NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1675096075|ref|WP_138611140|]
View 

MULTISPECIES: CsbD family protein [unclassified Pseudoalteromonas]

Protein Classification

CsbD family protein( domain architecture ID 10007103)

CsbD family protein similar to Lactococcus lactis UPF0337 protein YhjA

CATH:  1.10.1470.10
SCOP:  4002850

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
yjbJ COG3237
Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];
1-65 1.26e-21

Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];


:

Pssm-ID: 442469 [Multi-domain]  Cd Length: 65  Bit Score: 78.68  E-value: 1.26e-21
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1675096075  1 MNNDRMKGNWNELKGKAQQKWGDLTDDDLDKIEGSRTELVGKIQQQYGKSKEEAEREVDEFERTH 65
Cdd:COG3237    1 MNKDKIKGKWKQLKGKAKEAWGKLTDDDLLEAEGKADQLKGKLQEAYGDAKDAAKKAVDDWKDKL 65
 
Name Accession Description Interval E-value
yjbJ COG3237
Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];
1-65 1.26e-21

Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];


Pssm-ID: 442469 [Multi-domain]  Cd Length: 65  Bit Score: 78.68  E-value: 1.26e-21
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1675096075  1 MNNDRMKGNWNELKGKAQQKWGDLTDDDLDKIEGSRTELVGKIQQQYGKSKEEAEREVDEFERTH 65
Cdd:COG3237    1 MNKDKIKGKWKQLKGKAKEAWGKLTDDDLLEAEGKADQLKGKLQEAYGDAKDAAKKAVDDWKDKL 65
PRK10428 PRK10428
hypothetical protein; Provisional
 1-65 4.73e-17

hypothetical protein; Provisional


Pssm-ID: 182452  Cd Length: 69  Bit Score: 67.21  E-value: 4.73e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1675096075  1 MNNDRMKGNWNELKGKAQQKWGDLTDDDLDKIEGSRTELVGKIQQQYGKSKEEAEREVDEFERTH 65
Cdd:PRK10428   1 MNKDEAGGNWKQFKGKVKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRN 65
CsbD pfam05532
CsbD-like; CsbD is a bacterial general stress response protein. It's expression is mediated by ...
 4-56 2.98e-14

CsbD-like; CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.


Pssm-ID: 428512  Cd Length: 53  Bit Score: 59.83  E-value: 2.98e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1675096075  4 DRMKGNWNELKGKAQQKWGDLTDDDLDKIEGSRTELVGKIQQQYGKSKEEAER 56
Cdd:pfam05532  1 DKIEGKAEQVKGKVKEAWGKATGDEKLEAEGKADQLKGKAQQKYGDAKDAAKD 53
 
Name Accession Description Interval E-value
yjbJ COG3237
Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];
1-65 1.26e-21

Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];


Pssm-ID: 442469 [Multi-domain]  Cd Length: 65  Bit Score: 78.68  E-value: 1.26e-21
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1675096075  1 MNNDRMKGNWNELKGKAQQKWGDLTDDDLDKIEGSRTELVGKIQQQYGKSKEEAEREVDEFERTH 65
Cdd:COG3237    1 MNKDKIKGKWKQLKGKAKEAWGKLTDDDLLEAEGKADQLKGKLQEAYGDAKDAAKKAVDDWKDKL 65
PRK10428 PRK10428
hypothetical protein; Provisional
 1-65 4.73e-17

hypothetical protein; Provisional


Pssm-ID: 182452  Cd Length: 69  Bit Score: 67.21  E-value: 4.73e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1675096075  1 MNNDRMKGNWNELKGKAQQKWGDLTDDDLDKIEGSRTELVGKIQQQYGKSKEEAEREVDEFERTH 65
Cdd:PRK10428   1 MNKDEAGGNWKQFKGKVKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRN 65
CsbD pfam05532
CsbD-like; CsbD is a bacterial general stress response protein. It's expression is mediated by ...
 4-56 2.98e-14

CsbD-like; CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.


Pssm-ID: 428512  Cd Length: 53  Bit Score: 59.83  E-value: 2.98e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1675096075  4 DRMKGNWNELKGKAQQKWGDLTDDDLDKIEGSRTELVGKIQQQYGKSKEEAER 56
Cdd:pfam05532  1 DKIEGKAEQVKGKVKEAWGKATGDEKLEAEGKADQLKGKAQQKYGDAKDAAKD 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH