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Conserved domains on  [gi|1624566397|ref|WP_136409440|]
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porin family protein [Muribaculum gordoncarteri]

Protein Classification

porin family protein( domain architecture ID 10611987)

porin family protein is a member of a large superfamily consisting of classical (gram-negative ) porins which are non-specific channels for small hydrophillic molecules, maltoporin-like channels which have specificities for various sugars, and ligand-gated protein channels which cooperate with a TonB associated inner membrane complex to actively transport ligands via the proton motive force

CATH:  2.40.160.10
Gene Ontology:  GO:0009279|GO:0015288
PubMed:  31792365|31214985
SCOP:  4003061

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OMP_b-brl_2 pfam13568
Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer ...
 22-223 1.79e-14

Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.


:

Pssm-ID: 433316  Cd Length: 175  Bit Score: 68.97  E-value: 1.79e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566397  22 QAQTLIDYgvpaklFQVGVRAGFNTSNLTTNYDDAFQdikwnhNQWKGGFSAGMVVDINLRNFFSIQPGIFLDTRK---S 98
Cdd:pfam13568   1 FAQSRRRR------LEIGVKGGFNASKLSPEPRNISD------YNPRGGFSVGVIVRYRLNNRWGFQPGLGYSNRGwefE 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566397  99 TYHYLVNSDNVLkaidGQLTGNYIRIPILASLRLGVAELAQVQIDFGPYFAWGFGGANKYTVYGTSDTeptapqvigrdf 178
Cdd:pfam13568  69 FEVETSSGDTYK----TKRTSTYLELPLLAKYRFGKSNNVRLFFQAGPKLGYLLGGKFSGTDSDVTDS------------ 132

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1624566397 179 ksDCFGDKGMVQTYDWGLKMGLGVLVMQHYYIGAHYHFSCRNVLR 223
Cdd:pfam13568 133 --DASYDTDKLRKFDYGLVIGAGLEFFNRLTLELRYYYGLNDIFD 175
 
Name Accession Description Interval E-value
OMP_b-brl_2 pfam13568
Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer ...
 22-223 1.79e-14

Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.


Pssm-ID: 433316  Cd Length: 175  Bit Score: 68.97  E-value: 1.79e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566397  22 QAQTLIDYgvpaklFQVGVRAGFNTSNLTTNYDDAFQdikwnhNQWKGGFSAGMVVDINLRNFFSIQPGIFLDTRK---S 98
Cdd:pfam13568   1 FAQSRRRR------LEIGVKGGFNASKLSPEPRNISD------YNPRGGFSVGVIVRYRLNNRWGFQPGLGYSNRGwefE 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566397  99 TYHYLVNSDNVLkaidGQLTGNYIRIPILASLRLGVAELAQVQIDFGPYFAWGFGGANKYTVYGTSDTeptapqvigrdf 178
Cdd:pfam13568  69 FEVETSSGDTYK----TKRTSTYLELPLLAKYRFGKSNNVRLFFQAGPKLGYLLGGKFSGTDSDVTDS------------ 132

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1624566397 179 ksDCFGDKGMVQTYDWGLKMGLGVLVMQHYYIGAHYHFSCRNVLR 223
Cdd:pfam13568 133 --DASYDTDKLRKFDYGLVIGAGLEFFNRLTLELRYYYGLNDIFD 175
 
Name Accession Description Interval E-value
OMP_b-brl_2 pfam13568
Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer ...
 22-223 1.79e-14

Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.


Pssm-ID: 433316  Cd Length: 175  Bit Score: 68.97  E-value: 1.79e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566397  22 QAQTLIDYgvpaklFQVGVRAGFNTSNLTTNYDDAFQdikwnhNQWKGGFSAGMVVDINLRNFFSIQPGIFLDTRK---S 98
Cdd:pfam13568   1 FAQSRRRR------LEIGVKGGFNASKLSPEPRNISD------YNPRGGFSVGVIVRYRLNNRWGFQPGLGYSNRGwefE 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566397  99 TYHYLVNSDNVLkaidGQLTGNYIRIPILASLRLGVAELAQVQIDFGPYFAWGFGGANKYTVYGTSDTeptapqvigrdf 178
Cdd:pfam13568  69 FEVETSSGDTYK----TKRTSTYLELPLLAKYRFGKSNNVRLFFQAGPKLGYLLGGKFSGTDSDVTDS------------ 132

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1624566397 179 ksDCFGDKGMVQTYDWGLKMGLGVLVMQHYYIGAHYHFSCRNVLR 223
Cdd:pfam13568 133 --DASYDTDKLRKFDYGLVIGAGLEFFNRLTLELRYYYGLNDIFD 175
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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