|
Name |
Accession |
Description |
Interval |
E-value |
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
6-319 |
2.73e-180 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 499.55 E-value: 2.73e-180
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 6 FFSKekketLDKGLERTKQGVFSKIARAIAGKSKIDDEILDNLEEVFITSDVGVETTLKIIDRIEHRVSRDKYVNSSELN 85
Cdd:COG0552 1 FFER-----LKEGLSKTRSGLGEKLKSLFSGKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 86 NLLCEEITELLAENnnDSTLEdftvPQGHKPHVIMVVGVNGVGKTTTIGKLAYQFKKAGNKVMLGAADTFRAAAVEQLDI 165
Cdd:COG0552 76 EALKEELLEILDPV--DKPLA----IEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEV 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 166 WGERAGVPVVKQKLGADPASVAFDTLQSAKANDIDVVIIDTAGRLHNKKGLMDELTKIKNVMQKVVPDAPHEVLLVLDGS 245
Cdd:COG0552 150 WGERVGVPVIAQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAPHEVLLVLDAT 229
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1624566962 246 TGQNAFEQAKQFVAATKVNELAITKLDGTAKGGVVIGISDQFRIPVKYIGLGEGIDDLQVFHKKEFVQSLFGNN 319
Cdd:COG0552 230 TGQNALSQAKVFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFGEE 303
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
3-317 |
6.97e-178 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 494.23 E-value: 6.97e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 3 IFSFFSKEKKET-------LDKGLERTKQGVFSKIARAIAGKsKIDDEILDNLEEVFITSDVGVETTLKIIDRIEHRVSR 75
Cdd:PRK10416 1 FFSWLKKKKKEKkegwferLKKGLSKTRENFGEGINGLFAKK-KIDEDLLEELEELLIEADVGVETTEEIIEELRERVKR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 76 DKYVNSSELNNLLCEEITELLAENNNDSTLEDftvpqgHKPHVIMVVGVNGVGKTTTIGKLAYQFKKAGNKVMLGAADTF 155
Cdd:PRK10416 80 KNLKDPEELKELLKEELAEILEPVEKPLNIEE------KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 156 RAAAVEQLDIWGERAGVPVVKQKLGADPASVAFDTLQSAKANDIDVVIIDTAGRLHNKKGLMDELTKIKNVMQKVVPDAP 235
Cdd:PRK10416 154 RAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAP 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 236 HEVLLVLDGSTGQNAFEQAKQFVAATKVNELAITKLDGTAKGGVVIGISDQFRIPVKYIGLGEGIDDLQVFHKKEFVQSL 315
Cdd:PRK10416 234 HEVLLVLDATTGQNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDAL 313
|
..
gi 1624566962 316 FG 317
Cdd:PRK10416 314 LG 315
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
39-316 |
2.27e-124 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 357.34 E-value: 2.27e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 39 KIDDEILDNLEEVFITSDVGVETTLKIIDRIEHRVSRDKYVNSSELNNLLCEEITELLAENNNDSTLEDFTvPQGHKPHV 118
Cdd:TIGR00064 1 KDDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNTDLELI-VEENKPNV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 119 IMVVGVNGVGKTTTIGKLAYQFKKAGNKVMLGAADTFRAAAVEQLDIWGERAGVPVVKQKLGADPASVAFDTLQSAKAND 198
Cdd:TIGR00064 80 ILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARN 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 199 IDVVIIDTAGRLHNKKGLMDELTKIKNVMQKVVPDAPHEVLLVLDGSTGQNAFEQAKQFVAATKVNELAITKLDGTAKGG 278
Cdd:TIGR00064 160 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGG 239
|
250 260 270
....*....|....*....|....*....|....*...
gi 1624566962 279 VVIGISDQFRIPVKYIGLGEGIDDLQVFHKKEFVQSLF 316
Cdd:TIGR00064 240 IILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
118-315 |
1.75e-109 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 316.44 E-value: 1.75e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 118 VIMVVGVNGVGKTTTIGKLAYQFKKAGNKVMLGAADTFRAAAVEQLDIWGERAGVPVVKQKLGADPASVAFDTLQSAKAN 197
Cdd:cd17874 2 VILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 198 DIDVVIIDTAGRLHNKKGLMDELTKIKNVMQKVVPDAPHEVLLVLDGSTGQNAFEQAKQFVAATKVNELAITKLDGTAKG 277
Cdd:cd17874 82 GIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAKG 161
|
170 180 190
....*....|....*....|....*....|....*...
gi 1624566962 278 GVVIGISDQFRIPVKYIGLGEGIDDLQVFHKKEFVQSL 315
Cdd:cd17874 162 GIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
116-317 |
5.57e-101 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 294.70 E-value: 5.57e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 116 PHVIMVVGVNGVGKTTTIGKLAYQFKKAGN-KVMLGAADTFRAAAVEQLDIWGERAGVPVVKQKLGADPASVAFDTLQSA 194
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGkKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 195 KANDIDVVIIDTAGRLHNKKGLMDELTKIKNVMQkvvpdaPHEVLLVLDGSTGQNAFEQAKQFVAATKVNELAITKLDGT 274
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIK------PDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGT 154
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1624566962 275 AKGGVVIGISDQFRIPVKYIGLGEGIDDLQVFHKKEFVQSLFG 317
Cdd:smart00962 155 AKGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
118-315 |
7.61e-97 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 284.05 E-value: 7.61e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 118 VIMVVGVNGVGKTTTIGKLAYQFKKAGNKVMLGAADTFRAAAVEQLDIWGERAGVPVVKQKLGADPASVAFDTLQSAKAN 197
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKAE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 198 DIDVVIIDTAGRLHNKKGLMDELTKIKNVMqkvvpdAPHEVLLVLDGSTGQNAFEQAKQFVAATKVNELAITKLDGTAKG 277
Cdd:pfam00448 82 NYDVVLVDTAGRLQNDKNLMDELKKIKRVV------APDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKG 155
|
170 180 190
....*....|....*....|....*....|....*...
gi 1624566962 278 GVVIGISDQFRIPVKYIGLGEGIDDLQVFHKKEFVQSL 315
Cdd:pfam00448 156 GAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| ParA_partition |
NF041546 |
ParA family partition ATPase; |
126-210 |
5.38e-05 |
|
ParA family partition ATPase;
Pssm-ID: 469431 [Multi-domain] Cd Length: 202 Bit Score: 43.31 E-value: 5.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 126 GVGKTTTIGKLAYQFKKAGNKVML------GAADTFRAAAveqldiwGERAGVPVVkqklGADPASVAfDTLQSAkANDI 199
Cdd:NF041546 10 GVGKTTLATHLAAALARRGYRVLLvdadpqGSALDWAAAR-------EDERPFPVV----GLARPTLH-RELPSL-ARDY 76
|
90
....*....|.
gi 1624566962 200 DVVIIDTAGRL 210
Cdd:NF041546 77 DFVVIDGPPRA 87
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
6-319 |
2.73e-180 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 499.55 E-value: 2.73e-180
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 6 FFSKekketLDKGLERTKQGVFSKIARAIAGKSKIDDEILDNLEEVFITSDVGVETTLKIIDRIEHRVSRDKYVNSSELN 85
Cdd:COG0552 1 FFER-----LKEGLSKTRSGLGEKLKSLFSGKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 86 NLLCEEITELLAENnnDSTLEdftvPQGHKPHVIMVVGVNGVGKTTTIGKLAYQFKKAGNKVMLGAADTFRAAAVEQLDI 165
Cdd:COG0552 76 EALKEELLEILDPV--DKPLA----IEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEV 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 166 WGERAGVPVVKQKLGADPASVAFDTLQSAKANDIDVVIIDTAGRLHNKKGLMDELTKIKNVMQKVVPDAPHEVLLVLDGS 245
Cdd:COG0552 150 WGERVGVPVIAQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAPHEVLLVLDAT 229
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1624566962 246 TGQNAFEQAKQFVAATKVNELAITKLDGTAKGGVVIGISDQFRIPVKYIGLGEGIDDLQVFHKKEFVQSLFGNN 319
Cdd:COG0552 230 TGQNALSQAKVFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFGEE 303
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
3-317 |
6.97e-178 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 494.23 E-value: 6.97e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 3 IFSFFSKEKKET-------LDKGLERTKQGVFSKIARAIAGKsKIDDEILDNLEEVFITSDVGVETTLKIIDRIEHRVSR 75
Cdd:PRK10416 1 FFSWLKKKKKEKkegwferLKKGLSKTRENFGEGINGLFAKK-KIDEDLLEELEELLIEADVGVETTEEIIEELRERVKR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 76 DKYVNSSELNNLLCEEITELLAENNNDSTLEDftvpqgHKPHVIMVVGVNGVGKTTTIGKLAYQFKKAGNKVMLGAADTF 155
Cdd:PRK10416 80 KNLKDPEELKELLKEELAEILEPVEKPLNIEE------KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 156 RAAAVEQLDIWGERAGVPVVKQKLGADPASVAFDTLQSAKANDIDVVIIDTAGRLHNKKGLMDELTKIKNVMQKVVPDAP 235
Cdd:PRK10416 154 RAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAP 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 236 HEVLLVLDGSTGQNAFEQAKQFVAATKVNELAITKLDGTAKGGVVIGISDQFRIPVKYIGLGEGIDDLQVFHKKEFVQSL 315
Cdd:PRK10416 234 HEVLLVLDATTGQNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDAL 313
|
..
gi 1624566962 316 FG 317
Cdd:PRK10416 314 LG 315
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
39-316 |
2.27e-124 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 357.34 E-value: 2.27e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 39 KIDDEILDNLEEVFITSDVGVETTLKIIDRIEHRVSRDKYVNSSELNNLLCEEITELLAENNNDSTLEDFTvPQGHKPHV 118
Cdd:TIGR00064 1 KDDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNTDLELI-VEENKPNV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 119 IMVVGVNGVGKTTTIGKLAYQFKKAGNKVMLGAADTFRAAAVEQLDIWGERAGVPVVKQKLGADPASVAFDTLQSAKAND 198
Cdd:TIGR00064 80 ILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARN 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 199 IDVVIIDTAGRLHNKKGLMDELTKIKNVMQKVVPDAPHEVLLVLDGSTGQNAFEQAKQFVAATKVNELAITKLDGTAKGG 278
Cdd:TIGR00064 160 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGG 239
|
250 260 270
....*....|....*....|....*....|....*...
gi 1624566962 279 VVIGISDQFRIPVKYIGLGEGIDDLQVFHKKEFVQSLF 316
Cdd:TIGR00064 240 IILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
118-315 |
1.75e-109 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 316.44 E-value: 1.75e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 118 VIMVVGVNGVGKTTTIGKLAYQFKKAGNKVMLGAADTFRAAAVEQLDIWGERAGVPVVKQKLGADPASVAFDTLQSAKAN 197
Cdd:cd17874 2 VILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 198 DIDVVIIDTAGRLHNKKGLMDELTKIKNVMQKVVPDAPHEVLLVLDGSTGQNAFEQAKQFVAATKVNELAITKLDGTAKG 277
Cdd:cd17874 82 GIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAKG 161
|
170 180 190
....*....|....*....|....*....|....*...
gi 1624566962 278 GVVIGISDQFRIPVKYIGLGEGIDDLQVFHKKEFVQSL 315
Cdd:cd17874 162 GIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
116-317 |
5.57e-101 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 294.70 E-value: 5.57e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 116 PHVIMVVGVNGVGKTTTIGKLAYQFKKAGN-KVMLGAADTFRAAAVEQLDIWGERAGVPVVKQKLGADPASVAFDTLQSA 194
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGkKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 195 KANDIDVVIIDTAGRLHNKKGLMDELTKIKNVMQkvvpdaPHEVLLVLDGSTGQNAFEQAKQFVAATKVNELAITKLDGT 274
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIK------PDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGT 154
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1624566962 275 AKGGVVIGISDQFRIPVKYIGLGEGIDDLQVFHKKEFVQSLFG 317
Cdd:smart00962 155 AKGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
118-315 |
7.61e-97 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 284.05 E-value: 7.61e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 118 VIMVVGVNGVGKTTTIGKLAYQFKKAGNKVMLGAADTFRAAAVEQLDIWGERAGVPVVKQKLGADPASVAFDTLQSAKAN 197
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKAE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 198 DIDVVIIDTAGRLHNKKGLMDELTKIKNVMqkvvpdAPHEVLLVLDGSTGQNAFEQAKQFVAATKVNELAITKLDGTAKG 277
Cdd:pfam00448 82 NYDVVLVDTAGRLQNDKNLMDELKKIKRVV------APDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKG 155
|
170 180 190
....*....|....*....|....*....|....*...
gi 1624566962 278 GVVIGISDQFRIPVKYIGLGEGIDDLQVFHKKEFVQSL 315
Cdd:pfam00448 156 GAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
9-317 |
9.12e-87 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 263.76 E-value: 9.12e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 9 KEKKETLDKGLERTKQGVFSKIARAIAGKSKIDDeILDNLEEVFITSDVGVETTLKIIDRIEHRVS----RDKYVNSSEL 84
Cdd:PRK14974 32 EEEEEEEDEEEKKEKPGFFDKAKITEIKEKDIED-LLEELELELLESDVALEVAEEILESLKEKLVgkkvKRGEDVEEIV 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 85 NNLLCEEITELLAENNNDSTLEdfTVPQGHKPHVIMVVGVNGVGKTTTIGKLAYQFKKAGNKVMLGAADTFRAAAVEQLD 164
Cdd:PRK14974 111 KNALKEALLEVLSVGDLFDLIE--EIKSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLE 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 165 IWGERAGVPVVKQKLGADPASVAFDTLQSAKANDIDVVIIDTAGRLHNKKGLMDELTKIKNVMQkvvpdaPHEVLLVLDG 244
Cdd:PRK14974 189 EHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTK------PDLVIFVGDA 262
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1624566962 245 STGQNAFEQAKQFVAATKVNELAITKLDGTAKGGVVIGISDQFRIPVKYIGLGEGIDDLQVFHKKEFVQSLFG 317
Cdd:PRK14974 263 LAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
118-315 |
4.79e-78 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 236.50 E-value: 4.79e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 118 VIMVVGVNGVGKTTTIGKLAYQFKKAGNKVMLGAADTFRAAAVEQLDIWGERAGVPVVKQKLGADPASVAFDTLQSAKAN 197
Cdd:cd03115 2 VILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 198 DIDVVIIDTAGRLHNKKGLMDELTKIKNVMQkvvpdaPHEVLLVLDGSTGQNAFEQAKQFVAATKVNELAITKLDGTAKG 277
Cdd:cd03115 82 GYDVLLVDTAGRLQKDEPLMEELKKVKEVES------PDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKG 155
|
170 180 190
....*....|....*....|....*....|....*...
gi 1624566962 278 GVVIGISDQFRIPVKYIGLGEGIDDLQVFHKKEFVQSL 315
Cdd:cd03115 156 GAALSIVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
27-317 |
3.22e-72 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 229.71 E-value: 3.22e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 27 FSKIARAIAGKSKID----DEILDNLEEVFITSDVGVETTLKIIDRIEHR---------VSRDKYVNSselnnLLCEEIT 93
Cdd:PRK00771 5 LRDALKKLAGKSRIDektvKEVVKDIQRALLQADVNVKLVKELSKSIKERaleeeppkgLTPREHVIK-----IVYEELV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 94 ELLAENNNDSTLEdftvpqgHKPHVIMVVGVNGVGKTTTIGKLAYQFKKAGNKVMLGAADTFRAAAVEQLDIWGERAGVP 173
Cdd:PRK00771 80 KLLGEETEPLVLP-------LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVP 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 174 VVKQKLGADPASVAFDTLQSAKanDIDVVIIDTAGRLHNKKGLMDELTKIKNVMQkvvpdaPHEVLLVLDGSTGQNAFEQ 253
Cdd:PRK00771 153 FYGDPDNKDAVEIAKEGLEKFK--KADVIIVDTAGRHALEEDLIEEMKEIKEAVK------PDEVLLVIDATIGQQAKNQ 224
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1624566962 254 AKQFVAATKVNELAITKLDGTAKGGVVIGISDQFRIPVKYIGLGEGIDDLQVFHKKEFVQSLFG 317
Cdd:PRK00771 225 AKAFHEAVGIGGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLG 288
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
13-307 |
1.66e-71 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 227.21 E-value: 1.66e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 13 ETLDKGLertkQGVFSKIAraiaGKSKIDDE-ILDNLEEV---FITSDVGVETTLKIIDRIEHRvSRDKYVNSSeLN--- 85
Cdd:COG0541 3 ENLSERL----QGAFKKLR----GKGRLTEEnIKEALREVrraLLEADVNLKVVKDFIERVKER-ALGEEVLKS-LTpgq 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 86 ---NLLCEEITELLAENNNDSTLEdftvpqGHKPHVIMVVGVNGVGKTTTIGKLAYQFKKAGNKVMLGAADTFRAAAVEQ 162
Cdd:COG0541 73 qviKIVHDELVELLGGENEELNLA------KKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 163 LDIWGERAGVPVVKQKLGADPASVAFDTLQSAKANDIDVVIIDTAGRLHNKKGLMDELTKIKNVMQkvvpdaPHEVLLVL 242
Cdd:COG0541 147 LKTLGEQIGVPVFPEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVN------PDETLLVV 220
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1624566962 243 DGSTGQNAFEQAKQFVAATKVNELAITKLDGTAKGGVVIGISDQFRIPVKYIGLGEGIDDLQVFH 307
Cdd:COG0541 221 DAMTGQDAVNVAKAFNEALGLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFH 285
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
118-307 |
2.34e-67 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 208.99 E-value: 2.34e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 118 VIMVVGVNGVGKTTTIGKLAYQFKKAGNKVMLGAADTFRAAAVEQLDIWGERAGVPVVKQKLGADPASVAFDTLQSAKAN 197
Cdd:cd18539 2 VILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 198 DIDVVIIDTAGRLHNKKGLMDELTKIKNVMQkvvpdaPHEVLLVLDGSTGQNAFEQAKQFVAATKVNELAITKLDGTAKG 277
Cdd:cd18539 82 GFDVVIVDTAGRLHIDEELMDELKEIKEVLN------PDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARG 155
|
170 180 190
....*....|....*....|....*....|
gi 1624566962 278 GVVIGISDQFRIPVKYIGLGEGIDDLQVFH 307
Cdd:cd18539 156 GAALSIRHVTGKPIKFIGVGEKIEDLEPFH 185
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
118-315 |
1.41e-58 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 186.63 E-value: 1.41e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 118 VIMVVGVNGVGKTTTIGKLAYQFKKAGNKVMLGAADTFRAAAVEQLDIWGERAGVPVVKQKLGADPASVAFDTLQSAKAN 197
Cdd:cd17875 2 VIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKKE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 198 DIDVVIIDTAGRLHNKKGLMDELTKIKNVMQkvvpdaPHEVLLVLDGSTGQNAFEQAKQFVAATKVNELAITKLDGTAKG 277
Cdd:cd17875 82 KFDIIIVDTSGRHKQEEELFEEMKQISDAVK------PDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKG 155
|
170 180 190
....*....|....*....|....*....|....*...
gi 1624566962 278 GVVIGISDQFRIPVKYIGLGEGIDDLQVFHKKEFVQSL 315
Cdd:cd17875 156 GGALSAVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
19-317 |
2.14e-52 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 177.72 E-value: 2.14e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 19 LERTKQGVFSKIARAIAGKSKIDDEILDNLEEVFITSDVGVETTLKIIDRIEHRVSRDKYVNSSELNNLLCEEITELLAe 98
Cdd:TIGR01425 5 LGSSLVTALRSMSSATVIDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFEELC- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 99 NNNDSTLEDFTvPQGHKPHVIMVVGVNGVGKTTTIGKLAYQFKKAGNKVMLGAADTFRAAAVEQLDIWGERAGVPVVKQK 178
Cdd:TIGR01425 84 NLVDPGVEAFT-PKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYGSY 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 179 LGADPASVAFDTLQSAKANDIDVVIIDTAGRLHNKKGLMDELTKIKNVMQkvvpdaPHEVLLVLDGSTGQNAFEQAKQFV 258
Cdd:TIGR01425 163 EESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIK------PDSIIFVMDGSIGQAAFGQAKAFK 236
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1624566962 259 AATKVNELAITKLDGTAKGGVVIGISDQFRIPVKYIGLGEGIDDLQVFHKKEFVQSLFG 317
Cdd:TIGR01425 237 DSVEVGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLG 295
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
118-315 |
4.71e-42 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 144.29 E-value: 4.71e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 118 VIMVVGVNGVGKTTTIGKLAYQFKKAGNKVMLGAADTFRAAAVEQLDIWGERAGVPVVKQKLGADPASVAFDTLQSAKAN 197
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARDQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 198 DIDVVIIDTAGRLHNKKGLMDELTKIKNVMQkvvPDApheVLLVLDGSTGQNAFEQAKQFVAATK----------VNELA 267
Cdd:cd17876 82 GFDVVLIDTAGRMQNNEPLMRALAKLIKENN---PDL---VLFVGEALVGNDAVDQLKKFNQALAdyspsdnprlIDGIV 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1624566962 268 ITKLDGTA-KGGVVIGISDQFRIPVKYIGLGEGIDDLQVFHKKEFVQSL 315
Cdd:cd17876 156 LTKFDTIDdKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVNSL 204
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
24-317 |
6.26e-40 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 143.47 E-value: 6.26e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 24 QGVFSKIARAIAGKSKIDDEILDNLEEVFITSDVGVETTLKIIDRIEHRVSRDkyvnssELNNLLCEEITELLAENNNds 103
Cdd:COG1419 87 KELLEEQLSGLAGESARLPPELAELLERLLEAGVSPELARELLEKLPEDLSAE------EAWRALLEALARRLPVAED-- 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 104 tledftvPQGHKPHVIMVVGVNGVGKTTTIGKLAYQFKKAGN-KVMLGAADTFRAAAVEQLDIWGERAGVPVvkqklgad 182
Cdd:COG1419 159 -------PLLDEGGVIALVGPTGVGKTTTIAKLAARFVLRGKkKVALITTDTYRIGAVEQLKTYARILGVPV-------- 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 183 paSVAFDT--LQSA--KANDIDVVIIDTAGRLHNKKGLMDELTKIKNVMQKVvpdaphEVLLVLD-GSTGQNAFEQAKQF 257
Cdd:COG1419 224 --EVAYDPeeLKEAleRLRDKDLVLIDTAGRSPRDPELIEELKALLDAGPPI------EVYLVLSaTTKYEDLKEIVEAF 295
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1624566962 258 vAATKVNELAITKLDGTAKGGVVIGISDQFRIPVKYIGLGEGI-DDLQVFHKKEFVQSLFG 317
Cdd:COG1419 296 -SSLGLDGLILTKLDETASLGSILNLLIRTGLPLSYITNGQRVpEDIEVADPERLARLLLG 355
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
117-315 |
5.30e-35 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 125.74 E-value: 5.30e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 117 HVIMVVGVNGVGKTTTIGKLAYQFK-KAGNKVMLGAADTFRAAAVEQLDIWGERAGVPVVKQKLGADpasvafdtLQSAK 195
Cdd:cd17873 1 RVIALVGPTGVGKTTTLAKLAARYVlKKGKKVALITTDTYRIGAVEQLKTYAEIMGIPVEVAEDPED--------LADAL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 196 AN--DIDVVIIDTAGRLHNKKGLMDELTKIKNVMQKVvpdaphEVLLVLD-GSTGQNAFEQAKQFvAATKVNELAITKLD 272
Cdd:cd17873 73 ERlsDRDLILIDTAGRSPRDKEQLEELKELLGAGEDI------EVHLVLSaTTKAKDLKEIIERF-SPLGYRGLILTKLD 145
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1624566962 273 GTAKGGVVIGISDQFRIPVKYIGLGEGI-DDLQVFHKKEFVQSL 315
Cdd:cd17873 146 ETTSLGSVLSVLAESQLPVSYVTTGQRVpEDIEVASPLRLARLL 189
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
82-317 |
9.63e-27 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 108.83 E-value: 9.63e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 82 SELNNLLCEEITELLAENNNDS------------------TLEDFTVPQGhkphVIMVVGVNGVGKTTTIGKLA--YQFK 141
Cdd:PRK05703 173 SGLSPEIAEKLLKLLLEHMPPRertawryllellanmipvRVEDILKQGG----VVALVGPTGVGKTTTLAKLAarYALL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 142 KAGNKVMLGAADTFRAAAVEQLDIWGERAGVPVvkqklgadpaSVAFD--TLQSAKA--NDIDVVIIDTAGRLHNKKGLM 217
Cdd:PRK05703 249 YGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV----------EVVYDpkELAKALEqlRDCDVILIDTAGRSQRDKRLI 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 218 DELtkiKNVMQKVvpDAPHEVLLVLdGSTGQN--AFEQAKQFvAATKVNELAITKLDGTAKGGVVIGISDQFRIPVKYIG 295
Cdd:PRK05703 319 EEL---KALIEFS--GEPIDVYLVL-SATTKYedLKDIYKHF-SRLPLDGLIFTKLDETSSLGSILSLLIESGLPISYLT 391
|
250 260
....*....|....*....|...
gi 1624566962 296 LGEGI-DDLQVFHKKEFVQSLFG 317
Cdd:PRK05703 392 NGQRVpDDIKVANPEELVRLLLG 414
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
36-208 |
3.12e-19 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 85.85 E-value: 3.12e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 36 GKSKIDDEILDNLEEVFITSDVGVETTLKIIDRIehrvsrDKYVNSSELNNLLCEEITELLAENNNDSTLEDftvpqghK 115
Cdd:TIGR03499 127 LAWLQRPPERAKLYERLLEAGVSEELARELLEKL------PEDADAEDAWRWLREALEGMLPVKPEEDPILE-------Q 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 116 PHVIMVVGVNGVGKTTTIGKLA--YQFKKAGNKVMLGAADTFRAAAVEQLDIWGERAGVPVvkqKLGADPASvafdtLQS 193
Cdd:TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAarFALEHGKKKVALITTDTYRIGAVEQLKTYAEILGIPV---KVARDPKE-----LRE 265
|
170
....*....|....*..
gi 1624566962 194 AKA--NDIDVVIIDTAG 208
Cdd:TIGR03499 266 ALDrlRDKDLILIDTAG 282
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
106-316 |
3.95e-17 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 82.16 E-value: 3.95e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 106 EDFTVPQGHkphVIMVVGVNGVGKTTTIGKLA--YQFKKAGNKVMLGAADTFRAAAVEQLDIWGERAGVPVVKQKLGADp 183
Cdd:PRK14723 178 EDALLAQGG---VLALVGPTGVGKTTTTAKLAarCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAAD- 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 184 asvAFDTLQSAKanDIDVVIIDTAGRLHNKKGLMDELTKIKNVmqkvvpDAPHEVLLVLDG-STGQ--NAFEQAKQFVAA 260
Cdd:PRK14723 254 ---LRFALAALG--DKHLVLIDTVGMSQRDRNVSEQIAMLCGV------GRPVRRLLLLNAaSHGDtlNEVVHAYRHGAG 322
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1624566962 261 TKVNELAITKLDGTAKGGVVIGISDQFRIPVKYIGLGEGI-DDLQVFHKKEFVQSLF 316
Cdd:PRK14723 323 EDVDGCIITKLDEATHLGPALDTVIRHRLPVHYVSTGQKVpEHLELAQADELVDRAF 379
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
118-303 |
4.89e-16 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 78.49 E-value: 4.89e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 118 VIMVVGVNGVGKTTTIGKLAYQF--KKAGNKVMLGAADTFRAAAVEQLDIWGERAGVPVVKqklgADPASVAFDTLQSAK 195
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFaaQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHE----ADSAESLLDLLERLR 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 196 anDIDVVIIDTAGRLHNKKGLMDELTKIKNVMQKvvpdaphEVLLVLDGSTGQNAFEQAKQFVAATKVNELAITKLDGTA 275
Cdd:PRK12727 428 --DYKLVLIDTAGMGQRDRALAAQLNWLRAARQV-------TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETG 498
|
170 180
....*....|....*....|....*....
gi 1624566962 276 KGGVVIGISDQFRIPVKYIGLGEGI-DDL 303
Cdd:PRK12727 499 RFGSALSVVVDHQMPITWVTDGQRVpDDL 527
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
118-316 |
2.71e-14 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 72.83 E-value: 2.71e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 118 VIMVVGVNGVGKTTTIGKLAYQ--FKKAGNKVMLGAADTFRAAAVEQLDIWGERAGVPVVKQKLGADPasvafdTLQSAK 195
Cdd:PRK14722 139 VFALMGPTGVGKTTTTAKLAARcvMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDL------QLALAE 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 196 ANDIDVVIIDTAGRLHNKKGLMDELTKIKNVmqkvvpDAPHEVLLVLDGST-GQNAFEQAKQFVAATKVNELA------- 267
Cdd:PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGA------DTPVQRLLLLNATShGDTLNEVVQAYRSAAGQPKAAlpdlagc 286
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1624566962 268 -ITKLDGTAKGGVVIGISDQFRIPVKYIGLGEGI-DDLQVFHKKEFVQSLF 316
Cdd:PRK14722 287 iLTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVpENLYVATKKFLLKSAF 337
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
105-309 |
1.19e-12 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 67.84 E-value: 1.19e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 105 LEDFTVPQGHKphVIMVVGVNGVGKTTTIGKLAYQFKKAGNKVMLGAADTFRAAAVEQLDIWGERAGVPVVkqkLGADPA 184
Cdd:PRK12726 197 VEDSFDLSNHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI---VATSPA 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 185 SVAFDTLQSAKANDIDVVIIDTAGRLHNKKGLMDELTKIKNVMqkvvpdapHEVLLVLDGSTGQNAFEQAKQF--VAATK 262
Cdd:PRK12726 272 ELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVV--------HPDLTCFTFSSGMKSADVMTILpkLAEIP 343
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1624566962 263 VNELAITKLDGTAKGGVVIGISDQFRIPVKYIGLGEGIDDlQVFHKK 309
Cdd:PRK12726 344 IDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDGQNITE-NIFRPK 389
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
115-220 |
3.48e-12 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 63.16 E-value: 3.48e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 115 KPHVIMVVGVNGVGKTTTIGKLAYQFKKAGNKVMLGAADTFRAAAVEQLDiwgeraGVPVVKQKLGADPASVAFDTLQSA 194
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALA 74
|
90 100
....*....|....*....|....*.
gi 1624566962 195 KANDIDVVIIDTAGRLHNKKGLMDEL 220
Cdd:smart00382 75 RKLKPDVLILDEITSLLDAEQEALLL 100
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
23-96 |
2.52e-11 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 58.72 E-value: 2.52e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1624566962 23 KQGVFSKIARAIAGKSKIDDEILDNLEEVFITSDVGVETTLKIIDRIEHRVSRD---KYVNSSELNNLLCEEITELL 96
Cdd:smart00963 1 LSKALGKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKGEvlkGLTPKQEVKKILKEELVKIL 77
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
27-300 |
1.87e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 61.52 E-value: 1.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 27 FSKIARAIAGKSKidDEILDNLEEVFITSDVGVETTLKIIDRIEHRVSRdkyVNSSELNNLLCEEITELLAENNNDSTLE 106
Cdd:PRK12724 141 FLESETTIVRKEK--DSPLQRLGERLVREGMSQSYVEEMASKLEERLSP---VDQGRNHNVTERAVTYLEERVSVDSDLF 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 107 DFTvPQGHKpHVIMVVGVNGVGKTTTIGKLAYQ-FKKAGNKVMLGAADTFRAAAVEQLDIWGERAGVPVVKQKlgadpas 185
Cdd:PRK12724 216 SGT-GKNQR-KVVFFVGPTGSGKTTSIAKLAAKyFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVK------- 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 186 vAFDTLQSAKAND-IDVVIIDTAGRLHNKkglMDELTKIKNVMQKVVPDAPHEVLLVLDGSTGQNAFEQAKQFVAATKVN 264
Cdd:PRK12724 287 -DIKKFKETLARDgSELILIDTAGYSHRN---LEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYR 362
|
250 260 270
....*....|....*....|....*....|....*.
gi 1624566962 265 ELAITKLDGTAKGGVVIGISDQFRIPVKYIGLGEGI 300
Cdd:PRK12724 363 RILLTKLDEADFLGSFLELADTYSKSFTYLSVGQEV 398
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
115-317 |
4.09e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 60.30 E-value: 4.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 115 KPHVIMVVGVNGVGKTTTIGKLAYQF----KKAGNKVMLGAADTFRAAAVEQLDIWGERAGVPVvkqklgadPASVAFDT 190
Cdd:PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYginsDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV--------KAIESFKD 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 191 LQS--AKANDIDVVIIDTAGRlhNKKGLMdELTKIKNVMQKVVPDAphEVLLVLDGSTG----QNAFEQAKQFVAATKVn 264
Cdd:PRK12723 245 LKEeiTQSKDFDLVLVDTIGK--SPKDFM-KLAEMKELLNACGRDA--EFHLAVSSTTKtsdvKEIFHQFSPFSYKTVI- 318
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1624566962 265 elaITKLDGTAKGGVVIGISDQFRIPVKYIGLGEGI-DDLQVFHKKEFVQSLFG 317
Cdd:PRK12723 319 ---FTKLDETTCVGNLISLIYEMRKEVSYVTDGQIVpHNISIAEPLTFIKKING 369
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
118-316 |
3.45e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 57.65 E-value: 3.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 118 VIMVVGVNGVGKTTTIGKLAYQ--FKKAGNKVMLGAADTFRAAAVEQLDIWGERAGVPVVKQKLGADpASVAFDTLQSAK 195
Cdd:PRK14721 193 VYALIGPTGVGKTTTTAKLAARavIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIAD-LQLMLHELRGKH 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 196 andidVVIIDTAGRLHNKKGLMDELTKIKNVMQKVvpdaphEVLLVLDG-STGQNAFEQAKQFVAATkVNELAITKLDGT 274
Cdd:PRK14721 272 -----MVLIDTVGMSQRDQMLAEQIAMLSQCGTQV------KHLLLLNAtSSGDTLDEVISAYQGHG-IHGCIITKVDEA 339
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1624566962 275 AKGGVVIGISDQFRIPVKYIGLGEGI-DDLQVFHKKEFVQSLF 316
Cdd:PRK14721 340 ASLGIALDAVIRRKLVLHYVTNGQKVpEDLHEANSRYLLHRIF 382
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
27-92 |
7.21e-09 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 51.70 E-value: 7.21e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1624566962 27 FSKIARAIAGKSKID----DEILDNLEEVFITSDVGVETTLKIIDRI-EHRVSRDKYVNSSELNNLLCEEI 92
Cdd:pfam02881 5 LSSLFKGLRGKGKIDeedlEEALKELEEALLEADVGVEVVKKIIERLrEKAVGEKKLKPPQEVKKILKEEL 75
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
77-300 |
1.02e-08 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 55.14 E-value: 1.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 77 KYVNSSELNNLLCEEITELLAENNNDSTLEDFTVpqghkpHVIMVVGVNGVGKTTTIGKLAYQFKKAGNKVMLGAADTFR 156
Cdd:PRK06731 42 KFENATMITEEVIEYILEDMSSHFNTENVFEKEV------QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 157 AAAVEQLDIWGERAGVPVVKQKlgaDPASVAFDTLQSAKANDIDVVIIDTAGRLHNKKGLMDELTKiknVMQKVVPDAph 236
Cdd:PRK06731 116 IGTVQQLQDYVKTIGFEVIAVR---DEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIE---TMGQVEPDY-- 187
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1624566962 237 eVLLVLDGSTGQNAFEQAKQFVAATKVNELAITKLDGTAKGGVVIGISDQFRIPVKYIGLGEGI 300
Cdd:PRK06731 188 -ICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 250
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
117-300 |
1.08e-08 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 55.84 E-value: 1.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 117 HVIMVVGVNGVGKTTTIGKLAYQFKKAGNKVMLGAADTFRAAAVEQLDIWGERAGVPVVKQKlgaDPASVAFDTLQSAKA 196
Cdd:PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAMTRALTYFKEE 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 197 NDIDVVIIDTAGRLHNKKGLMDELTKiknVMQKVVPDApheVLLVLDGS-TGQNAFEQAKQFvAATKVNELAITKLDGTA 275
Cdd:PRK11889 319 ARVDYILIDTAGKNYRASETVEEMIE---TMGQVEPDY---ICLTLSASmKSKDMIEIITNF-KDIHIDGIVFTKFDETA 391
|
170 180
....*....|....*....|....*
gi 1624566962 276 KGGVVIGISDQFRIPVKYIGLGEGI 300
Cdd:PRK11889 392 SSGELLKIPAVSSAPIVLMTDGQDV 416
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
122-316 |
1.31e-08 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 55.74 E-value: 1.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 122 VGVNGVGKTTTIGKLAYQF--KKAGNKVMLGAADTFRAAAVEQLDIWGERAGVPVVKQKLGADpASVAFDTLQSAKandi 199
Cdd:PRK06995 262 MGPTGVGKTTTTAKLAARCvmRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAAD-LRLALSELRNKH---- 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 200 dVVIIDTAGRLHNKKGLMDELTKIKNVMQKVvpdaphEVLLVLDG-STGqnafEQAKQFVAATKVNELA---ITKLDGTA 275
Cdd:PRK06995 337 -IVLIDTIGMSQRDRMVSEQIAMLHGAGAPV------KRLLLLNAtSHG----DTLNEVVQAYRGPGLAgciLTKLDEAA 405
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1624566962 276 KGGVVIGISDQFRIPVKYIGLGEGI-DDLQVFHKKEFVQSLF 316
Cdd:PRK06995 406 SLGGALDVVIRYKLPLHYVSNGQRVpEDLHLANKKFLLHRAF 447
|
|
| RecD |
COG0507 |
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ... |
117-222 |
7.41e-07 |
|
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440273 [Multi-domain] Cd Length: 514 Bit Score: 50.36 E-value: 7.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 117 HVIMVVGVNGVGKTTTIGKLAYQFKKAGNKVMLgAADTFRAAAVeqLdiwGERAGVPV--VKQKLGADPASVAFDTLQSA 194
Cdd:COG0507 141 RVSVLTGGAGTGKTTTLRALLAALEALGLRVAL-AAPTGKAAKR--L---SESTGIEArtIHRLLGLRPDSGRFRHNRDN 214
|
90 100
....*....|....*....|....*...
gi 1624566962 195 KANDIDVVIIDTAGRLHNKkgLMDELTK 222
Cdd:COG0507 215 PLTPADLLVVDEASMVDTR--LMAALLE 240
|
|
| DEXSc_RecD-like |
cd17933 |
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ... |
117-208 |
1.43e-05 |
|
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350691 [Multi-domain] Cd Length: 155 Bit Score: 44.47 E-value: 1.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 117 HVIMVVGVNGVGKTTTIGKLAYQFKKAGNKVMLgAADTFRAAAVeqLdiwGERAGVPV--VKQKLGADPASVAFDTLQSA 194
Cdd:cd17933 13 RVSVLTGGAGTGKTTTLKALLAALEAEGKRVVL-AAPTGKAAKR--L---SESTGIEAstIHRLLGINPGGGGFYYNEEN 86
|
90
....*....|....
gi 1624566962 195 KaNDIDVVIIDTAG 208
Cdd:cd17933 87 P-LDADLLIVDEAS 99
|
|
| ParA_partition |
NF041546 |
ParA family partition ATPase; |
126-210 |
5.38e-05 |
|
ParA family partition ATPase;
Pssm-ID: 469431 [Multi-domain] Cd Length: 202 Bit Score: 43.31 E-value: 5.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 126 GVGKTTTIGKLAYQFKKAGNKVML------GAADTFRAAAveqldiwGERAGVPVVkqklGADPASVAfDTLQSAkANDI 199
Cdd:NF041546 10 GVGKTTLATHLAAALARRGYRVLLvdadpqGSALDWAAAR-------EDERPFPVV----GLARPTLH-RELPSL-ARDY 76
|
90
....*....|.
gi 1624566962 200 DVVIIDTAGRL 210
Cdd:NF041546 77 DFVVIDGPPRA 87
|
|
| AAA_30 |
pfam13604 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
118-250 |
1.23e-04 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. There is a Walker A and Walker B.
Pssm-ID: 433343 [Multi-domain] Cd Length: 191 Bit Score: 42.17 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 118 VIMVVGVNGVGKTTTIGKLAYQFKKAGNKVmLGAADTfrAAAVEQLdiwGERAGVPvvkqklgADP-ASVAFDTLQSAKA 196
Cdd:pfam13604 20 VAVLVGPAGTGKTTALKALREAWEAAGYRV-IGLAPT--GRAAKVL---GEELGIP-------ADTiAKLLHRLGGRAGL 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1624566962 197 NDIDVVIIDTAGRLHNKkgLMDELTKIknvmqkvVPDAPHEVLLVldGSTGQNA 250
Cdd:pfam13604 87 DPGTLLIVDEAGMVGTR--QMARLLKL-------AEDAGARVILV--GDPRQLP 129
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
114-244 |
1.78e-03 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 38.64 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 114 HKPHVIMVVGVNGVGKTTTIGKLAYQFKKAGNKVMLGAADTFRAaaveqLDIWGERAGVPVVKQKLGADPASVAFDTLQS 193
Cdd:pfam13191 22 GRPPSVLLTGEAGTGKTTLLRELLRALERDGGYFLRGKCDENLP-----YSPLLEALTREGLLRQLLDELESSLLEAWRA 96
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1624566962 194 AK---ANDIDVVIIDTAGRLHnkkglmDELTKIKNVMQKvvpdAPHEVLLVLDG 244
Cdd:pfam13191 97 ALleaLAPVPELPGDLAERLL------DLLLRLLDLLAR----GERPLVLVLDD 140
|
|
| AAA_24 |
pfam13479 |
AAA domain; This AAA domain is found in a wide variety of presumed phage proteins. |
115-210 |
3.68e-03 |
|
AAA domain; This AAA domain is found in a wide variety of presumed phage proteins.
Pssm-ID: 433243 Cd Length: 199 Bit Score: 38.08 E-value: 3.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624566962 115 KPHVIMVVGVNGVGKTTTIgklayqfKKAGNKVMLgaaDTFRAAAVeqLDIWgerAGVPVVKQKLGADPASvAFDTLQSA 194
Cdd:pfam13479 1 KKLKILIYGPSGIGKTTFA-------KTLPKPLFL---DTEKGSKA--LDGD---RFPDIVIRDSWQDFLD-AIDELTAA 64
|
90
....*....|....*.
gi 1624566962 195 KANDIDVVIIDTAGRL 210
Cdd:pfam13479 65 ELADYKTIVIDTVDWL 80
|
|
| |
