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Conserved domains on  [gi|1675037629|ref|WP_138561435|]
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MULTISPECIES: zinc ribbon-containing protein [Pseudoalteromonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1451 super family cl19727
Zinc-ribbon containing domain; This family consists of several hypothetical bacterial proteins ...
 4-43 8.27e-11

Zinc-ribbon containing domain; This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein.


The actual alignment was detected with superfamily member pfam07295:

Pssm-ID: 450347  Cd Length: 147  Bit Score: 52.22  E-value: 8.27e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1675037629   4 TGEKPGTGTYQCDNCGNTVTLDdHDDTLPPCPKCHETEYT 43
Cdd:pfam07295 106 SGEVTGPGTLVCDQCGHELHFK-HPGVIPPCPKCGGTEFR 144
 
Name Accession Description Interval E-value
DUF1451 pfam07295
Zinc-ribbon containing domain; This family consists of several hypothetical bacterial proteins ...
 4-43 8.27e-11

Zinc-ribbon containing domain; This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein.


Pssm-ID: 429390  Cd Length: 147  Bit Score: 52.22  E-value: 8.27e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1675037629   4 TGEKPGTGTYQCDNCGNTVTLDdHDDTLPPCPKCHETEYT 43
Cdd:pfam07295 106 SGEVTGPGTLVCDQCGHELHFK-HPGVIPPCPKCGGTEFR 144
PRK11032 PRK11032
zinc ribbon-containing protein;
5-43 7.36e-06

zinc ribbon-containing protein;


Pssm-ID: 182915  Cd Length: 160  Bit Score: 39.59  E-value: 7.36e-06
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1675037629   5 GEKPGTGTYQCDNCGNTVTLDdHDDTLPPCPKCHETEYT 43
Cdd:PRK11032  117 GEVVGLGNLVCEKCHHHLAFY-TPEVLPLCPKCGHDQFQ 154
YrdD COG0551
DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains [Replication, recombination ...
 15-39 1.35e-03

DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains [Replication, recombination and repair];


Pssm-ID: 440317 [Multi-domain]  Cd Length: 695  Bit Score: 33.69  E-value: 1.35e-03
                          10        20
                  ....*....|....*....|....*...
gi 1675037629  15 CDN---CGNTVTLDDHDDTLPPCPKCHE 39
Cdd:COG0551   609 CSNypeCKYTKPLPKPEVTGVKCPKCGK 636
 
Name Accession Description Interval E-value
DUF1451 pfam07295
Zinc-ribbon containing domain; This family consists of several hypothetical bacterial proteins ...
 4-43 8.27e-11

Zinc-ribbon containing domain; This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein.


Pssm-ID: 429390  Cd Length: 147  Bit Score: 52.22  E-value: 8.27e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1675037629   4 TGEKPGTGTYQCDNCGNTVTLDdHDDTLPPCPKCHETEYT 43
Cdd:pfam07295 106 SGEVTGPGTLVCDQCGHELHFK-HPGVIPPCPKCGGTEFR 144
PRK11032 PRK11032
zinc ribbon-containing protein;
5-43 7.36e-06

zinc ribbon-containing protein;


Pssm-ID: 182915  Cd Length: 160  Bit Score: 39.59  E-value: 7.36e-06
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1675037629   5 GEKPGTGTYQCDNCGNTVTLDdHDDTLPPCPKCHETEYT 43
Cdd:PRK11032  117 GEVVGLGNLVCEKCHHHLAFY-TPEVLPLCPKCGHDQFQ 154
YrdD COG0551
DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains [Replication, recombination ...
 15-39 1.35e-03

DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains [Replication, recombination and repair];


Pssm-ID: 440317 [Multi-domain]  Cd Length: 695  Bit Score: 33.69  E-value: 1.35e-03
                          10        20
                  ....*....|....*....|....*...
gi 1675037629  15 CDN---CGNTVTLDDHDDTLPPCPKCHE 39
Cdd:COG0551   609 CSNypeCKYTKPLPKPEVTGVKCPKCGK 636
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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