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Conserved domains on  [gi|1584175981|ref|WP_130873995|]
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sensor histidine kinase [[Pseudopropionibacterium] massiliense]

Protein Classification

sensor histidine kinase( domain architecture ID 12155181)

sensor histidine kinase, part of a two-component regulatory system, functions as a protein kinase that phosphorylates a target protein in response to various signals

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ComP COG4585
Signal transduction histidine kinase ComP [Signal transduction mechanisms];
188-430 1.25e-52

Signal transduction histidine kinase ComP [Signal transduction mechanisms];


:

Pssm-ID: 443642 [Multi-domain]  Cd Length: 252  Bit Score: 176.73  E-value: 1.25e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 188 LLAIKLAPTVFRGLAWLHGSVGDTLLNLRARNDARIGQLKDSRAAVQRAETGALRKLERDIHDGPQQRLVRLNMDLARTR 267
Cdd:COG4585     1 LLALALLGALALLVGALLGLLLALVLLRARRAERAAELERELAARAEEAREEERRRIARELHDGVGQSLSAIKLQLEAAR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 268 RQLDQNPERAREMLGDAMAQTQETLAELRQLSRGIAPPVLVDRGLEAAIDEAAAR----SAIPVTV-YSSIPGKLPDHVE 342
Cdd:COG4585    81 RLLDADPEAAREELEEIRELAREALAELRRLVRGLRPPALDDLGLAAALEELAERllraAGIRVELdVDGDPDRLPPEVE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 343 QAAYFVISESLVNANKHSGATTIDLITAVQDGWLYATITDDGVG---GASTAKGHGLAGLEERLQGVDGRLTVTSPAGGP 419
Cdd:COG4585   161 LALYRIVQEALTNALKHAGATRVTVTLEVDDGELTLTVRDDGVGfdpEAAPGGGLGLRGMRERAEALGGTLTIGSAPGGG 240

                         250
                  ....*....|.
gi 1584175981 420 TTIEAVIPCES 430
Cdd:COG4585   241 TRVRATLPLAA 251
Sensor pfam13796
Putative sensor; This family is often found at the N-terminus of proteins containing pfam07730 ...
 17-213 1.12e-24

Putative sensor; This family is often found at the N-terminus of proteins containing pfam07730 and pfam02518. The N-termini of proteins containing these two domains often function in stimulus sensing.


:

Pssm-ID: 433485  Cd Length: 180  Bit Score: 100.03  E-value: 1.12e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981  17 YLLLGWPVMLMAFCTVIPLVSLGGGLLIIWLGIPILTFALLLTRGFATVERHAQARLFGHEPAALHYRQRREGDSWFKAM 96
Cdd:pfam13796   1 YLLLGLPLGLAAFVLLVTGLSLGAGLLVTLVGLPLLAGALLAARGLAAVERRRARLLLGVPVPRPYRAPPPVGPGLLAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981  97 FNVIADPQSWLDVLWVFVGFITSTITWSLAVTWVALCTGPVTGPVSALLneifhsDGGGLAYLYWWGTGFtpmlnstlvr 176
Cdd:pfam13796  81 RARLTDPATWRDLLYLLLHFPLGLVAFVVAVVLLAVALGLLTAPLWAWV------LPGDVDQKLWYVDTW---------- 144

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1584175981 177 iIDALIYIVVGLLAIKLAPTVFRGLAWLHGSVGDTLL 213
Cdd:pfam13796 145 -PRALGVAVLGLLLLLVLPWVVRGLARLQALLARALL 180
 
Name Accession Description Interval E-value
ComP COG4585
Signal transduction histidine kinase ComP [Signal transduction mechanisms];
188-430 1.25e-52

Signal transduction histidine kinase ComP [Signal transduction mechanisms];


Pssm-ID: 443642 [Multi-domain]  Cd Length: 252  Bit Score: 176.73  E-value: 1.25e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 188 LLAIKLAPTVFRGLAWLHGSVGDTLLNLRARNDARIGQLKDSRAAVQRAETGALRKLERDIHDGPQQRLVRLNMDLARTR 267
Cdd:COG4585     1 LLALALLGALALLVGALLGLLLALVLLRARRAERAAELERELAARAEEAREEERRRIARELHDGVGQSLSAIKLQLEAAR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 268 RQLDQNPERAREMLGDAMAQTQETLAELRQLSRGIAPPVLVDRGLEAAIDEAAAR----SAIPVTV-YSSIPGKLPDHVE 342
Cdd:COG4585    81 RLLDADPEAAREELEEIRELAREALAELRRLVRGLRPPALDDLGLAAALEELAERllraAGIRVELdVDGDPDRLPPEVE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 343 QAAYFVISESLVNANKHSGATTIDLITAVQDGWLYATITDDGVG---GASTAKGHGLAGLEERLQGVDGRLTVTSPAGGP 419
Cdd:COG4585   161 LALYRIVQEALTNALKHAGATRVTVTLEVDDGELTLTVRDDGVGfdpEAAPGGGLGLRGMRERAEALGGTLTIGSAPGGG 240

                         250
                  ....*....|.
gi 1584175981 420 TTIEAVIPCES 430
Cdd:COG4585   241 TRVRATLPLAA 251
Sensor pfam13796
Putative sensor; This family is often found at the N-terminus of proteins containing pfam07730 ...
 17-213 1.12e-24

Putative sensor; This family is often found at the N-terminus of proteins containing pfam07730 and pfam02518. The N-termini of proteins containing these two domains often function in stimulus sensing.


Pssm-ID: 433485  Cd Length: 180  Bit Score: 100.03  E-value: 1.12e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981  17 YLLLGWPVMLMAFCTVIPLVSLGGGLLIIWLGIPILTFALLLTRGFATVERHAQARLFGHEPAALHYRQRREGDSWFKAM 96
Cdd:pfam13796   1 YLLLGLPLGLAAFVLLVTGLSLGAGLLVTLVGLPLLAGALLAARGLAAVERRRARLLLGVPVPRPYRAPPPVGPGLLAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981  97 FNVIADPQSWLDVLWVFVGFITSTITWSLAVTWVALCTGPVTGPVSALLneifhsDGGGLAYLYWWGTGFtpmlnstlvr 176
Cdd:pfam13796  81 RARLTDPATWRDLLYLLLHFPLGLVAFVVAVVLLAVALGLLTAPLWAWV------LPGDVDQKLWYVDTW---------- 144

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1584175981 177 iIDALIYIVVGLLAIKLAPTVFRGLAWLHGSVGDTLL 213
Cdd:pfam13796 145 -PRALGVAVLGLLLLLVLPWVVRGLARLQALLARALL 180
HATPase_UhpB-NarQ-NarX-like cd16917
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
 345-427 2.72e-16

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli UhpB, NarQ and NarX, and Bacillus subtilis YdfH, YhcY and YfiJ; This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs) such as Escherichia coli UhpB, a HK of the UhpB-UhpA TCS, NarQ and NarX, HKs of the NarQ-NarP and NarX-NarL TCSs, respectively, and Bacillus YdfH, YhcY and YfiJ HKs, of the YdfH-YdfI, YhcY-YhcZ and YfiJ-YfiK TCSs, respectively. In addition, it includes Bacillus YxjM, ComP, LiaS and DesK, HKs of the YxjM-YxjML, ComP-ComA, LiaS-LiaR, DesR-DesK TCSs, respectively. Proteins having this HATPase domain have a histidine kinase dimerization and phosphoacceptor domain; some have accessory domains such as GAF, HAMP, PAS and MASE sensor domains.


Pssm-ID: 340394 [Multi-domain]  Cd Length: 87  Bit Score: 73.74  E-value: 2.72e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 345 AYFVISESLVNANKHSGATTIDLITAVQDGWLYATITDDGVGGASTAK----GHGLAGLEERLQGVDGRLTVTSPAGGPT 420
Cdd:cd16917     1 LYRIVQEALTNALKHAGASRVRVTLSYTADELTLTVVDDGVGFDGPAPpgggGFGLLGMRERAELLGGTLTIGSRPGGGT 80


                  ....*..
gi 1584175981 421 TIEAVIP 427
Cdd:cd16917    81 RVTARLP 87
HisKA_3 pfam07730
Histidine kinase; This is the dimerization and phosphoacceptor domain of a sub-family of ...
 242-307 8.34e-12

Histidine kinase; This is the dimerization and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with pfam00512 and pfam07536.


Pssm-ID: 429624 [Multi-domain]  Cd Length: 68  Bit Score: 60.33  E-value: 8.34e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1584175981 242 RKLERDIHDGPQQRLVRLNMDLARTRRQLDQNPERAREMLGDAMAQTQETLAELRQLSRGIAPPVL 307
Cdd:pfam07730   3 NRIARELHDSVGQSLTAIKLQLELARRLLDRDPEEAREQLDAIRELAREALQELRRLLGDLRPPAL 68
PRK10935 PRK10935
nitrate/nitrite two-component system sensor histidine kinase NarQ;
246-422 2.90e-10

nitrate/nitrite two-component system sensor histidine kinase NarQ;


Pssm-ID: 236800 [Multi-domain]  Cd Length: 565  Bit Score: 62.18  E-value: 2.90e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 246 RDIHDGPQQRLVRLNMDLARTRRQLDQNPERAR-------EMLGDAMAQTQETLAELRqLSrgIAPPVLVDrGLEAAIDE 318
Cdd:PRK10935  369 RELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQsiiaefdQALSDAYRQLRELLTTFR-LT--IQEANLGS-ALEEMLDQ 444

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 319 AAARSAIPVTVYSSIPGKLPD-----HVEQaayfVISESLVNANKHSGATTIDlITAVQ--DGWLYATITDDGVGGASTA 391
Cdd:PRK10935  445 LRNQTDAKITLDCRLPSQALDaqqqvHLLQ----IIREATLNAIKHANASEIA-VSCVTnpDGEHTVSIRDDGIGIGELK 519

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1584175981 392 K--GH-GLAGLEERLQGVDGRLTVTSPAGGPTTI 422
Cdd:PRK10935  520 EpeGHyGLNIMQERAERLGGTLTISQPPGGGTTV 553
HATPase_c smart00387
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
 338-427 5.54e-06

Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.


Pssm-ID: 214643 [Multi-domain]  Cd Length: 111  Bit Score: 44.95  E-value: 5.54e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981  338 PDHVEQaayfVISESLVNANKHSGA-TTIDLITAVQDGWLYATITDDGVG------------------GASTAKGHGLaG 398
Cdd:smart00387   3 PDRLRQ----VLSNLLDNAIKYTPEgGRITVTLERDGDHVEITVEDNGPGippedlekifepffrtdkRSRKIGGTGL-G 77

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1584175981  399 L---EERLQGVDGRLTVTSPAGGPTTIEAVIP 427
Cdd:smart00387  78 LsivKKLVELHGGEISVESEPGGGTTFTITLP 109
 
Name Accession Description Interval E-value
ComP COG4585
Signal transduction histidine kinase ComP [Signal transduction mechanisms];
188-430 1.25e-52

Signal transduction histidine kinase ComP [Signal transduction mechanisms];


Pssm-ID: 443642 [Multi-domain]  Cd Length: 252  Bit Score: 176.73  E-value: 1.25e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 188 LLAIKLAPTVFRGLAWLHGSVGDTLLNLRARNDARIGQLKDSRAAVQRAETGALRKLERDIHDGPQQRLVRLNMDLARTR 267
Cdd:COG4585     1 LLALALLGALALLVGALLGLLLALVLLRARRAERAAELERELAARAEEAREEERRRIARELHDGVGQSLSAIKLQLEAAR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 268 RQLDQNPERAREMLGDAMAQTQETLAELRQLSRGIAPPVLVDRGLEAAIDEAAAR----SAIPVTV-YSSIPGKLPDHVE 342
Cdd:COG4585    81 RLLDADPEAAREELEEIRELAREALAELRRLVRGLRPPALDDLGLAAALEELAERllraAGIRVELdVDGDPDRLPPEVE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 343 QAAYFVISESLVNANKHSGATTIDLITAVQDGWLYATITDDGVG---GASTAKGHGLAGLEERLQGVDGRLTVTSPAGGP 419
Cdd:COG4585   161 LALYRIVQEALTNALKHAGATRVTVTLEVDDGELTLTVRDDGVGfdpEAAPGGGLGLRGMRERAEALGGTLTIGSAPGGG 240

                         250
                  ....*....|.
gi 1584175981 420 TTIEAVIPCES 430
Cdd:COG4585   241 TRVRATLPLAA 251
Sensor pfam13796
Putative sensor; This family is often found at the N-terminus of proteins containing pfam07730 ...
 17-213 1.12e-24

Putative sensor; This family is often found at the N-terminus of proteins containing pfam07730 and pfam02518. The N-termini of proteins containing these two domains often function in stimulus sensing.


Pssm-ID: 433485  Cd Length: 180  Bit Score: 100.03  E-value: 1.12e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981  17 YLLLGWPVMLMAFCTVIPLVSLGGGLLIIWLGIPILTFALLLTRGFATVERHAQARLFGHEPAALHYRQRREGDSWFKAM 96
Cdd:pfam13796   1 YLLLGLPLGLAAFVLLVTGLSLGAGLLVTLVGLPLLAGALLAARGLAAVERRRARLLLGVPVPRPYRAPPPVGPGLLAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981  97 FNVIADPQSWLDVLWVFVGFITSTITWSLAVTWVALCTGPVTGPVSALLneifhsDGGGLAYLYWWGTGFtpmlnstlvr 176
Cdd:pfam13796  81 RARLTDPATWRDLLYLLLHFPLGLVAFVVAVVLLAVALGLLTAPLWAWV------LPGDVDQKLWYVDTW---------- 144

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1584175981 177 iIDALIYIVVGLLAIKLAPTVFRGLAWLHGSVGDTLL 213
Cdd:pfam13796 145 -PRALGVAVLGLLLLLVLPWVVRGLARLQALLARALL 180
HATPase_UhpB-NarQ-NarX-like cd16917
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
 345-427 2.72e-16

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli UhpB, NarQ and NarX, and Bacillus subtilis YdfH, YhcY and YfiJ; This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs) such as Escherichia coli UhpB, a HK of the UhpB-UhpA TCS, NarQ and NarX, HKs of the NarQ-NarP and NarX-NarL TCSs, respectively, and Bacillus YdfH, YhcY and YfiJ HKs, of the YdfH-YdfI, YhcY-YhcZ and YfiJ-YfiK TCSs, respectively. In addition, it includes Bacillus YxjM, ComP, LiaS and DesK, HKs of the YxjM-YxjML, ComP-ComA, LiaS-LiaR, DesR-DesK TCSs, respectively. Proteins having this HATPase domain have a histidine kinase dimerization and phosphoacceptor domain; some have accessory domains such as GAF, HAMP, PAS and MASE sensor domains.


Pssm-ID: 340394 [Multi-domain]  Cd Length: 87  Bit Score: 73.74  E-value: 2.72e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 345 AYFVISESLVNANKHSGATTIDLITAVQDGWLYATITDDGVGGASTAK----GHGLAGLEERLQGVDGRLTVTSPAGGPT 420
Cdd:cd16917     1 LYRIVQEALTNALKHAGASRVRVTLSYTADELTLTVVDDGVGFDGPAPpgggGFGLLGMRERAELLGGTLTIGSRPGGGT 80


                  ....*..
gi 1584175981 421 TIEAVIP 427
Cdd:cd16917    81 RVTARLP 87
UhpB COG3851
Signal transduction histidine kinase UhpB, glucose-6-phosphate specific [Signal transduction ...
 156-427 8.49e-16

Signal transduction histidine kinase UhpB, glucose-6-phosphate specific [Signal transduction mechanisms];


Pssm-ID: 443060 [Multi-domain]  Cd Length: 493  Bit Score: 79.28  E-value: 8.49e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 156 LAYLY-WWGTGFTPMLNS---TLVRIIDALIYIVVGLLAIKLAPTVFRGLawlhGSVGDTLLNLRARNDARigqLKDSRA 231
Cdd:COG3851   208 LAYRYgWQGAVLATLLNSvalIAARQISSFHPLADLLLFLAAQSLTGLLL----GAAIQRQRQLNQQLEQE---LRENRA 280

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 232 AVQR---AETGALRKLERDIHD--GPQQRLVRLNMDLARtrrQLDQNPEraremlGDAMAQTQETLAE-----LRQLSRG 301
Cdd:COG3851   281 LARQlvsAEESERREIARELHDeiGQNITAIRTQASILK---RLAPQPE------IEQSAQSIESLALriydtTRRLLDR 351

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 302 IAPPVLVDRGLEAAIDEAAARSAIP---VTVYSSIPGK---LPDHVEQAAYFVISESLVNANKHSGATTIDLITAVQDGW 375
Cdd:COG3851   352 LRPAVLDELGLEEALRELPRELAFEepgISCQLDLRGDpslLDDTLQLTLYRLVQEALTNILKHAEASQIRISLSQDKRL 431

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1584175981 376 LYATITDDGVG--GASTAKGHGLAGLEERLQGVDGRLTVTSPAGGpTTIEAVIP 427
Cdd:COG3851   432 LSLEIRDDGIGlpPELRAKGFGLRGMRERVRALGGDFRLSSAPKG-TRLSVLLP 484
HisKA_3 pfam07730
Histidine kinase; This is the dimerization and phosphoacceptor domain of a sub-family of ...
 242-307 8.34e-12

Histidine kinase; This is the dimerization and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with pfam00512 and pfam07536.


Pssm-ID: 429624 [Multi-domain]  Cd Length: 68  Bit Score: 60.33  E-value: 8.34e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1584175981 242 RKLERDIHDGPQQRLVRLNMDLARTRRQLDQNPERAREMLGDAMAQTQETLAELRQLSRGIAPPVL 307
Cdd:pfam07730   3 NRIARELHDSVGQSLTAIKLQLELARRLLDRDPEEAREQLDAIRELAREALQELRRLLGDLRPPAL 68
PRK10935 PRK10935
nitrate/nitrite two-component system sensor histidine kinase NarQ;
246-422 2.90e-10

nitrate/nitrite two-component system sensor histidine kinase NarQ;


Pssm-ID: 236800 [Multi-domain]  Cd Length: 565  Bit Score: 62.18  E-value: 2.90e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 246 RDIHDGPQQRLVRLNMDLARTRRQLDQNPERAR-------EMLGDAMAQTQETLAELRqLSrgIAPPVLVDrGLEAAIDE 318
Cdd:PRK10935  369 RELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQsiiaefdQALSDAYRQLRELLTTFR-LT--IQEANLGS-ALEEMLDQ 444

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 319 AAARSAIPVTVYSSIPGKLPD-----HVEQaayfVISESLVNANKHSGATTIDlITAVQ--DGWLYATITDDGVGGASTA 391
Cdd:PRK10935  445 LRNQTDAKITLDCRLPSQALDaqqqvHLLQ----IIREATLNAIKHANASEIA-VSCVTnpDGEHTVSIRDDGIGIGELK 519

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1584175981 392 K--GH-GLAGLEERLQGVDGRLTVTSPAGGPTTI 422
Cdd:PRK10935  520 EpeGHyGLNIMQERAERLGGTLTISQPPGGGTTV 553
PRK10600 PRK10600
nitrate/nitrite two-component system sensor histidine kinase NarX;
246-420 1.84e-09

nitrate/nitrite two-component system sensor histidine kinase NarX;


Pssm-ID: 182581 [Multi-domain]  Cd Length: 569  Bit Score: 59.68  E-value: 1.84e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 246 RDIHDGPQQRLVRLNMDLARTRRQLDQNPERAREMLGD-------AMAQTQETLAELR-QLSR-GIAPpvlvdrGLEAAI 316
Cdd:PRK10600  367 RELHDSIAQSLSCMKMQVSCLQMQGDALPESSRELLSQirnelnaSWRQLRELLTTFRlQLTEpGLRP------ALEASC 440

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 317 DEAAARSAIPVTV-YSSIPGKLPDHveQAAYFV--ISESLVNANKHSGATTIDLITAVQDGWLYATITDDGVG---GAST 390
Cdd:PRK10600  441 EEFSARFGFPVKLdYQLPPRLVPSH--QAIHLLqiAREALSNALKHAQASEVVVTVAQNQNQVKLSVQDNGCGvpeNAER 518

                         170       180       190
                  ....*....|....*....|....*....|
gi 1584175981 391 AKGHGLAGLEERLQGVDGRLTVTSPAGGPT 420
Cdd:PRK10600  519 SNHYGLIIMRDRAQSLRGDCRVRRRESGGT 548
PRK11644 PRK11644
signal transduction histidine-protein kinase/phosphatase UhpB;
296-427 4.30e-08

signal transduction histidine-protein kinase/phosphatase UhpB;


Pssm-ID: 236945 [Multi-domain]  Cd Length: 495  Bit Score: 54.98  E-value: 4.30e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 296 RQLSRgIAPPVLVDRGLEAAIdEAAARSAIPVTvySSIPGKLPDHVEQAA---------YFVISESLVNANKHSGATTID 366
Cdd:PRK11644  357 RLLGR-LRPRQLDDLTLEQAI-RSLMREMELED--RGIVSHLDWRIDESAlsetqrvtlFRVCQEGLNNIVKHADASAVT 432

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1584175981 367 LITAVQDGWLYATITDDGVG--GASTAKGHGLAGLEERLQGVDGRLTVTSPAGgpTTIEAVIP 427
Cdd:PRK11644  433 LQGWQQDERLMLVIEDDGSGlpPGSGQQGFGLRGMRERVTALGGTLTISCTHG--TRLSVSLP 493
HATPase_c pfam02518
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the ...
 341-427 6.22e-07

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.


Pssm-ID: 460579 [Multi-domain]  Cd Length: 109  Bit Score: 47.75  E-value: 6.22e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 341 VEQAAYFVISESLVNANKHSGATTIDLITAVQDGWLYATITDDGVG----------------GASTAKGHG--LAGLEER 402
Cdd:pfam02518   2 DELRLRQVLSNLLDNALKHAAKAGEITVTLSEGGELTLTVEDNGIGippedlprifepfstaDKRGGGGTGlgLSIVRKL 81

                          90       100
                  ....*....|....*....|....*
gi 1584175981 403 LQGVDGRLTVTSPAGGPTTIEAVIP 427
Cdd:pfam02518  82 VELLGGTITVESEPGGGTTVTLTLP 106
KdpD COG2205
K+-sensing histidine kinase KdpD [Signal transduction mechanisms];
267-427 1.95e-06

K+-sensing histidine kinase KdpD [Signal transduction mechanisms];


Pssm-ID: 441807 [Multi-domain]  Cd Length: 239  Bit Score: 48.75  E-value: 1.95e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 267 RRQLDQNPERAREMLGDAMAQTQ------ETLAELRQLSRGIAPPVLVDRGLEAAIDEAAAR-----SAIPVTVYSSIPG 335
Cdd:COG2205    42 LDEEDLSPEERRELLEIIRESAErllrliEDLLDLSRLESGKLSLELEPVDLAELLEEAVEElrplaEEKGIRLELDLPP 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 336 KLP------DHVEQaayfVISESLVNANKHSGA-TTIDLITAVQDGWLYATITDDGVG-----------------GASTA 391
Cdd:COG2205   122 ELPlvyadpELLEQ----VLANLLDNAIKYSPPgGTITISARREGDGVRISVSDNGPGipeeeleriferfyrgdNSRGE 197

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1584175981 392 KGHGLaGL-------EerLQGvdGRLTVTSPAGGPTTIEAVIP 427
Cdd:COG2205   198 GGTGL-GLaivkrivE--AHG--GTIWVESEPGGGTTFTVTLP 235
HATPase_c smart00387
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
 338-427 5.54e-06

Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.


Pssm-ID: 214643 [Multi-domain]  Cd Length: 111  Bit Score: 44.95  E-value: 5.54e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981  338 PDHVEQaayfVISESLVNANKHSGA-TTIDLITAVQDGWLYATITDDGVG------------------GASTAKGHGLaG 398
Cdd:smart00387   3 PDRLRQ----VLSNLLDNAIKYTPEgGRITVTLERDGDHVEITVEDNGPGippedlekifepffrtdkRSRKIGGTGL-G 77

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1584175981  399 L---EERLQGVDGRLTVTSPAGGPTTIEAVIP 427
Cdd:smart00387  78 LsivKKLVELHGGEISVESEPGGGTTFTITLP 109
COG4191 COG4191
Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal ...
 121-427 5.52e-05

Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms];


Pssm-ID: 443345 [Multi-domain]  Cd Length: 361  Bit Score: 45.17  E-value: 5.52e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 121 ITWSLAVTWVALCTGPVTGPVSALLNEIFHSDGGGLAYLYWWGTGFTPMLNSTLVRIIDALIYIVVGLLAIKLAPTVFRG 200
Cdd:COG4191     7 LLLLLLALLRALALALALLLLLLLLLLALLLLLLALLLALLALLLLLLLLLLLLLLELLLLLLALLGGLLRLLLLLGLLL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 201 LAWLHGSVGDTLLNLRARNDARIGQLKDSRAAVQRAETgALRKLERDIHDgpQQRL--------------------VRLN 260
Cdd:COG4191    87 LLLLEALLLLLLAALDAEENAELEELERDITELERAEE-ELRELQEQLVQ--SEKLaalgelaagiaheinnplaaILGN 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 261 MDLARTRRQLDQNPERAREMLGDAMAQTQ---ETLAELRQLSR-GIAPPVLVDrgLEAAIDEAA--ARSAIP---VTVYS 331
Cdd:COG4191   164 AELLRRRLEDEPDPEELREALERILEGAEraaEIVRSLRAFSRrDEEEREPVD--LNELIDEALelLRPRLKargIEVEL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 332 SIPGKLP------DHVEQaayfVISESLVNA-----NKHSGatTIDLITAVQDGWLYATITDDGVGGA------------ 388
Cdd:COG4191   242 DLPPDLPpvlgdpGQLEQ----VLLNLLINAidameEGEGG--RITISTRREGDYVVISVRDNGPGIPpevlerifepff 315

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1584175981 389 ---STAKGHGL-----AGLEERLQgvdGRLTVTSPAGGPTTIEAVIP 427
Cdd:COG4191   316 ttkPVGKGTGLglsisYGIVEKHG---GRIEVESEPGGGTTFTITLP 359
PRK11086 PRK11086
sensory histidine kinase DcuS; Provisional
 364-427 4.49e-04

sensory histidine kinase DcuS; Provisional


Pssm-ID: 236839 [Multi-domain]  Cd Length: 542  Bit Score: 42.59  E-value: 4.49e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1584175981 364 TIDLITAVQDGWLYATITDDGVG------------GASTA---KGHGLAGLEERLQGVDGRLTVTSPAGGPTTIEAVIP 427
Cdd:PRK11086  456 EISVSLHYRNGWLHCEVSDDGPGiapdeidaifdkGYSTKgsnRGVGLYLVKQSVENLGGSIAVESEPGVGTQFFVQIP 534
YesM COG2972
Sensor histidine kinase YesM [Signal transduction mechanisms];
353-429 5.12e-04

Sensor histidine kinase YesM [Signal transduction mechanisms];


Pssm-ID: 442211 [Multi-domain]  Cd Length: 445  Bit Score: 42.31  E-value: 5.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 353 LV-NANKHS-----GATTIDLITAVQDGWLYATITDDGVG--------------GASTAKGHGLAGLEERLQ---GVDGR 409
Cdd:COG2972   344 LVeNAIEHGiepkeGGGTIRISIRKEGDRLVITVEDNGVGmpeekleklleelsSKGEGRGIGLRNVRERLKlyyGEEYG 423

                          90       100
                  ....*....|....*....|
gi 1584175981 410 LTVTSPAGGPTTIEAVIPCE 429
Cdd:COG2972   424 LEIESEPGEGTTVTIRIPLE 443
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
210-322 3.08e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 39.90  E-value: 3.08e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981  210 DTLLNLRARNDARIGQLKDSRAAVQRAETGA---LRKLERDIHDGPQQRLVRLNMDLARTRRQLDQ-NPERAR-----EM 280
Cdd:COG4913    291 ELLEAELEELRAELARLEAELERLEARLDALreeLDELEAQIRGNGGDRLEQLEREIERLERELEErERRRARleallAA 370

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1584175981  281 LGDAMAQTQETLAELRQLSRGIAPPVLVDRG-LEAAIDEAAAR 322
Cdd:COG4913    371 LGLPLPASAEEFAALRAEAAALLEALEEELEaLEEALAEAEAA 413
KpsE COG3524
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];
213-324 4.02e-03

Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442746 [Multi-domain]  Cd Length: 370  Bit Score: 39.06  E-value: 4.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 213 LNLRARNDarigQLKDSRAAVQRAETgALRKLerdihdgpQQRLVRLnmdlaRTRRQ-LDqnPERAREMLGDAMAQTQET 291
Cdd:COG3524   170 LSERARED----AVRFAEEEVERAEE-RLRDA--------REALLAF-----RNRNGiLD--PEATAEALLQLIATLEGQ 229

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1584175981 292 LA----ELRQLSRGIAP-----PVLVDR--GLEAAIDEAAARSA 324
Cdd:COG3524   230 LAeleaELAALRSYLSPnspqvRQLRRRiaALEKQIAAERARLT 273
CitA COG3290
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction ...
 273-430 8.61e-03

Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction mechanisms];


Pssm-ID: 442519 [Multi-domain]  Cd Length: 389  Bit Score: 38.29  E-value: 8.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 273 NPERAREMLGDAMAQTQETLAELrqlSRGIAPPVLvdRG-LEAAIDEAAARSaIPVTVysSIPGKLPDHVEQAAYF--VI 349
Cdd:COG3290   215 EYDEALEYIDEISEELQELIDSL---LSRIGNPVL--AAlLLGKAARARERG-IDLTI--DIDSDLPDLPLSDTDLvtIL 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1584175981 350 SESLVNA-----NKHSGATTIDLITAVQDGWLYATITDDGVG------------GAST--AKGHGLaGL---EERLQGVD 407
Cdd:COG3290   287 GNLLDNAieaveKLPEEERRVELSIRDDGDELVIEVEDSGPGipeellekiferGFSTklGEGRGL-GLalvKQIVEKYG 365

                         170       180
                  ....*....|....*....|...
gi 1584175981 408 GRLTVTSPAGGPTTIEAVIPCES 430
Cdd:COG3290   366 GTIEVESEEGEGTVFTVRLPKEG 388
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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