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Conserved domains on  [gi|1689966990|ref|WP_139329042|]
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integrase core domain-containing protein, partial [Yersinia pestis]

Protein Classification

integrase core domain-containing protein( domain architecture ID 10616106)

integrase core domain-containing protein may function in DNA integration or recombination

CATH:  3.30.420.10
EC:  3.1.26.-
Gene Ontology:  GO:0003677|GO:0046872|GO:0015074|GO:0005524|GO:0032196|GO:0006310|GO:0016893
PubMed:  11774877|28059770|7801124
SCOP:  4000539

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rve_3 pfam13683
Integrase core domain;
1-53 5.91e-27

Integrase core domain;


:

Pssm-ID: 433402 [Multi-domain]  Cd Length: 67  Bit Score: 92.28  E-value: 5.91e-27
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1689966990  1 DNAFIESFNGSLRDECLNVHGFLSLEDAQEKIEQWRQEYNHFRPYSSLNNLTP 53
Cdd:pfam13683 15 QNGLVESFNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
 
Name Accession Description Interval E-value
rve_3 pfam13683
Integrase core domain;
1-53 5.91e-27

Integrase core domain;


Pssm-ID: 433402 [Multi-domain]  Cd Length: 67  Bit Score: 92.28  E-value: 5.91e-27
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1689966990  1 DNAFIESFNGSLRDECLNVHGFLSLEDAQEKIEQWRQEYNHFRPYSSLNNLTP 53
Cdd:pfam13683 15 QNGLVESFNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
transpos_IS3 NF033516
IS3 family transposase;
1-57 1.75e-26

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 98.41  E-value: 1.75e-26
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1689966990   1 DNAFIESFNGSLRDECLNVHGFLSLEDAQEKIEQWRQEYNHFRPYSSLNNLTPAEFA 57
Cdd:NF033516  313 DNAVAESFFGTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPAEFE 369
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
1-62 5.33e-26

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 95.99  E-value: 5.33e-26
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1689966990   1 DNAFIESFNGSLRDECLNVHGFLSLEDAQEKIEQWRQEYNHFRPYSSLNNLTPAEFARSHQK 62
Cdd:COG2801   246 DNAFIESFFGTLKYELLYRRRFESLEEAREAIEEYIEFYNHERPHSSLGYLTPAEYEKQLAA 307
transpos_IS481 NF033577
IS481 family transposase; null
 2-55 3.02e-13

IS481 family transposase; null


Pssm-ID: 468094 [Multi-domain]  Cd Length: 283  Bit Score: 61.45  E-value: 3.02e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1689966990   2 NAFIESFNGSLRDECLNVHGFLSLEDAQEKIEQWRQEYNHFRPYSSLNNLTPAE 55
Cdd:NF033577  228 NGKVERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTPAE 281
PHA02517 PHA02517
putative transposase OrfB; Reviewed
 1-55 4.55e-11

putative transposase OrfB; Reviewed


Pssm-ID: 222853 [Multi-domain]  Cd Length: 277  Bit Score: 55.64  E-value: 4.55e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1689966990   1 DNAFIESFNGSLRDECLNVHGFLSLEDAQEKIEQWRQEYNHFRPYSSLNNLTPAE 55
Cdd:PHA02517  207 DNAPAESINGLYKAEVIHRVSWKNREEVELATLEWVAWYNNRRLHERLGYTPPAE 261
 
Name Accession Description Interval E-value
rve_3 pfam13683
Integrase core domain;
1-53 5.91e-27

Integrase core domain;


Pssm-ID: 433402 [Multi-domain]  Cd Length: 67  Bit Score: 92.28  E-value: 5.91e-27
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1689966990  1 DNAFIESFNGSLRDECLNVHGFLSLEDAQEKIEQWRQEYNHFRPYSSLNNLTP 53
Cdd:pfam13683 15 QNGLVESFNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
transpos_IS3 NF033516
IS3 family transposase;
1-57 1.75e-26

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 98.41  E-value: 1.75e-26
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1689966990   1 DNAFIESFNGSLRDECLNVHGFLSLEDAQEKIEQWRQEYNHFRPYSSLNNLTPAEFA 57
Cdd:NF033516  313 DNAVAESFFGTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPAEFE 369
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
1-62 5.33e-26

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 95.99  E-value: 5.33e-26
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1689966990   1 DNAFIESFNGSLRDECLNVHGFLSLEDAQEKIEQWRQEYNHFRPYSSLNNLTPAEFARSHQK 62
Cdd:COG2801   246 DNAFIESFFGTLKYELLYRRRFESLEEAREAIEEYIEFYNHERPHSSLGYLTPAEYEKQLAA 307
transpos_IS481 NF033577
IS481 family transposase; null
 2-55 3.02e-13

IS481 family transposase; null


Pssm-ID: 468094 [Multi-domain]  Cd Length: 283  Bit Score: 61.45  E-value: 3.02e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1689966990   2 NAFIESFNGSLRDECLNVHGFLSLEDAQEKIEQWRQEYNHFRPYSSLNNLTPAE 55
Cdd:NF033577  228 NGKVERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTPAE 281
PHA02517 PHA02517
putative transposase OrfB; Reviewed
 1-55 4.55e-11

putative transposase OrfB; Reviewed


Pssm-ID: 222853 [Multi-domain]  Cd Length: 277  Bit Score: 55.64  E-value: 4.55e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1689966990   1 DNAFIESFNGSLRDECLNVHGFLSLEDAQEKIEQWRQEYNHFRPYSSLNNLTPAE 55
Cdd:PHA02517  207 DNAPAESINGLYKAEVIHRVSWKNREEVELATLEWVAWYNNRRLHERLGYTPPAE 261
rve_2 pfam13333
Integrase core domain;
6-56 6.83e-06

Integrase core domain;


Pssm-ID: 372570 [Multi-domain]  Cd Length: 52  Bit Score: 38.78  E-value: 6.83e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 1689966990  6 ESFNGSLRDECLNVHGFLSLEDAQEKIEQWRQEYNHFRpyssLNNLTPAEF 56
Cdd:pfam13333  1 ESFFGSLKTEMVYGEHFKTLEELELAIFDYIEWYNNKR----LKGLSPVQY 47
Rve COG3316
Transposase (or an inactivated derivative), DDE domain [Mobilome: prophages, transposons];
5-58 5.76e-05

Transposase (or an inactivated derivative), DDE domain [Mobilome: prophages, transposons];


Pssm-ID: 442545 [Multi-domain]  Cd Length: 235  Bit Score: 38.35  E-value: 5.76e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1689966990   5 IESFNGSLRDECLNVHGFLSLEDAQEKIEQWRQEYNHFRPYSSLNNLTPAEFAR 58
Cdd:COG3316   166 IERDHRTLKRRERPMRGFKSFRTAQRFLSGFEAYYNFRRPHRSLNGATPARVAR 219
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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