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Conserved domains on  [gi|1681045956|ref|WP_139114816|]
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MULTISPECIES: ABC-type transport auxiliary lipoprotein family protein [Sphingomonadaceae]

Protein Classification

PqiC family protein; membrane integrity-associated transporter subunit PqiC; membrane integrity-associated transporter subunit PqiC( domain architecture ID 10007093)

PqiC family protein similar to Escherichia coli membrane integrity-associated transporter subunit PqiC, which is a component of a transport pathway that contributes to membrane integrity; membrane integrity-associated transporter subunit PqiC is a component of a transport pathway that contributes to membrane integrity; membrane integrity-associated transporter subunit PqiC is a component of a transport pathway that contributes to membrane integrity

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 25-210 1.79e-28

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


:

Pssm-ID: 442451  Cd Length: 202  Bit Score: 106.62  E-value: 1.79e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1681045956  25 LLGGGERADLFRFGVvdPTPVTGMQGALPtRSVSLLRPRFSQEVEGDRMLTTRGERAL-YLKGVRWVAPVPDLFTQALMR 103
Cdd:COG3218    24 SLPAPPPPTLYDLTP--PLPAAAAAGPLP-AQLLVAEPTAPGALDSDRIVVRPDPGQLqYYAGARWADPPPRLLQDLLVE 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1681045956 104 QYAARAPDVRLTGVRNATGASHALQIDIERFEARYaldggEKAPPTVIIEGDATLFDLSDRRPVEAKRFLVQEPASANTT 183
Cdd:COG3218   101 ALEASGRFRAVGRPGSGLAADYRLEGELRDFEQDF-----DGGAPRAVVELRARLVDDRDGRVVASRRFEARVPAASADA 175

                         170       180
                  ....*....|....*....|....*..
gi 1681045956 184 SGIVAAFDRAVARSTTELTDWSADTAR 210
Cdd:COG3218   176 AGVVAALNQALDQLLAEIVAWLAAQLA 202
 
Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 25-210 1.79e-28

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


Pssm-ID: 442451  Cd Length: 202  Bit Score: 106.62  E-value: 1.79e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1681045956  25 LLGGGERADLFRFGVvdPTPVTGMQGALPtRSVSLLRPRFSQEVEGDRMLTTRGERAL-YLKGVRWVAPVPDLFTQALMR 103
Cdd:COG3218    24 SLPAPPPPTLYDLTP--PLPAAAAAGPLP-AQLLVAEPTAPGALDSDRIVVRPDPGQLqYYAGARWADPPPRLLQDLLVE 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1681045956 104 QYAARAPDVRLTGVRNATGASHALQIDIERFEARYaldggEKAPPTVIIEGDATLFDLSDRRPVEAKRFLVQEPASANTT 183
Cdd:COG3218   101 ALEASGRFRAVGRPGSGLAADYRLEGELRDFEQDF-----DGGAPRAVVELRARLVDDRDGRVVASRRFEARVPAASADA 175

                         170       180
                  ....*....|....*....|....*..
gi 1681045956 184 SGIVAAFDRAVARSTTELTDWSADTAR 210
Cdd:COG3218   176 AGVVAALNQALDQLLAEIVAWLAAQLA 202
ABC_trans_aux pfam03886
ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial ...
 42-201 1.04e-15

ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.


Pssm-ID: 427568  Cd Length: 155  Bit Score: 71.58  E-value: 1.04e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1681045956  42 PTPVTGMQGALPTRSVSLLRPRFSQEVEGDRMLTTRGERAL-YLKGVRWVAPVPDLFTQALMRQYAARAPDVRLT--GVR 118
Cdd:pfam03886   1 PAPAATPAASSPQPQLEVGPVSLPDYLDRPQIVVRTGDGQLqLAENARWAEPLDDQITRALAADLSRRLPSRRVAafPWP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1681045956 119 NATGASHALQIDIERFEARYAldggekapPTVIIEGDATLFDLSDRRPVEAKRFLVQEPASANTTSGIVAAFDRAVARST 198
Cdd:pfam03886  81 LGGTPDYRLQVDVRRFDGRPG--------GNAVLEARWTLLDAGGGRVLTSRSFRISEPVAGDGYAALVAALSQALAQLA 152


                  ...
gi 1681045956 199 TEL 201
Cdd:pfam03886 153 AQI 155
 
Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 25-210 1.79e-28

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


Pssm-ID: 442451  Cd Length: 202  Bit Score: 106.62  E-value: 1.79e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1681045956  25 LLGGGERADLFRFGVvdPTPVTGMQGALPtRSVSLLRPRFSQEVEGDRMLTTRGERAL-YLKGVRWVAPVPDLFTQALMR 103
Cdd:COG3218    24 SLPAPPPPTLYDLTP--PLPAAAAAGPLP-AQLLVAEPTAPGALDSDRIVVRPDPGQLqYYAGARWADPPPRLLQDLLVE 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1681045956 104 QYAARAPDVRLTGVRNATGASHALQIDIERFEARYaldggEKAPPTVIIEGDATLFDLSDRRPVEAKRFLVQEPASANTT 183
Cdd:COG3218   101 ALEASGRFRAVGRPGSGLAADYRLEGELRDFEQDF-----DGGAPRAVVELRARLVDDRDGRVVASRRFEARVPAASADA 175

                         170       180
                  ....*....|....*....|....*..
gi 1681045956 184 SGIVAAFDRAVARSTTELTDWSADTAR 210
Cdd:COG3218   176 AGVVAALNQALDQLLAEIVAWLAAQLA 202
ABC_trans_aux pfam03886
ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial ...
 42-201 1.04e-15

ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.


Pssm-ID: 427568  Cd Length: 155  Bit Score: 71.58  E-value: 1.04e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1681045956  42 PTPVTGMQGALPTRSVSLLRPRFSQEVEGDRMLTTRGERAL-YLKGVRWVAPVPDLFTQALMRQYAARAPDVRLT--GVR 118
Cdd:pfam03886   1 PAPAATPAASSPQPQLEVGPVSLPDYLDRPQIVVRTGDGQLqLAENARWAEPLDDQITRALAADLSRRLPSRRVAafPWP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1681045956 119 NATGASHALQIDIERFEARYAldggekapPTVIIEGDATLFDLSDRRPVEAKRFLVQEPASANTTSGIVAAFDRAVARST 198
Cdd:pfam03886  81 LGGTPDYRLQVDVRRFDGRPG--------GNAVLEARWTLLDAGGGRVLTSRSFRISEPVAGDGYAALVAALSQALAQLA 152


                  ...
gi 1681045956 199 TEL 201
Cdd:pfam03886 153 AQI 155
PqiC COG3009
Intermembrane transporter PqiABC lipoprotein subunit PqiC [Cell wall/membrane/envelope ...
 41-196 2.17e-13

Intermembrane transporter PqiABC lipoprotein subunit PqiC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442246 [Multi-domain]  Cd Length: 198  Bit Score: 66.55  E-value: 2.17e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1681045956  41 DPTPVTGMQGALPTRSVSLLRPRFSQEVEGDRMLTTRGERAL-YLKGVRWVAPVPDLFTQALMRQYAARAP--DVRLTGV 117
Cdd:COG3009    33 PPAAPAAAAAAAAAPVIEVGPVSLPDYLDRPQIVYRTGDGRLvIAENHRWAEPLSDQLTRALAANLAARLPgaRVAAQPW 112

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1681045956 118 RNATGASHALQIDIERFEARYalDGgekappTVIIEGDATLFDLSDRRPVEAKRFLVQEPASANTTSGIVAAFDRAVAR 196
Cdd:COG3009   113 PLAGRPDYRLRVDVTRFDGRP--DG------QAVLSAQWSLRRGGGGGPLLSRRFSIEEPLAGDGYDALVAALSQALAQ 183
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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