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Conserved domains on  [gi|1592099448|ref|WP_132015076|]
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anti-sigma factor [Hydrogenispora ethanolica]

Protein Classification

anti-sigma factor family protein( domain architecture ID 11475862)

anti-sigma factor family protein may contain an N-terminal zinc-finger domain and belong to the zinc-associated anti-sigma factor (ZAS) family such as Bacillus subtilis anti-sigma-W factor RsiW and Mycobacterium tuberculosis anti-sigma-L factor RslA

Gene Ontology:  GO:0046872|GO:0016020
PubMed:  28319136

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RsiW COG5662
Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];
1-91 3.66e-07

Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];


:

Pssm-ID: 444381 [Multi-domain]  Cd Length: 155  Bit Score: 48.30  E-value: 3.66e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592099448   1 MNCTKIRQHLHSLVAGEAPQSLCVLLNQHIQACPDCAKELQLAEEAYRLLSEA-QPVEPVPqfgaawrSRLRSEAAQRPw 79
Cdd:COG5662     1 MTCDDVEELLHAYLDGELSPEERAEVEAHLATCPACAARLAELRRLRAALRAAlAPDEPVP-------ARLRARVMARL- 72

                          90
                  ....*....|..
gi 1592099448  80 NAPAARRWRFPA 91
Cdd:COG5662    73 PRRRRRRWRAVA 84
 
Name Accession Description Interval E-value
RsiW COG5662
Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];
1-91 3.66e-07

Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];


Pssm-ID: 444381 [Multi-domain]  Cd Length: 155  Bit Score: 48.30  E-value: 3.66e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592099448   1 MNCTKIRQHLHSLVAGEAPQSLCVLLNQHIQACPDCAKELQLAEEAYRLLSEA-QPVEPVPqfgaawrSRLRSEAAQRPw 79
Cdd:COG5662     1 MTCDDVEELLHAYLDGELSPEERAEVEAHLATCPACAARLAELRRLRAALRAAlAPDEPVP-------ARLRARVMARL- 72

                          90
                  ....*....|..
gi 1592099448  80 NAPAARRWRFPA 91
Cdd:COG5662    73 PRRRRRRWRAVA 84
zf-HC2 pfam13490
Putative zinc-finger; This is a putative zinc-finger found in some anti-sigma factor proteins.
 3-37 2.88e-03

Putative zinc-finger; This is a putative zinc-finger found in some anti-sigma factor proteins.


Pssm-ID: 463895 [Multi-domain]  Cd Length: 35  Bit Score: 34.44  E-value: 2.88e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1592099448   3 CTKIRQHLHSLVAGEAPQSLCVLLNQHIQACPDCA 37
Cdd:pfam13490   1 CEEVRELLSAYLDGELSPEERARVEAHLAGCPACR 35
 
Name Accession Description Interval E-value
RsiW COG5662
Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];
1-91 3.66e-07

Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];


Pssm-ID: 444381 [Multi-domain]  Cd Length: 155  Bit Score: 48.30  E-value: 3.66e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592099448   1 MNCTKIRQHLHSLVAGEAPQSLCVLLNQHIQACPDCAKELQLAEEAYRLLSEA-QPVEPVPqfgaawrSRLRSEAAQRPw 79
Cdd:COG5662     1 MTCDDVEELLHAYLDGELSPEERAEVEAHLATCPACAARLAELRRLRAALRAAlAPDEPVP-------ARLRARVMARL- 72

                          90
                  ....*....|..
gi 1592099448  80 NAPAARRWRFPA 91
Cdd:COG5662    73 PRRRRRRWRAVA 84
RskA COG5343
Anti-sigma-K factor RskA [Signal transduction mechanisms];
28-140 2.38e-06

Anti-sigma-K factor RskA [Signal transduction mechanisms];


Pssm-ID: 444127 [Multi-domain]  Cd Length: 239  Bit Score: 46.93  E-value: 2.38e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592099448  28 QHIQACPDCAKELQLAEEAY-RLLSEAQPVEPVPQFGAAWRSRLRSEAAQRPwnAPAARRWRFPAFRPLLPVCGVAAIVI 106
Cdd:COG5343    30 RRLASDPELAAEVAEWEERLaPLADAVEPVAPPPSLWARIEARLDAARAAAA--APAARLWRRLRFWRGLAAAAAAAALL 107

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1592099448 107 IGLAL----------NSLRIQQPVAKLATKESAPAGKVQVLRRS 140
Cdd:COG5343   108 LAVVLvwllqpqlnpAPQQVPQLVAVLAADDGGPAAVVVVDPSS 151
YlaD COG5660
Anti-sigma-YlaC factor YlaD, contains Zn-finger domain [Signal transduction mechanisms];
1-105 1.71e-05

Anti-sigma-YlaC factor YlaD, contains Zn-finger domain [Signal transduction mechanisms];


Pssm-ID: 444379 [Multi-domain]  Cd Length: 219  Bit Score: 44.38  E-value: 1.71e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592099448   1 MNCTKIRQHLHSLVAGEAPQSLCVLLNQHIQACPDCAKELQLAEEAYRLLSEAqPVEPVPQFGAAwrsrlrsEAAQRPWN 80
Cdd:COG5660     1 MDCETCREALSARLDGELEPVPAAEVDAHLAGCPACRAWLERAAALTRRLRTR-PAPEVPDLTDA-------ILAAAPPA 72

                          90       100
                  ....*....|....*....|....*
gi 1592099448  81 APAARRWRfpafRPLLPVCGVAAIV 105
Cdd:COG5660    73 FPRRRAYL----RLALALVALAQLA 93
zf-HC2 pfam13490
Putative zinc-finger; This is a putative zinc-finger found in some anti-sigma factor proteins.
 3-37 2.88e-03

Putative zinc-finger; This is a putative zinc-finger found in some anti-sigma factor proteins.


Pssm-ID: 463895 [Multi-domain]  Cd Length: 35  Bit Score: 34.44  E-value: 2.88e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1592099448   3 CTKIRQHLHSLVAGEAPQSLCVLLNQHIQACPDCA 37
Cdd:pfam13490   1 CEEVRELLSAYLDGELSPEERARVEAHLAGCPACR 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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