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Conserved domains on  [gi|1593348912|ref|WP_133061051|]
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type VI secretion system Vgr family protein, partial [Cronobacter sakazakii]

Protein Classification

type VI secretion system Vgr family protein( domain architecture ID 11466136)

type VI secretion system Vgr family protein such as type VI secretion system tip protein VgrG, a core component and effector of Type VI secretion systems (T6SSs) that are involved in the pathogenicity of several Gram-negative bacteria

Gene Ontology:  GO:0033104|GO:0033103
PubMed:  30893029|17873062

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
VgrG COG3501
Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly ...
 1-413 2.43e-144

Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly [Intracellular trafficking, secretion, and vesicular transport, Mobilome: prophages, transposons, General function prediction only];


:

Pssm-ID: 442724 [Multi-domain]  Cd Length: 743  Bit Score: 428.41  E-value: 2.43e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912   1 HTFVLRNAPFFGDNGEYLTTVAHYRFEENRYASGPDSNTLHEIRFEVIPADVPYRPAQKTPWPRTYGPQTAKVVGPQGES 80
Cdd:COG3501   302 RRFTLTGHPRADLNGEYLVTSVTHEGSQNLYSGAGGEDGGYRNRFTAIPADVPFRPPRRTPKPRIAGPQTATVVGPAGEE 381

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912  81 IWTDKYGRVKVKFHWDRLGKGDDTSSSWVRVSSAWAGQGFGGVQIPRVGDEVVVDFINGDPDRPLITGRVYNEASMPPWA 160
Cdd:COG3501   382 IHTDEYGRVKVQFHWDREGKKDENSSCWVRVAQPWAGAGWGGHFIPRVGQEVLVAFLDGDPDRPIVTGRVYNGANMPPYT 461

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912 161 LPAAATQMGFLSRSKDGspDNANALRFEDKAGEEQVWLHAEKNMDTEIENDETHSVGSNRTKTIGANETTTVKKNRTETV 240
Cdd:COG3501   462 LPANKTRSGIRTRSSPG--GGFNELRFDDKAGQEEIFLHAEKDMNTLVDNDETITVGNDRTEEVGTDETGTVAGNQGLTV 539

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912 241 VENETITVHQNRTETVDGNETITIHSNRTETVdQNEDVRIGQNQSVTVNGAQTLRVDKTKTETIALASMLNVGLAQNTNI 320
Cdd:COG3501   540 SGDQTVVVGGNQTLVVGGARTLVVGGNLAAVV-GGAAATAGGAQATLVAGALLLLAAGGALTTVGGGGTTTGGGAAATAG 618

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912 321 GAAYVLNVGAGWMTNVGAMQMHNVALKYSVNSGKDLSLSAGTTADFSAEDKITLVCGESMIVLEQNGTITLSANKIKMVG 400
Cdd:COG3501   619 GGGAGAAAGGAATAAAGAAATSAAGGASSAAAAAGGAAGAGGGGLAAAGGGGAAAAGGAGAGGAGGGAGALAAGAAAVAA 698

                         410
                  ....*....|...
gi 1593348912 401 EKVIDIDGTEINI 413
Cdd:COG3501   699 AAAGGAGGGAAAG 711
 
Name Accession Description Interval E-value
VgrG COG3501
Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly ...
 1-413 2.43e-144

Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly [Intracellular trafficking, secretion, and vesicular transport, Mobilome: prophages, transposons, General function prediction only];


Pssm-ID: 442724 [Multi-domain]  Cd Length: 743  Bit Score: 428.41  E-value: 2.43e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912   1 HTFVLRNAPFFGDNGEYLTTVAHYRFEENRYASGPDSNTLHEIRFEVIPADVPYRPAQKTPWPRTYGPQTAKVVGPQGES 80
Cdd:COG3501   302 RRFTLTGHPRADLNGEYLVTSVTHEGSQNLYSGAGGEDGGYRNRFTAIPADVPFRPPRRTPKPRIAGPQTATVVGPAGEE 381

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912  81 IWTDKYGRVKVKFHWDRLGKGDDTSSSWVRVSSAWAGQGFGGVQIPRVGDEVVVDFINGDPDRPLITGRVYNEASMPPWA 160
Cdd:COG3501   382 IHTDEYGRVKVQFHWDREGKKDENSSCWVRVAQPWAGAGWGGHFIPRVGQEVLVAFLDGDPDRPIVTGRVYNGANMPPYT 461

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912 161 LPAAATQMGFLSRSKDGspDNANALRFEDKAGEEQVWLHAEKNMDTEIENDETHSVGSNRTKTIGANETTTVKKNRTETV 240
Cdd:COG3501   462 LPANKTRSGIRTRSSPG--GGFNELRFDDKAGQEEIFLHAEKDMNTLVDNDETITVGNDRTEEVGTDETGTVAGNQGLTV 539

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912 241 VENETITVHQNRTETVDGNETITIHSNRTETVdQNEDVRIGQNQSVTVNGAQTLRVDKTKTETIALASMLNVGLAQNTNI 320
Cdd:COG3501   540 SGDQTVVVGGNQTLVVGGARTLVVGGNLAAVV-GGAAATAGGAQATLVAGALLLLAAGGALTTVGGGGTTTGGGAAATAG 618

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912 321 GAAYVLNVGAGWMTNVGAMQMHNVALKYSVNSGKDLSLSAGTTADFSAEDKITLVCGESMIVLEQNGTITLSANKIKMVG 400
Cdd:COG3501   619 GGGAGAAAGGAATAAAGAAATSAAGGASSAAAAAGGAAGAGGGGLAAAGGGGAAAAGGAGAGGAGGGAGALAAGAAAVAA 698

                         410
                  ....*....|...
gi 1593348912 401 EKVIDIDGTEINI 413
Cdd:COG3501   699 AAAGGAGGGAAAG 711
VI_Rhs_Vgr TIGR03361
type VI secretion system Vgr family protein; Members of this protein family belong to the Rhs ...
 1-221 4.30e-126

type VI secretion system Vgr family protein; Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.


Pssm-ID: 274542 [Multi-domain]  Cd Length: 513  Bit Score: 373.84  E-value: 4.30e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912   1 HTFVLRNAPFFGDNGEYLTTVAHYRFEENRYASGPD-SNTLHEIRFEVIPADVPYRPAQKTPWPRTYGPQTAKVVGPQGE 79
Cdd:TIGR03361 293 YLFTLSGHPRAALNREYLVVSVHHHGRQPQVLEESGgSGAGYRNSFQCIPATVPFRPPRRTPKPRIDGPQTATVVGPAGE 372

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912  80 SIWTDKYGRVKVKFHWDRLGKGDDTSSSWVRVSSAWAGQGFGGVQIPRVGDEVVVDFINGDPDRPLITGRVYNEASMPPW 159
Cdd:TIGR03361 373 EIYTDEYGRVKVQFHWDRYGKRDEKSSCWVRVAQPWAGNGWGSVAIPRVGQEVVVDFLEGDPDRPIVTGRVYNAENMPPY 452

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1593348912 160 ALPAAATQMGFLSRSKDGSpDNANALRFEDKAGEEQVWLHAEKNMDTEIENDETHSVGSNRT 221
Cdd:TIGR03361 453 SLPANKTQSGFRSRSSKGG-GGFNELRFEDKAGAEEIYLHAQRDMNTEVENDSTHTVGNNRT 513
Phage_base_V pfam04717
Type VI secretion system/phage-baseplate injector OB domain; Family of bacterial and phage ...
 83-151 1.50e-13

Type VI secretion system/phage-baseplate injector OB domain; Family of bacterial and phage baseplate assembly proteins responsible for forming the small spike at the end of the tail or bacterial pathogenic needle-shaft. This entry represents the OB fold part of the structure. This structure contains an unusual extra beta hairpin that forms the foundation of the spike protein's beta helix.


Pssm-ID: 428084 [Multi-domain]  Cd Length: 75  Bit Score: 65.29  E-value: 1.50e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1593348912  83 TDKYGRVKVKFHWdrlgKGDDTSSSWVRVSSAWAGQGFGGVQIPRVGDEVVVDFINGDPDRPLITGRVY 151
Cdd:pfam04717  11 PDKLGRVKVGVPW----LTDEEESGWARWAAPRAGAGRGLWFLPEVGEQVLVLFEGGDPSRPVVLGGLW 75
5 PHA02596
baseplate hub subunit and tail lysozyme; Provisional
 198-316 3.79e-11

baseplate hub subunit and tail lysozyme; Provisional


Pssm-ID: 222900 [Multi-domain]  Cd Length: 576  Bit Score: 64.78  E-value: 3.79e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912 198 LHAEKNMDTEIENDETHSVGSNRTKTIGANETTTVKKNRTETVVENETITVHQNRTETVDGNETITIHSNRTETVDQNED 277
Cdd:PHA02596  449 VNVKGNLKVVVEGDAIYYNMGNVLQTIDGNVTIFVRGNVTKTVEGNGTLYVKGNVTVQVDGNLDATVKGNATTLVEGNQT 528

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1593348912 278 VRIGQNQSVTVNGAQTLRVDKTKTETIALASMLNVGLAQ 316
Cdd:PHA02596  529 NTVNGNYKLKVEGNFDMTVGGNWSEQMAGMSSIASGTYT 567
 
Name Accession Description Interval E-value
VgrG COG3501
Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly ...
 1-413 2.43e-144

Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly [Intracellular trafficking, secretion, and vesicular transport, Mobilome: prophages, transposons, General function prediction only];


Pssm-ID: 442724 [Multi-domain]  Cd Length: 743  Bit Score: 428.41  E-value: 2.43e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912   1 HTFVLRNAPFFGDNGEYLTTVAHYRFEENRYASGPDSNTLHEIRFEVIPADVPYRPAQKTPWPRTYGPQTAKVVGPQGES 80
Cdd:COG3501   302 RRFTLTGHPRADLNGEYLVTSVTHEGSQNLYSGAGGEDGGYRNRFTAIPADVPFRPPRRTPKPRIAGPQTATVVGPAGEE 381

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912  81 IWTDKYGRVKVKFHWDRLGKGDDTSSSWVRVSSAWAGQGFGGVQIPRVGDEVVVDFINGDPDRPLITGRVYNEASMPPWA 160
Cdd:COG3501   382 IHTDEYGRVKVQFHWDREGKKDENSSCWVRVAQPWAGAGWGGHFIPRVGQEVLVAFLDGDPDRPIVTGRVYNGANMPPYT 461

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912 161 LPAAATQMGFLSRSKDGspDNANALRFEDKAGEEQVWLHAEKNMDTEIENDETHSVGSNRTKTIGANETTTVKKNRTETV 240
Cdd:COG3501   462 LPANKTRSGIRTRSSPG--GGFNELRFDDKAGQEEIFLHAEKDMNTLVDNDETITVGNDRTEEVGTDETGTVAGNQGLTV 539

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912 241 VENETITVHQNRTETVDGNETITIHSNRTETVdQNEDVRIGQNQSVTVNGAQTLRVDKTKTETIALASMLNVGLAQNTNI 320
Cdd:COG3501   540 SGDQTVVVGGNQTLVVGGARTLVVGGNLAAVV-GGAAATAGGAQATLVAGALLLLAAGGALTTVGGGGTTTGGGAAATAG 618

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912 321 GAAYVLNVGAGWMTNVGAMQMHNVALKYSVNSGKDLSLSAGTTADFSAEDKITLVCGESMIVLEQNGTITLSANKIKMVG 400
Cdd:COG3501   619 GGGAGAAAGGAATAAAGAAATSAAGGASSAAAAAGGAAGAGGGGLAAAGGGGAAAAGGAGAGGAGGGAGALAAGAAAVAA 698

                         410
                  ....*....|...
gi 1593348912 401 EKVIDIDGTEINI 413
Cdd:COG3501   699 AAAGGAGGGAAAG 711
VI_Rhs_Vgr TIGR03361
type VI secretion system Vgr family protein; Members of this protein family belong to the Rhs ...
 1-221 4.30e-126

type VI secretion system Vgr family protein; Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.


Pssm-ID: 274542 [Multi-domain]  Cd Length: 513  Bit Score: 373.84  E-value: 4.30e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912   1 HTFVLRNAPFFGDNGEYLTTVAHYRFEENRYASGPD-SNTLHEIRFEVIPADVPYRPAQKTPWPRTYGPQTAKVVGPQGE 79
Cdd:TIGR03361 293 YLFTLSGHPRAALNREYLVVSVHHHGRQPQVLEESGgSGAGYRNSFQCIPATVPFRPPRRTPKPRIDGPQTATVVGPAGE 372

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912  80 SIWTDKYGRVKVKFHWDRLGKGDDTSSSWVRVSSAWAGQGFGGVQIPRVGDEVVVDFINGDPDRPLITGRVYNEASMPPW 159
Cdd:TIGR03361 373 EIYTDEYGRVKVQFHWDRYGKRDEKSSCWVRVAQPWAGNGWGSVAIPRVGQEVVVDFLEGDPDRPIVTGRVYNAENMPPY 452

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1593348912 160 ALPAAATQMGFLSRSKDGSpDNANALRFEDKAGEEQVWLHAEKNMDTEIENDETHSVGSNRT 221
Cdd:TIGR03361 453 SLPANKTQSGFRSRSSKGG-GGFNELRFEDKAGAEEIYLHAQRDMNTEVENDSTHTVGNNRT 513
vgr_GE TIGR01646
Rhs element Vgr protein; This model represents the Vgr family of proteins, associated with ...
 1-203 1.98e-75

Rhs element Vgr protein; This model represents the Vgr family of proteins, associated with some classes of Rhs elements. This model does not include a large octapeptide repeat region, VGXXXXXX, found in the Vgr of Rhs classes G and E.


Pssm-ID: 273730 [Multi-domain]  Cd Length: 483  Bit Score: 242.76  E-value: 1.98e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912   1 HTFVLRNAPFFGDNGEYLTTVAHYRFEENRYASGPDSNTLHEiRFEVIPADVPYRPAQkTPWPRTYGPQTAKVVGPQGES 80
Cdd:TIGR01646 285 QLFVLSGHPRNDQNNGYLIVSAIHSIVQLGWDTGIQGYELPN-QFIAIEVDVIWRPAA-TPLPKVNGPQIAVVVGAQGEE 362

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912  81 IWTDKYGRVKVKFHWDRLGKGDDTSSSWVRVSSAWAGQGFGGVQIPRVGDEVVVDFINGDPDRPLITGRVYNEASMPPWA 160
Cdd:TIGR01646 363 IHTDKYGRIRVHFHWDRYGQSNDYSSCWIRVAQPWAGKNWGSLAIPRVGQEVIVGFLDGDPDRPIVTGRVYNAANPPPYR 442

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1593348912 161 LPAAATQMGFLSRSKDGSpdNANALRFEDKAGEEQVWLHAEKN 203
Cdd:TIGR01646 443 LPAHNTQSGFKSRTLRGG--SQNQLRFDDDKGKEQLQLHAERD 483
Phage_base_V pfam04717
Type VI secretion system/phage-baseplate injector OB domain; Family of bacterial and phage ...
 83-151 1.50e-13

Type VI secretion system/phage-baseplate injector OB domain; Family of bacterial and phage baseplate assembly proteins responsible for forming the small spike at the end of the tail or bacterial pathogenic needle-shaft. This entry represents the OB fold part of the structure. This structure contains an unusual extra beta hairpin that forms the foundation of the spike protein's beta helix.


Pssm-ID: 428084 [Multi-domain]  Cd Length: 75  Bit Score: 65.29  E-value: 1.50e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1593348912  83 TDKYGRVKVKFHWdrlgKGDDTSSSWVRVSSAWAGQGFGGVQIPRVGDEVVVDFINGDPDRPLITGRVY 151
Cdd:pfam04717  11 PDKLGRVKVGVPW----LTDEEESGWARWAAPRAGAGRGLWFLPEVGEQVLVLFEGGDPSRPVVLGGLW 75
5 PHA02596
baseplate hub subunit and tail lysozyme; Provisional
 198-316 3.79e-11

baseplate hub subunit and tail lysozyme; Provisional


Pssm-ID: 222900 [Multi-domain]  Cd Length: 576  Bit Score: 64.78  E-value: 3.79e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912 198 LHAEKNMDTEIENDETHSVGSNRTKTIGANETTTVKKNRTETVVENETITVHQNRTETVDGNETITIHSNRTETVDQNED 277
Cdd:PHA02596  449 VNVKGNLKVVVEGDAIYYNMGNVLQTIDGNVTIFVRGNVTKTVEGNGTLYVKGNVTVQVDGNLDATVKGNATTLVEGNQT 528

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1593348912 278 VRIGQNQSVTVNGAQTLRVDKTKTETIALASMLNVGLAQ 316
Cdd:PHA02596  529 NTVNGNYKLKVEGNFDMTVGGNWSEQMAGMSSIASGTYT 567
5 PHA02596
baseplate hub subunit and tail lysozyme; Provisional
 208-305 7.10e-09

baseplate hub subunit and tail lysozyme; Provisional


Pssm-ID: 222900 [Multi-domain]  Cd Length: 576  Bit Score: 57.46  E-value: 7.10e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912 208 IENDETHSVGSNRTKTIGANETTTVKKNRTETVVENETITVHQNRTETVDGNETITIHSNRTETVDQNEDVRIGQNQSVT 287
Cdd:PHA02596  443 VKQDRNVNVKGNLKVVVEGDAIYYNMGNVLQTIDGNVTIFVRGNVTKTVEGNGTLYVKGNVTVQVDGNLDATVKGNATTL 522

                          90
                  ....*....|....*...
gi 1593348912 288 VNGAQTLRVDKTKTETIA 305
Cdd:PHA02596  523 VEGNQTNTVNGNYKLKVE 540
COG4253 COG4253
Uncharacterized conserved protein, DUF2345 family [Function unknown];
44-195 1.62e-08

Uncharacterized conserved protein, DUF2345 family [Function unknown];


Pssm-ID: 443395 [Multi-domain]  Cd Length: 900  Bit Score: 56.59  E-value: 1.62e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912  44 RFEVIPADVPYRPAQKTPWPRTYGPQTAKVVGPQGESIWTDKYGRVKVKFHWDRLGKGDDTSSSWVRVSSAWAGQGFGGV 123
Cdd:COG4253   412 AAGPPPRTQRARRPLLPRPRGAGGPPPRVVSTRAGDTPSADDDDGGRRVVRDDRRVAWVGGGESWGAGGGAGAGGGVGGG 491

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1593348912 124 QIPRVGDEVVVDFINGDPDRPlitgrvyneASMPPWALPAAATQM---GFLSRSKDGSPDNANALRFEDKAGEEQ 195
Cdd:COG4253   492 VVPLLGDGDVVIAAEGGGPPA---------PGGGAPAAHSAAHLDhssGALSGGNSRNTGGNGLNLLDDDDDEGQ 557
5 PHA02596
baseplate hub subunit and tail lysozyme; Provisional
 206-333 2.21e-06

baseplate hub subunit and tail lysozyme; Provisional


Pssm-ID: 222900 [Multi-domain]  Cd Length: 576  Bit Score: 49.75  E-value: 2.21e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912 206 TEIENDETHSVGSNRTKTIGANETTTVKKNRTETVVENETITVHQNRTETVDGNETITIHSNRTETVDQNEDVRIGQNQS 285
Cdd:PHA02596  433 VKIVGDDYYIVKQDRNVNVKGNLKVVVEGDAIYYNMGNVLQTIDGNVTIFVRGNVTKTVEGNGTLYVKGNVTVQVDGNLD 512

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1593348912 286 VTVNGAQTLRVDKTKTETIALASMLNVGLAQNTNIGAAYVLNVGAGWM 333
Cdd:PHA02596  513 ATVKGNATTLVEGNQTNTVNGNYKLKVEGNFDMTVGGNWSEQMAGMSS 560
5 PHA02596
baseplate hub subunit and tail lysozyme; Provisional
 211-353 4.77e-06

baseplate hub subunit and tail lysozyme; Provisional


Pssm-ID: 222900 [Multi-domain]  Cd Length: 576  Bit Score: 48.60  E-value: 4.77e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912 211 DETHSVGSNRTKTIG-------ANETTTVKKNRTETVVENETITVHQNRTETVDGNETITIHSNRTETVDQNEDVrigqn 283
Cdd:PHA02596  423 EEIRPDGTRVVKIVGddyyivkQDRNVNVKGNLKVVVEGDAIYYNMGNVLQTIDGNVTIFVRGNVTKTVEGNGTL----- 497

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593348912 284 qsvTVNGAQTLRVDKTKTETIALASMLNVGLAQNTNIGAAYVLNVGAGWMTNVGAMQMHNVALKYSVNSG 353
Cdd:PHA02596  498 ---YVKGNVTVQVDGNLDATVKGNATTLVEGNQTNTVNGNYKLKVEGNFDMTVGGNWSEQMAGMSSIASG 564
Gp5_C pfam06715
Gp5 C-terminal repeat (3 copies); This repeat composes the C-terminal part of the ...
 243-265 1.03e-04

Gp5 C-terminal repeat (3 copies); This repeat composes the C-terminal part of the bacteriophage T4 baseplate protein Gp5. This region of the protein forms a needle like projection from the baseplate that is presumed to puncture the bacterial cell membrane. Structurally three copies of the repeated region trimerize to form a beta solenoid type structure. This family also includes repeats from bacterial Vgr proteins.


Pssm-ID: 310962 [Multi-domain]  Cd Length: 24  Bit Score: 38.80  E-value: 1.03e-04
                          10        20
                  ....*....|....*....|...
gi 1593348912 243 NETITVHQNRTETVDGNETITIH 265
Cdd:pfam06715   2 NETETVGGNRTVTVGGNETETVG 24
DUF6484 pfam20093
Domain of unknown function (DUF6484); This domain of unknown function is found in ...
 114-150 1.23e-04

Domain of unknown function (DUF6484); This domain of unknown function is found in uncharacterized proteins from Proteobacteria. This domain is approximately 80 amino acids in length and exhibits overlaps with pfam04717, which suggests that it has an OB fold and, thus, it belongs to the same clan. Many proteins containing this domain are related to the Type VI secretion system and to Phage-related baseplate proteins.


Pssm-ID: 466287 [Multi-domain]  Cd Length: 61  Bit Score: 39.85  E-value: 1.23e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1593348912 114 AWAGQGFGGVQIPR---------VGDEVVVDFINGDPDRPLITGRV 150
Cdd:pfam20093  16 DFPGNPGGAPVPARstvaltaadLGREVALLFEDGDPRRPLIMGLL 61
Gp5_C pfam06715
Gp5 C-terminal repeat (3 copies); This repeat composes the C-terminal part of the ...
 251-273 6.57e-04

Gp5 C-terminal repeat (3 copies); This repeat composes the C-terminal part of the bacteriophage T4 baseplate protein Gp5. This region of the protein forms a needle like projection from the baseplate that is presumed to puncture the bacterial cell membrane. Structurally three copies of the repeated region trimerize to form a beta solenoid type structure. This family also includes repeats from bacterial Vgr proteins.


Pssm-ID: 310962 [Multi-domain]  Cd Length: 24  Bit Score: 36.88  E-value: 6.57e-04
                          10        20
                  ....*....|....*....|...
gi 1593348912 251 NRTETVDGNETITIHSNRTETVD 273
Cdd:pfam06715   2 NETETVGGNRTVTVGGNETETVG 24
Gp5_C pfam06715
Gp5 C-terminal repeat (3 copies); This repeat composes the C-terminal part of the ...
 219-240 7.06e-03

Gp5 C-terminal repeat (3 copies); This repeat composes the C-terminal part of the bacteriophage T4 baseplate protein Gp5. This region of the protein forms a needle like projection from the baseplate that is presumed to puncture the bacterial cell membrane. Structurally three copies of the repeated region trimerize to form a beta solenoid type structure. This family also includes repeats from bacterial Vgr proteins.


Pssm-ID: 310962 [Multi-domain]  Cd Length: 24  Bit Score: 33.80  E-value: 7.06e-03
                          10        20
                  ....*....|....*....|..
gi 1593348912 219 NRTKTIGANETTTVKKNRTETV 240
Cdd:pfam06715   2 NETETVGGNRTVTVGGNETETV 23
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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