   96 GVNAGASFAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGSQGGGqlSPVRLTLAGVALAAVLEGLTSGIALLNPD 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 186 A-EQARgilFWLLGSLSGVRWPDVYLSVPIALAGFIICMAHVRALDAFAFGTDAAASLGIAVRRVQIVLFGMTAAMTASV 264
Cdd:PRK10441  176 VyDQLR---FWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQLIGLLAITVLCGSA 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 265 VSMVGSIGFVGLVIPHAARFLVGPGHGRLLPATALGGAIYMVGADIVSRVIIPQQiLPIGVVTALFGAPAFAIILYRVRG 344
Cdd:PRK10441  253 TAVVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRLLVPGE-LRVSVVSAFIGAPVLIFLVRRKTR 331
PRK10440 PRK10440
iron-enterobactin ABC transporter permease;
41-341 1.09e-36

iron-enterobactin ABC transporter permease;


Pssm-ID: 182463  Cd Length: 330  Bit Score: 134.84  E-value: 1.09e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580  41 PVATTAEAVSNRLFGtnfEISRIHQGIVWDYRLSRALVAASAGASLSLSGAILQALLRNPLAEPYVLGISAGASTGAVCV 120
Cdd:PRK10440   31 AVTLETSQVFAALMG---DAPRSMTMVVTEWRLPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWSGVLVA 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 121 MILgFGYGILGLSSGAFIGAVIAFLLVGFLATGAGGSGERIILCGVAGSQLFNALTSYIvTTSANAEQARGILFWLLGSL 200
Cdd:PRK10440  108 MVL-FGQDLTAIALAAMAGGIVTSLLVWLLAWRNGIDTFRLIIIGIGVRAMLVAFNTWL-LLKASLETALTAGLWNAGSL 185

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 201 SGVRWPDVYLSVPIALAGFIICMAHVRALDAFAFGTDAAASLGIAVRRVQIVLFGMTAAMTASVVSMVGSIGFVGLVIPH 280
Cdd:PRK10440  186 NGLTWAKTSPSAPIIILMLIAAALLVRRMRLLEMGDDTACALGVSVERSRLLLMLVAVVLTAAATALAGPISFIALVAPH 265

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1583902580 281 AARFLVGPGHGRLLpATALGGAIYMVGADIVSRVIIPQQILPIGVVTALFGAPAFAIILYR 341
Cdd:PRK10440  266 IARRLSGTARWGLT-QAALCGALLLLAADLCAQQLFMPYQLPVGVVTVSLGGIYLIVLLIQ 325
ZnuB COG1108
ABC-type Mn2+/Zn2+ transport system, permease component [Inorganic ion transport and ...
 108-307 9.72e-05

ABC-type Mn2+/Zn2+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440725  Cd Length: 260  Bit Score: 43.50  E-value: 9.72e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 108 GISAGASTGAVCVMILGFGYGIlglssGAFIGAVIAFLLVGFLATGAGGSGERIIlcGVAGSQLFnALTsyIVTTSANAE 187
Cdd:COG1108    36 ALSHAALPGVALAFLLGLSPLL-----GALVAGLLAALLIGLLRRRSRLKEDTAI--GIVFSGGF-ALG--VLLISLVPG 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583902580 188 QARGILFWLLGSLSGVRWPDVYLSVPIALAGFIICMAHVRALDAFAFGTDAAASLGIAVRRVQIVLFGMTAAMTASVVSM 267
Cdd:COG1108   106 SAVDLMSYLFGSILAVSRSDLLLLAVLAAVVLLLLLLFYRELLLVSFDPELARASGLPVRLLHLLLLVLLALTVVAALQA 185

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1583902580 268 VGSIGFVGL-VIPHAARFLVGPGHGRLLPATALGGAIYMVG 307
Cdd:COG1108   186 VGALLVSALlIIPAATARLLTRSLRRMLLLAVLIGVLSSVL 226
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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