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Conserved domains on  [gi|1603615128|ref|WP_134266391|]
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head-tail adaptor protein [Bacillus cereus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_H_T_join super family cl11461
Phage head-tail joining protein;
27-103 1.66e-03

Phage head-tail joining protein;


The actual alignment was detected with superfamily member COG5614:

Pssm-ID: 472190  Cd Length: 107  Bit Score: 35.30  E-value: 1.66e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1603615128  27 PIEEWKEINTVKGVLDAIQGTKDARNKKVEEKSTHFFYC-MLFDVTIQDRLVIDKKVYSVTYPGDPMNAGRFFQIELE 103
Cdd:COG5614    25 PIETWEDLATVWAEVEPLSGREYFAAGAEQAEVTHRITIrYRPGITPDMRIVYGGRIFNIRAVIDPDGRGRYLEILCE 102
 
Name Accession Description Interval E-value
COG5614 COG5614
Phage head-tail adaptor [Mobilome: prophages, transposons];
27-103 1.66e-03

Phage head-tail adaptor [Mobilome: prophages, transposons];


Pssm-ID: 444345  Cd Length: 107  Bit Score: 35.30  E-value: 1.66e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1603615128  27 PIEEWKEINTVKGVLDAIQGTKDARNKKVEEKSTHFFYC-MLFDVTIQDRLVIDKKVYSVTYPGDPMNAGRFFQIELE 103
Cdd:COG5614    25 PIETWEDLATVWAEVEPLSGREYFAAGAEQAEVTHRITIrYRPGITPDMRIVYGGRIFNIRAVIDPDGRGRYLEILCE 102
 
Name Accession Description Interval E-value
COG5614 COG5614
Phage head-tail adaptor [Mobilome: prophages, transposons];
27-103 1.66e-03

Phage head-tail adaptor [Mobilome: prophages, transposons];


Pssm-ID: 444345  Cd Length: 107  Bit Score: 35.30  E-value: 1.66e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1603615128  27 PIEEWKEINTVKGVLDAIQGTKDARNKKVEEKSTHFFYC-MLFDVTIQDRLVIDKKVYSVTYPGDPMNAGRFFQIELE 103
Cdd:COG5614    25 PIETWEDLATVWAEVEPLSGREYFAAGAEQAEVTHRITIrYRPGITPDMRIVYGGRIFNIRAVIDPDGRGRYLEILCE 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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