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Conserved domains on  [gi|1601828277|ref|WP_134216374|]
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MULTISPECIES: HD family hydrolase [Citrobacter]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YfbR super family cl43553
5'-deoxynucleotidase YfbR and related HD superfamily hydrolases [Nucleotide transport and ...
 46-119 6.32e-03

5'-deoxynucleotidase YfbR and related HD superfamily hydrolases [Nucleotide transport and metabolism, General function prediction only];


The actual alignment was detected with superfamily member COG1896:

Pssm-ID: 441500  Cd Length: 162  Bit Score: 35.61  E-value: 6.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1601828277  46 SVAQHSVLVSQI-----------VPPEFAFE-ALMHDAAEAYCQDIPAP------------------LKALLPDYQRmET 95
Cdd:COG1896    27 NVAEHSWHVALIahlladianegVDPERVAKmALLHDLVEIDTGDIPTPvkyaneakkeieraaaerLFGLLPEELR-EE 105

                          90       100
                  ....*....|....*....|....
gi 1601828277  96 YVDGLIRFKFGISLEqAAVVKYAD 119
Cdd:COG1896   106 FRALWDEFEAGETPE-ARFVKAAD 128
 
Name Accession Description Interval E-value
YfbR COG1896
5'-deoxynucleotidase YfbR and related HD superfamily hydrolases [Nucleotide transport and ...
 46-119 6.32e-03

5'-deoxynucleotidase YfbR and related HD superfamily hydrolases [Nucleotide transport and metabolism, General function prediction only];


Pssm-ID: 441500  Cd Length: 162  Bit Score: 35.61  E-value: 6.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1601828277  46 SVAQHSVLVSQI-----------VPPEFAFE-ALMHDAAEAYCQDIPAP------------------LKALLPDYQRmET 95
Cdd:COG1896    27 NVAEHSWHVALIahlladianegVDPERVAKmALLHDLVEIDTGDIPTPvkyaneakkeieraaaerLFGLLPEELR-EE 105

                          90       100
                  ....*....|....*....|....
gi 1601828277  96 YVDGLIRFKFGISLEqAAVVKYAD 119
Cdd:COG1896   106 FRALWDEFEAGETPE-ARFVKAAD 128
 
Name Accession Description Interval E-value
YfbR COG1896
5'-deoxynucleotidase YfbR and related HD superfamily hydrolases [Nucleotide transport and ...
 46-119 6.32e-03

5'-deoxynucleotidase YfbR and related HD superfamily hydrolases [Nucleotide transport and metabolism, General function prediction only];


Pssm-ID: 441500  Cd Length: 162  Bit Score: 35.61  E-value: 6.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1601828277  46 SVAQHSVLVSQI-----------VPPEFAFE-ALMHDAAEAYCQDIPAP------------------LKALLPDYQRmET 95
Cdd:COG1896    27 NVAEHSWHVALIahlladianegVDPERVAKmALLHDLVEIDTGDIPTPvkyaneakkeieraaaerLFGLLPEELR-EE 105

                          90       100
                  ....*....|....*....|....
gi 1601828277  96 YVDGLIRFKFGISLEqAAVVKYAD 119
Cdd:COG1896   106 FRALWDEFEAGETPE-ARFVKAAD 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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