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Conserved domains on  [gi|1675084293|ref|WP_138601139|]
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MULTISPECIES: Rho-binding antiterminator [Gammaproteobacteria]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Rof COG4568
Transcriptional antiterminator Rof (Rho-off) [Transcription];
1-73 1.60e-18

Transcriptional antiterminator Rof (Rho-off) [Transcription];


:

Pssm-ID: 443625  Cd Length: 87  Bit Score: 71.88  E-value: 1.60e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1675084293  1 MTYQPIACGDYDKYELWCMHNSLLRITLESGEQLEGKAETLKiLNSDGEHLILATKKGEHAIRLDLIKKVVEL 73
Cdd:COG4568    2 EEYQPISCDDYDYLEIACLRRYPVKLTLKNGETIEGKARDTL-TRKKVEYLVLETDGETRELRLDHIASFSAL 73
 
Name Accession Description Interval E-value
Rof COG4568
Transcriptional antiterminator Rof (Rho-off) [Transcription];
1-73 1.60e-18

Transcriptional antiterminator Rof (Rho-off) [Transcription];


Pssm-ID: 443625  Cd Length: 87  Bit Score: 71.88  E-value: 1.60e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1675084293  1 MTYQPIACGDYDKYELWCMHNSLLRITLESGEQLEGKAETLKiLNSDGEHLILATKKGEHAIRLDLIKKVVEL 73
Cdd:COG4568    2 EEYQPISCDDYDYLEIACLRRYPVKLTLKNGETIEGKARDTL-TRKKVEYLVLETDGETRELRLDHIASFSAL 73
ROF pfam07073
Modulator of Rho-dependent transcription termination (ROF); This family consists of several ...
 5-69 1.35e-13

Modulator of Rho-dependent transcription termination (ROF); This family consists of several bacterial modulator of Rho-dependent transcription termination (ROF) proteins. ROF binds transcription termination factor Rho and inhibits Rho-dependent termination in vivo.


Pssm-ID: 429276  Cd Length: 80  Bit Score: 59.14  E-value: 1.35e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1675084293  5 PIACGDYDKYELWCMHNSLLRITLESGEQLEGKAETLKILNSDGEHLILATKKGEHAIRLDLIKK 69
Cdd:pfam07073  1 PISCDDYDYIEIACLYRYPLKLTLKDGETIEGKALDTLTRADKEEYLVIETEGEEQELRLDQLVS 65
PRK11625 PRK11625
Rho-binding antiterminator; Provisional
 2-67 3.65e-13

Rho-binding antiterminator; Provisional


Pssm-ID: 183241  Cd Length: 84  Bit Score: 58.19  E-value: 3.65e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1675084293  2 TYQPIACGDYDKYELWCMHNSLLRITLESGEQLEGKAETLkILNSDGEHLILATKKGEHAIRLDLI 67
Cdd:PRK11625   4 TYQPINCDDYDNLELACQHHLMLTLELKDGEVLQAKASDL-VSRKNVEYLVVEAAGETRELRLDKI 68
 
Name Accession Description Interval E-value
Rof COG4568
Transcriptional antiterminator Rof (Rho-off) [Transcription];
1-73 1.60e-18

Transcriptional antiterminator Rof (Rho-off) [Transcription];


Pssm-ID: 443625  Cd Length: 87  Bit Score: 71.88  E-value: 1.60e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1675084293  1 MTYQPIACGDYDKYELWCMHNSLLRITLESGEQLEGKAETLKiLNSDGEHLILATKKGEHAIRLDLIKKVVEL 73
Cdd:COG4568    2 EEYQPISCDDYDYLEIACLRRYPVKLTLKNGETIEGKARDTL-TRKKVEYLVLETDGETRELRLDHIASFSAL 73
ROF pfam07073
Modulator of Rho-dependent transcription termination (ROF); This family consists of several ...
 5-69 1.35e-13

Modulator of Rho-dependent transcription termination (ROF); This family consists of several bacterial modulator of Rho-dependent transcription termination (ROF) proteins. ROF binds transcription termination factor Rho and inhibits Rho-dependent termination in vivo.


Pssm-ID: 429276  Cd Length: 80  Bit Score: 59.14  E-value: 1.35e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1675084293  5 PIACGDYDKYELWCMHNSLLRITLESGEQLEGKAETLKILNSDGEHLILATKKGEHAIRLDLIKK 69
Cdd:pfam07073  1 PISCDDYDYIEIACLYRYPLKLTLKDGETIEGKALDTLTRADKEEYLVIETEGEEQELRLDQLVS 65
PRK11625 PRK11625
Rho-binding antiterminator; Provisional
 2-67 3.65e-13

Rho-binding antiterminator; Provisional


Pssm-ID: 183241  Cd Length: 84  Bit Score: 58.19  E-value: 3.65e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1675084293  2 TYQPIACGDYDKYELWCMHNSLLRITLESGEQLEGKAETLkILNSDGEHLILATKKGEHAIRLDLI 67
Cdd:PRK11625   4 TYQPINCDDYDNLELACQHHLMLTLELKDGEVLQAKASDL-VSRKNVEYLVVEAAGETRELRLDKI 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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