|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
31-368 |
1.21e-73 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 231.53 E-value: 1.21e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 31 PELGAVAGLVLVTIFFFFtANPAMFTLAGVVNFMAPAAQLGILAIGAALLMIGGEFDLSIGSMVAFAGLVFGTALVVLNL 110
Cdd:COG1172 17 PELGLLLALVLLLVVFSI-LSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVALGL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 111 PLSVAILIALGFAVVIGVTNAQLTMRTGLPSFIVTLAFLFILRGLTLvglkWASGGATQlrgmkeaaadsplapifsgEA 190
Cdd:COG1172 96 PILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLAL----LLTGGRPI-------------------SG 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 191 FTGLFSWLGSRGIIetfpngtpkvpGIPVEILWFVLIALLATWVLLRTRFGNWIFAAGGDPRAARKSGVPVARVKTTLFI 270
Cdd:COG1172 153 LPDAFRALGQGSLL-----------GIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYV 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 271 ITAMCATLVAILTVLDAGSTDARRGFQKEFEAIIAAVIGGCLLTGGYGSAIGAFFGSIVFGMVLIGLTYTSIDQDWYLVF 350
Cdd:COG1172 222 LSGLLAGLAGILLAARLGSAQPNAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIV 301
|
330
....*....|....*...
gi 1654818376 351 LGGMLLTAVIFNNVIRKR 368
Cdd:COG1172 302 KGAIILLAVLLDRLRRRR 319
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
67-362 |
3.00e-61 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 197.63 E-value: 3.00e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 67 AAQLGILAIGAALLMIGGEFDLSIGSMVAFAGLVFGTALVVLNLPLSVAILIALGFAVVIGVTNAQLTMRTGLPSFIVTL 146
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 147 AFLFILRGLTLvglkWASGGAtqlrgmkeaaadsplapifSGEAFTGLFSWLGSRGiietfpngtpKVPGIPVEILWFVL 226
Cdd:cd06579 81 GTMFILRGLAL----LITGGR-------------------PISGLPPLFSFFLGGG----------LILGIPVPVLIALA 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 227 IALLATWVLLRTRFGNWIFAAGGDPRAARKSGVPVARVKTTLFIITAMCATLVAILTVLDAGSTDARRGFQKEFEAIIAA 306
Cdd:cd06579 128 VALVAWFLLRRTRFGRYLYAVGGNPEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAV 207
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1654818376 307 VIGGCLLTGGYGSAIGAFFGSIVFGMVLIGLTYTSIDQDWYLVFLGGMLLTAVIFN 362
Cdd:cd06579 208 VLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
36-363 |
1.64e-29 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 115.97 E-value: 1.64e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 36 VAGLVLVTIFFFFtaNPAMFTLAGVVNFMAPAAQLGILAIGAALLMIGGEFDLSIGSMVAFAGlVFGTALVVLNLPLSVA 115
Cdd:PRK09512 23 IALLVLIAIVSTL--SPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTG-AVAASIVGIEVNALVA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 116 ILIALGFAVVIGVTNAQLTMRTGLPSFIVTLAFLFILRGLTLVglkWASGgatqlrgmkeaaadSPLAPIFSGEAftGLF 195
Cdd:PRK09512 100 VPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMV---YTDG--------------SPINTGFTDNA--DLF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 196 SWLGsrgiietfpngTPKVPGIPVEIlWFVLIALLATWVLLR-TRFGNWIFAAGGDPRAARKSGVPVARVKTTLFIITAM 274
Cdd:PRK09512 161 GWFG-----------IGRPLGIPTPV-WIMAIVFLAAWYMLHhTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGL 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 275 CATLVAILTVLDAGSTDARRGFQKEFEAIIAAVIGGCLLTGGYGSAIGAFFGSIVFGMVLIGLTYTSIDQDWYLVFLGGM 354
Cdd:PRK09512 229 LAALAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVV 308
|
....*....
gi 1654818376 355 LLTAVIFNN 363
Cdd:PRK09512 309 ILLAVLVDN 317
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
32-368 |
1.02e-27 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 112.17 E-value: 1.02e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 32 ELGAVAGLVLVTIFFFFTANPAMFTLAGVVNFMAPAAQLGILAIGAALLMIGGEFDLSIGSMVAFAGLVFGTALVVLNLP 111
Cdd:NF040906 4 QYGMLIALVAIVVLFQILTGGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGMP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 112 LSVAILIALGFAVVIGVTNAQLTMRTGLPSFIVTLAFLFILRGLTLVGL-------------KWASGGATQLRGMKEAaa 178
Cdd:NF040906 84 WWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLggqsigpfpdgfqKISSGFLPDLFGGTGL-- 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 179 dsPLAPIFSGEAFTGLFSWLGSRGIIETFPNGTPKVP--------------------------GIPVEILWFVLIALLAT 232
Cdd:NF040906 162 --HLLTLLLGVLAAAALVWSQLRGRRRRIKYGLEVEPmalfiaklvliaaailfftyllasyrGLPNVLIILGVLILVYS 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 233 WVLLRTRFGNWIFAAGGDPRAARKSGVPVARVKTTLFIITAMCATLVAILTVLDAGSTDARRGFQKEFEAIIAAVIGGCL 312
Cdd:NF040906 240 FVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGAS 319
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1654818376 313 LTGGYGSAIGAFFGSIVFGMVLIGLTYTSIDQDWYLVFLGGMLLTAVIFnNVIRKR 368
Cdd:NF040906 320 ASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAF-DVYNKR 374
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
59-359 |
5.10e-26 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 105.03 E-value: 5.10e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 59 GVVNFMAPAAQLGILAIGAALLM-IGGEFDLSIGSMVAFAGLVFGTALVVLNLPLSVAILIALGFAVVIGVTNAQLTMRT 137
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 138 GLPSFIVTLAFLFILRGLTLVGLKWASGGAtqlrgmkEAAADSPLAPIFSGEAFTGLFSWLgsrgiietfpngtpkvpgi 217
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFLVTGILGGE-------GGTSGITGPSGFPGAFLSFAFAFI------------------- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 218 pveILWFVLIALLATWVLLRTRFGNWIFAAGGDPRAARKSGVPVARVKTTLFIITAMCATLVAILTVLDAGSTDARR-GF 296
Cdd:pfam02653 135 ---FLLALLLVLALWLLLYRTKFGRALRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSNfGV 211
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1654818376 297 QKEFEAIIAAVIGGClltggyGSAIGAFFGSIVFGMVLI-GLTYTSIDQDWYLVFLGGMLLTAV 359
Cdd:pfam02653 212 GLGLDAIAAVVLGGA------GSPIGVVIGSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
31-368 |
1.21e-73 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 231.53 E-value: 1.21e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 31 PELGAVAGLVLVTIFFFFtANPAMFTLAGVVNFMAPAAQLGILAIGAALLMIGGEFDLSIGSMVAFAGLVFGTALVVLNL 110
Cdd:COG1172 17 PELGLLLALVLLLVVFSI-LSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVALGL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 111 PLSVAILIALGFAVVIGVTNAQLTMRTGLPSFIVTLAFLFILRGLTLvglkWASGGATQlrgmkeaaadsplapifsgEA 190
Cdd:COG1172 96 PILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLAL----LLTGGRPI-------------------SG 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 191 FTGLFSWLGSRGIIetfpngtpkvpGIPVEILWFVLIALLATWVLLRTRFGNWIFAAGGDPRAARKSGVPVARVKTTLFI 270
Cdd:COG1172 153 LPDAFRALGQGSLL-----------GIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYV 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 271 ITAMCATLVAILTVLDAGSTDARRGFQKEFEAIIAAVIGGCLLTGGYGSAIGAFFGSIVFGMVLIGLTYTSIDQDWYLVF 350
Cdd:COG1172 222 LSGLLAGLAGILLAARLGSAQPNAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIV 301
|
330
....*....|....*...
gi 1654818376 351 LGGMLLTAVIFNNVIRKR 368
Cdd:COG1172 302 KGAIILLAVLLDRLRRRR 319
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
67-362 |
3.00e-61 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 197.63 E-value: 3.00e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 67 AAQLGILAIGAALLMIGGEFDLSIGSMVAFAGLVFGTALVVLNLPLSVAILIALGFAVVIGVTNAQLTMRTGLPSFIVTL 146
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 147 AFLFILRGLTLvglkWASGGAtqlrgmkeaaadsplapifSGEAFTGLFSWLGSRGiietfpngtpKVPGIPVEILWFVL 226
Cdd:cd06579 81 GTMFILRGLAL----LITGGR-------------------PISGLPPLFSFFLGGG----------LILGIPVPVLIALA 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 227 IALLATWVLLRTRFGNWIFAAGGDPRAARKSGVPVARVKTTLFIITAMCATLVAILTVLDAGSTDARRGFQKEFEAIIAA 306
Cdd:cd06579 128 VALVAWFLLRRTRFGRYLYAVGGNPEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAV 207
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1654818376 307 VIGGCLLTGGYGSAIGAFFGSIVFGMVLIGLTYTSIDQDWYLVFLGGMLLTAVIFN 362
Cdd:cd06579 208 VLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
32-368 |
7.98e-47 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 163.75 E-value: 7.98e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 32 ELGAVAGLVLVTIFFFFTANPAMFTLAGVVNFMAPAAQLGILAIGAALLMIGGEFDLSIGSMVAFAGLVFGTALVVLNLP 111
Cdd:COG4214 24 SLGMIIALVVIWIVFQILTGGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVGAVAAVLMVNWGLP 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 112 LSVAILIALGFAVVIGVTNAQLTMRTGLPSFIVTLAFLFILRGLTLvglkWASGGATQlrgmkeAAADSPLAPIFSG--E 189
Cdd:COG4214 104 WWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTL----LVLGGGTI------APFDPTFQAIGNGflP 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 190 AFTGLFSW-LGSRGII-------------------------ETFPNGTPKV------------PGIPVEILWFVLIALLA 231
Cdd:COG4214 174 DILGTLSWvLGAVAVAayvalqlrsrrrrrryglpveplwlFVLKLALLAVlilgavyllnsyRGIPIVVLILLVLVVVY 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 232 TWVLLRTRFGNWIFAAGGDPRAARKSGVPVARVKTTLFIITAMCATLVAILTV--LDAGSTDARRGFqkEFEAIIAAVIG 309
Cdd:COG4214 254 TFVLTRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAarLNSATPSAGTGF--ELDAIAAAVIG 331
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1654818376 310 GCLLTGGYGSAIGAFFGSIVFGMVLIGLTYTSIDQDWYLVFLGGMLLTAVIFNNVIRKR 368
Cdd:COG4214 332 GTSLFGGVGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAFDVLSRRR 390
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
36-363 |
1.64e-29 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 115.97 E-value: 1.64e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 36 VAGLVLVTIFFFFtaNPAMFTLAGVVNFMAPAAQLGILAIGAALLMIGGEFDLSIGSMVAFAGlVFGTALVVLNLPLSVA 115
Cdd:PRK09512 23 IALLVLIAIVSTL--SPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTG-AVAASIVGIEVNALVA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 116 ILIALGFAVVIGVTNAQLTMRTGLPSFIVTLAFLFILRGLTLVglkWASGgatqlrgmkeaaadSPLAPIFSGEAftGLF 195
Cdd:PRK09512 100 VPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMV---YTDG--------------SPINTGFTDNA--DLF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 196 SWLGsrgiietfpngTPKVPGIPVEIlWFVLIALLATWVLLR-TRFGNWIFAAGGDPRAARKSGVPVARVKTTLFIITAM 274
Cdd:PRK09512 161 GWFG-----------IGRPLGIPTPV-WIMAIVFLAAWYMLHhTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGL 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 275 CATLVAILTVLDAGSTDARRGFQKEFEAIIAAVIGGCLLTGGYGSAIGAFFGSIVFGMVLIGLTYTSIDQDWYLVFLGGM 354
Cdd:PRK09512 229 LAALAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVV 308
|
....*....
gi 1654818376 355 LLTAVIFNN 363
Cdd:PRK09512 309 ILLAVLVDN 317
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
32-368 |
1.02e-27 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 112.17 E-value: 1.02e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 32 ELGAVAGLVLVTIFFFFTANPAMFTLAGVVNFMAPAAQLGILAIGAALLMIGGEFDLSIGSMVAFAGLVFGTALVVLNLP 111
Cdd:NF040906 4 QYGMLIALVAIVVLFQILTGGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGMP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 112 LSVAILIALGFAVVIGVTNAQLTMRTGLPSFIVTLAFLFILRGLTLVGL-------------KWASGGATQLRGMKEAaa 178
Cdd:NF040906 84 WWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLggqsigpfpdgfqKISSGFLPDLFGGTGL-- 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 179 dsPLAPIFSGEAFTGLFSWLGSRGIIETFPNGTPKVP--------------------------GIPVEILWFVLIALLAT 232
Cdd:NF040906 162 --HLLTLLLGVLAAAALVWSQLRGRRRRIKYGLEVEPmalfiaklvliaaailfftyllasyrGLPNVLIILGVLILVYS 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 233 WVLLRTRFGNWIFAAGGDPRAARKSGVPVARVKTTLFIITAMCATLVAILTVLDAGSTDARRGFQKEFEAIIAAVIGGCL 312
Cdd:NF040906 240 FVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGAS 319
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1654818376 313 LTGGYGSAIGAFFGSIVFGMVLIGLTYTSIDQDWYLVFLGGMLLTAVIFnNVIRKR 368
Cdd:NF040906 320 ASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAF-DVYNKR 374
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
59-359 |
5.10e-26 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 105.03 E-value: 5.10e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 59 GVVNFMAPAAQLGILAIGAALLM-IGGEFDLSIGSMVAFAGLVFGTALVVLNLPLSVAILIALGFAVVIGVTNAQLTMRT 137
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 138 GLPSFIVTLAFLFILRGLTLVGLKWASGGAtqlrgmkEAAADSPLAPIFSGEAFTGLFSWLgsrgiietfpngtpkvpgi 217
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFLVTGILGGE-------GGTSGITGPSGFPGAFLSFAFAFI------------------- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 218 pveILWFVLIALLATWVLLRTRFGNWIFAAGGDPRAARKSGVPVARVKTTLFIITAMCATLVAILTVLDAGSTDARR-GF 296
Cdd:pfam02653 135 ---FLLALLLVLALWLLLYRTKFGRALRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSNfGV 211
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1654818376 297 QKEFEAIIAAVIGGClltggyGSAIGAFFGSIVFGMVLI-GLTYTSIDQDWYLVFLGGMLLTAV 359
Cdd:pfam02653 212 GLGLDAIAAVVLGGA------GSPIGVVIGSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
39-362 |
2.62e-25 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 104.77 E-value: 2.62e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 39 LVLVTIFFFftANPAMFTLAGVVNFMAPAAQLGILAIGAALLMIGGEFDLSIGSMVAFAGLVFGTALVVLN--------- 109
Cdd:PRK09478 23 LVLLAIIII--QDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMDnankvfpel 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 110 --LPLSVAILIALGFAVVIGVTNAQLTMRTGLPSFIVTLAFLFILRGLTlvGLKWASGGATQLRGmkeaaadspLAPIFS 187
Cdd:PRK09478 101 atMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGIN--SLYYDFVGASPISG---------FDSGFS 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 188 geAFTGLFSWLGSRGIietfPNgtpkvpgipveILWFVLIALLATWVLL-RTRFGNWIFAAGGDPRAARKSGVPVARvkt 266
Cdd:PRK09478 170 --TFAQGFVALGSFRL----SY-----------ITFYALIAVAFVWVLWnKTRFGKNIFAIGGNPEAAKVSGVNVPL--- 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 267 TLFIITAMCATLVAILTVLDA---GSTDARRGFQKEFEAIIAAVIGGCLLTGGYGSAIGAFFGSIVFGMVLIGLTYTSID 343
Cdd:PRK09478 230 NLLMIYALSGVFYAFGGMLEAgriGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVN 309
|
330
....*....|....*....
gi 1654818376 344 QDWYLVFLGGMLLTAVIFN 362
Cdd:PRK09478 310 PYWQYIIKGAIIIFAVALD 328
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
52-360 |
2.22e-24 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 101.57 E-value: 2.22e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 52 PAMFTLAGVVNFMAPAAQLGILAIGAALLMIGGEFDLSIGSMVAFAGLVFGTALVVLNLPLSVAILIALGFAVVIGVTNA 131
Cdd:PRK11618 27 PGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIGDYGWSPLLAFPLVLVMGAAFGAFMG 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 132 QLTMRTGLPSFIVTLAFLFILRGLTLvglkwasggatqLRGMKEAAADSPLAPIFSGEAFTglfswlgsrgiietFPNGT 211
Cdd:PRK11618 107 ALIHYLKLPAFIVTLAGMFLARGVSF------------LVSEESIPINHPFYDTLSSLAWK--------------LPGGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 212 PKVPGIPVEILWFVLIALLATwvllRTRFGNWIFAAGGDPRAARKSGVPVARVKTTLFIITAMCATLVAILTVLDAGSTD 291
Cdd:PRK11618 161 RLSAMALIMLAVVAIGIFLAH----RTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGY 236
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1654818376 292 ARRGFQKEFEAIIAAVIGGCLLTGGYGSAIGAFFGSIVFGMVLIGLTYTSIDQDWYLVFLGGMLLTAVI 360
Cdd:PRK11618 237 ALAAVGVELDAIAAVVIGGTLLTGGVGTVLGTLFGVLIQGLIQTYITFDGTLSSWWTKIVIGILLFVFI 305
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
34-367 |
3.16e-22 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 95.61 E-value: 3.16e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 34 GAVAGLVLVTIFFFFTANPAMFTLAGVVNFMAPAAQLGILAIGAALLMIGGEFDLSIGSMVAFAGLVFGTALVVLNLPLS 113
Cdd:PRK09699 13 GTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDPFL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 114 VAILIALGFAVVIGVTNAQLTMRTGLPSFIVTLAFLFILRGLTLVglkwasggatqlrgmkeaaadsplapIFSGEAFTG 193
Cdd:PRK09699 93 AALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLV--------------------------ISDANSVYG 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 194 LfswlgSRGIIETFPNgtpKVPGIPVEILWFVLIALLATWVLLRTRFGNWIFAAGGDPRAARKSGVPVARVKTTLFIITA 273
Cdd:PRK09699 147 F-----SFDFVNFFAA---SVIGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISG 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 274 MCATLVAILTVLDAGSTDARRGFQKEFEAIIAAVIGGCLLTGGYGSAIGAFFGSIVFGMVLIGLTYTSIDQDWYLVFLGG 353
Cdd:PRK09699 219 VCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGG 298
|
330
....*....|....
gi 1654818376 354 MLLTAVIFNNVIRK 367
Cdd:PRK09699 299 LIIAAVALDRLISK 312
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
38-368 |
6.70e-21 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 92.05 E-value: 6.70e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 38 GLVLVTIFFFFTAN---PAMFTLAGVVNFMAPAAQLGILAIGAALLMIGGEFDLSIGSMVAFAGLVfgtALVVLNLPLSV 114
Cdd:PRK11285 31 GMLVVFAVLFIACSlfvPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGVV---TAVVINATESL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 115 AILIALGFA--VVIGVTNAQLTMRTGLPSFIVTLAFLFILRGLTLVglkwASGGAtqlrgmkeaaadsplAPIFSGEAFt 192
Cdd:PRK11285 108 WLGVAAGLLlgAAVGLVNGFVIARLKINALITTLATMQIVRGLAYI----ISDGK---------------AVGISDERF- 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 193 glfswlgsrgiietFPNGTPKVPGIPVEILWFVLIALLATWVLLRTRFGNWIFAAGGDPRAARKSGVPVARVKTTLFIIT 272
Cdd:PRK11285 168 --------------FALGYANFFGVPAPIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQ 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 273 AMCATLVAILTVLDAGSTDARRGFQKEFEAIIAAVIGGCLLTGGYGSAIGAFFGSIVFGMVLIGLTYTSIDQDWYLVFLG 352
Cdd:PRK11285 234 GLVSALAGVILASRMTSGQPMTSIGFELIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRG 313
|
330
....*....|....*.
gi 1654818376 353 GMLLTAVIFNNVIRKR 368
Cdd:PRK11285 314 LILLAAVLFDRYKQRA 329
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
23-366 |
7.13e-20 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 89.40 E-value: 7.13e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 23 MMTALLRRPELGAVAGLVLVTIFFFFTaNPAMFTLAGVVNFMAPAAQLGILAIGAALLMIGGEFDLSIGSMVAFAGLVFG 102
Cdd:PRK15432 1 MLKFIQNNRELTALLAIVLLFVLLGFL-DRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 103 TALVVlNLPLSVAILIALGFAVVIGVTNAQLTMRTGLPSFIVTLAFLFILRGLTLV--GLKWASGGATQLRGMKEaaads 180
Cdd:PRK15432 80 MLLNA-GYSLPVACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLwtGGKWIEGLPAELKQLSA----- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 181 plaPIFSGeaftglFSWLGsrgiietfpngtpkvpgipveilWFVLIALLAT-WVLLRTRFGNWIFAAGGDPRAARKSGV 259
Cdd:PRK15432 154 ---PILLG------ISPIG-----------------------WLTLILILAMaWLLAKTAFGRSFYATGDNLQGARQLGV 201
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 260 PVARVKTTLFIITAMCATLVAILTVLDAGSTDARRGFQKEFEAIIAAVIGGCLLTGGYGSAIGAFFGSIVFGMVLIGLTY 339
Cdd:PRK15432 202 RTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAIAACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVL 281
|
330 340
....*....|....*....|....*..
gi 1654818376 340 TSIDQDWYLVFLGGMLLTAVIFNNVIR 366
Cdd:PRK15432 282 LRIPAWWNDFIAGLVLLGVLVFDGRLR 308
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
35-360 |
2.71e-19 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 87.58 E-value: 2.71e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 35 AVAGLVLVTIFFFFTANPAMFTLAGVVNFMAPAAQLGILAIGAALLMIGGEFDLSIGSMVAFAGLVFGTaLVVLNLPLSV 114
Cdd:PRK15038 10 ALAALLVIEILAFGLINPRMLDINVLLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLCAIALGV-LFQSGVPMPL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 115 AILIALGFAVVIGVTNAQLTMRTGLPSFIVTLAFLFILrgltlvglkwaSGGATQLRGMKEAaadsplapifsgeafTGL 194
Cdd:PRK15038 89 AILLTLLLGALCGLINAGLIIYTGVNPLVITLGTLYLF-----------GGSALLLSGMAGA---------------TGY 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 195 FSWLGSRGIIETFPNGTpkVPGIPVEILWFVLIALLATWVLLRTRFGNWIFAAGGDPRAARKSGVPVARVKTTLFIITAM 274
Cdd:PRK15038 143 EGIGGFPMAFTDFANLD--VLGLPVPLIIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGL 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 275 CATLVAILTVLDAGSTDARRGFQKEFEAIIAAVIGGCLLTGGYGSAIGAFFGSIVFGMVLIGLTYTSIDQDWYLVFLGGM 354
Cdd:PRK15038 221 ASAIAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQQGLQMAGVPNQISSALSGAL 300
|
....*.
gi 1654818376 355 LLTAVI 360
Cdd:PRK15038 301 LIVVVV 306
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
70-361 |
4.63e-14 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 71.32 E-value: 4.63e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 70 LGILAIGAALLM-IGGEFDLSIGSMVAFAGLVFGTALVVLNLPLSVAILIALGFAVVIGVTNAQLTMRTGLPSF-IVTLA 147
Cdd:cd06581 4 YAILALGLNLLLgYAGQLSLGHAAFFGIGAYTAALLATRLGLPFWLALLAAGLVAALVGLLLGLPALRLRGVYFaIATLA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 148 FLFILRGLtLVGLKWASGGATQLRGMkeaaadSPLAPIFSGEAFTGLFSWLgsrgiietfpngtpkvpgipveILWFVLI 227
Cdd:cd06581 84 FAEIVRLL-ALNWSSLTGGSNGLSGI------PPPLLGGLLLSSPLAFYYL----------------------VLAVLLL 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 228 ALLATWVLLRTRFGNWIFAAGGDPRAARKSGVPVARVKTTLFIITAMCATLVAILTVLDAGSTDARR-GFQKEFEAIIAA 306
Cdd:cd06581 135 VLLLLRRLVRSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPESfGFALSIELLLMV 214
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1654818376 307 VIggclltGGYGSAIGAFFGSIVFGMVLIGLtyTSIDQDWYLVFLGGMLLTAVIF 361
Cdd:cd06581 215 VL------GGLGSLLGPVLGAALLVLLPELL--RSLGPGLRLLVFGLLLILVVLF 261
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
61-361 |
1.19e-13 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 70.50 E-value: 1.19e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 61 VNFMAPAAQLGILAIGAALLM-IGGEFDLSIGSMVAFAGLVFGTALVVLNLPLSVAILIALGFAVVIGVTNAQLTMRTGL 139
Cdd:COG4177 5 LSLLTLILIYAILALGLNLLLgYTGLLSLGHAAFFGIGAYAAALLTTHLGLPFWLALLLAGLVAALLGLLIGLPALRLRG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 140 PSF-IVTLAFLFILRGLtLVGLKWASGGATQLRGMkeaaadsPLAPIFSGEAFTGLFSWLGsrgiietfpngtpkvpgip 218
Cdd:COG4177 85 DYLaIATLAFAEIVRLL-ALNLESLTGGADGLSGI-------PRPTLFGLDLGSPLAFYYL------------------- 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 219 veILWFVLIALLATWVLLRTRFGNWIFAAGGDPRAARKSGVPVARVKTTLFIITAMCATLVAILTVLDAGSTDARR-GFQ 297
Cdd:COG4177 138 --VLALLVLVLLLLRRLVRSRFGRALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSPESfSFL 215
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1654818376 298 KEFEAIIAAVIggclltGGYGSAIGAFFGSIVFgmvLIGLTYTSIDQDWYLVFLGGMLLTAVIF 361
Cdd:COG4177 216 LSIEILLMVVL------GGLGSLLGPVLGAVLL---VLLPELLRSLPEYRLLIFGLLLILVVLF 270
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
60-333 |
3.34e-09 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 57.38 E-value: 3.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 60 VVNFMAPAAQLGILAIGAALLM-IGGEFDLSIGSMVAFAGLVFGTALVVLNLPLSVAILIALGFAVVIGVTNAQLTMR-- 136
Cdd:COG0559 8 LLNGLSLGSIYALIALGLTLIFgVMGVINFAHGEFVMLGAYVAYTLATLLGLPLWLALLLAVLVAALLGVLLERLVIRpl 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 137 ---TGLPSFIVTLAFLFILRGLTLVGLkwasgGATqlrgmkeaaadsplaPIFSGEAFTGLFSWLGSRgiietfpngtpk 213
Cdd:COG0559 88 rgaPPLALLLATIGLSLVLQGLVLLIF-----GAD---------------PRSFPALLSGSVELGGVS------------ 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 214 VPGIPVEILWFVLIALLATWVLL-RTRFGNWIFAAGGDPRAARKSGVPVARVKTTLFIITAMCATLVAILTVLDAgSTDA 292
Cdd:COG0559 136 IPAYRLFIIVVALVLLAALWLFLrRTRLGLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLAPIY-SVSP 214
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1654818376 293 RRGFQKEFEAIIAAVIggclltGGYGSAIGAFFGSIVFGMV 333
Cdd:COG0559 215 TMGFLLGLKAFAAVVL------GGLGSIPGAVVGGLLLGLA 249
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
67-333 |
5.23e-09 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 56.67 E-value: 5.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 67 AAQLGILAIGAALLM-IGGEFDLSIGSMVAFAGLVFGTALVVLNLPLSVAILIALGFAVVIGVTNAQLTMR----TGLPS 141
Cdd:cd06582 5 GAIYALIALGLTLIFgVTGVINFAHGEFYMLGAYVAYTLLVALGLPFWLALLLALLVAALLGVLLERLVLRplrgAPLLT 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 142 FIVTLAFLFILRGLTLVGLkwasggatqlrgmkeaaadSPLAPIFSGEAFTGLFSWLGSRgiietfpngtpkVPGIPVEI 221
Cdd:cd06582 85 LLITFGGLLILLQGLLLIF-------------------GGDPRVPPPPLLSGSVELGGVT------------IPPYRLFI 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 222 LWFVLIALLATWVLL-RTRFGNWIFAAGGDPRAARKSGVPVARVKTTLFIITAMCATLVAILTVLDAGsTDARRGFQKEF 300
Cdd:cd06582 134 IAVALVLLAALYLFLrRTRLGRAIRAVAQNPEAARLLGINVRRVFALTFALGAALAGLAGVLLAPITG-VSPTMGLLLLL 212
|
250 260 270
....*....|....*....|....*....|...
gi 1654818376 301 EAIIAAVIggclltGGYGSAIGAFFGSIVFGMV 333
Cdd:cd06582 213 KAFAAVVL------GGLGSIPGAVVGGLLLGLA 239
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
70-360 |
1.79e-08 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 54.98 E-value: 1.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 70 LGILAIGAAL-LMIGGEFDLSIGSMVAFAGLVFGTaLVVLNLPLSVAILIALGFAVVIGVTNAQLTMRTGLPSFIVTLAF 148
Cdd:cd06574 4 YAILALGVYIvFRILGFPDLTVDGSFPLGAAVAAI-LIVAGYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGILI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 149 LFILRGLTLVglkwasggatqlrgmkeaAADSPLAPIFSGEAFTGLFSWLGSRGIIetfpngtpkvpGIPVEILWFVLIA 228
Cdd:cd06574 83 MIGLYSINLR------------------IMGGPNIPLGTRDTLLGLLLLFGISGTL-----------SIPVVLLLIVLLV 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 229 LLATWVLLRTRFGNWIFAAGGDPRAARKSGVPVARVKTTLFIITAMCATLVAILTVLDAGSTDARRGFQKEFEAIIAAVI 308
Cdd:cd06574 134 LFLVIWFLRTKLGLAMRATGDNPDMARSLGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVII 213
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1654818376 309 GGCLLTGGYGSA--IGAFFGSIVFGmVLIGLTYTSIDQDWYLVFLGGMLLTAVI 360
Cdd:cd06574 214 GGAIVGRRTIKAsiLGVIIGAILYR-IALALALGSGLIPSDLKLITAGVIVLVL 266
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
225-336 |
7.93e-05 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 43.58 E-value: 7.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654818376 225 VLIALLATWVLLRTRFGNWIFAAGGDPRAARKSGVPVARVKTTLFIITAMCATLV-AILTVLDAGSTDARRGFQKEFEAI 303
Cdd:cd06580 102 LLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAgAYLVLGVQGRFTEGMSAGYGFIAI 181
|
90 100 110
....*....|....*....|....*....|...
gi 1654818376 304 IAAVIGGclltggyGSAIGAFFGSIVFGMVLIG 336
Cdd:cd06580 182 AVALLGR-------WNPLGILLAALLFGALEAG 207
|
|
| NupQ |
COG1079 |
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and ... |
225-276 |
4.29e-03 |
|
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and metabolism];
Pssm-ID: 440697 [Multi-domain] Cd Length: 309 Bit Score: 38.51 E-value: 4.29e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1654818376 225 VLIALLATWVLLRTRFGNWIFAAGGDPRAARKSGVPVARVKTTLFIITAMCA 276
Cdd:COG1079 155 LLLVPLVWWVLYRTRFGLRLRAVGENPAAADALGINVYRIRYLAVLIGGALA 206
|
|
| |
