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Conserved domains on  [gi|1592913891|ref|WP_132761577|]
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DUF1840 domain-containing protein [Vibrio crassostreae]

Protein Classification

DUF1840 domain-containing protein( domain architecture ID 10556280)

uncharacterized DUF1840 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1840 pfam08895
Domain of unknown function (DUF1840); This family of proteins are functionally uncharacterized.
 2-104 4.79e-38

Domain of unknown function (DUF1840); This family of proteins are functionally uncharacterized.


:

Pssm-ID: 462625  Cd Length: 107  Bit Score: 123.46  E-value: 4.79e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592913891   2 LITFSCKAHASVTMFGEVGLQFIKMLGHSGTVPGAIDASEVSQALNNLRAALELEQK----QSVEENDADDDNEDEVVEA 77
Cdd:pfam08895   1 LITFKSKAYADVIMFGDVAKQLLKLMGKSGTVPGAITAEDVPAAIARLEAAIAADKAapaaAEDEDDDDDEDDPDHPPEE 80

                          90       100
                  ....*....|....*....|....*..
gi 1592913891  78 PVNIGSRAFPLVELLKAAIKEECEVMW 104
Cdd:pfam08895  81 PVSLAQRALPLIEMLRAAAKAGADVMW 107
 
Name Accession Description Interval E-value
DUF1840 pfam08895
Domain of unknown function (DUF1840); This family of proteins are functionally uncharacterized.
 2-104 4.79e-38

Domain of unknown function (DUF1840); This family of proteins are functionally uncharacterized.


Pssm-ID: 462625  Cd Length: 107  Bit Score: 123.46  E-value: 4.79e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592913891   2 LITFSCKAHASVTMFGEVGLQFIKMLGHSGTVPGAIDASEVSQALNNLRAALELEQK----QSVEENDADDDNEDEVVEA 77
Cdd:pfam08895   1 LITFKSKAYADVIMFGDVAKQLLKLMGKSGTVPGAITAEDVPAAIARLEAAIAADKAapaaAEDEDDDDDEDDPDHPPEE 80

                          90       100
                  ....*....|....*....|....*..
gi 1592913891  78 PVNIGSRAFPLVELLKAAIKEECEVMW 104
Cdd:pfam08895  81 PVSLAQRALPLIEMLRAAAKAGADVMW 107
 
Name Accession Description Interval E-value
DUF1840 pfam08895
Domain of unknown function (DUF1840); This family of proteins are functionally uncharacterized.
 2-104 4.79e-38

Domain of unknown function (DUF1840); This family of proteins are functionally uncharacterized.


Pssm-ID: 462625  Cd Length: 107  Bit Score: 123.46  E-value: 4.79e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592913891   2 LITFSCKAHASVTMFGEVGLQFIKMLGHSGTVPGAIDASEVSQALNNLRAALELEQK----QSVEENDADDDNEDEVVEA 77
Cdd:pfam08895   1 LITFKSKAYADVIMFGDVAKQLLKLMGKSGTVPGAITAEDVPAAIARLEAAIAADKAapaaAEDEDDDDDEDDPDHPPEE 80

                          90       100
                  ....*....|....*....|....*..
gi 1592913891  78 PVNIGSRAFPLVELLKAAIKEECEVMW 104
Cdd:pfam08895  81 PVSLAQRALPLIEMLRAAAKAGADVMW 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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