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Conserved domains on  [gi|1690920338|ref|WP_139615510|]
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BLUF domain-containing protein [Paracoccus liaowanqingii]

Protein Classification

BLUF domain-containing protein( domain architecture ID 10522878)

BLUF domain-containing protein similar to Rhodobacter sphaeroides transcriptional antirepressor AppA that senses both the light climate and the intracellular redox state

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BLUF pfam04940
Sensors of blue-light using FAD; The BLUF domain has been shown to bind FAD in the AppA ...
 6-92 7.39e-25

Sensors of blue-light using FAD; The BLUF domain has been shown to bind FAD in the AppA protein. AppA is involved in the repression of photosynthesis genes in response to blue-light.


:

Pssm-ID: 461495  Cd Length: 89  Bit Score: 91.03  E-value: 7.39e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1690920338   6 LIY-SSYHGGIEIESIGKILDVSRANNRREDITGSLIVDSEDFVQLLEGSQTAIANCFMRITLDNRHRNLKILLSERLDI 84
Cdd:pfam04940   1 LIYvSRAAADLSEEDLADILEQSRRNNARLGITGVLLYDGGRFLQVLEGPEEAVDALYERIKRDPRHTDVTVLEEGPIEE 80


                  ....*...
gi 1690920338  85 RLFKSWSM 92
Cdd:pfam04940  81 RRFPDWSM 88
 
Name Accession Description Interval E-value
BLUF pfam04940
Sensors of blue-light using FAD; The BLUF domain has been shown to bind FAD in the AppA ...
 6-92 7.39e-25

Sensors of blue-light using FAD; The BLUF domain has been shown to bind FAD in the AppA protein. AppA is involved in the repression of photosynthesis genes in response to blue-light.


Pssm-ID: 461495  Cd Length: 89  Bit Score: 91.03  E-value: 7.39e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1690920338   6 LIY-SSYHGGIEIESIGKILDVSRANNRREDITGSLIVDSEDFVQLLEGSQTAIANCFMRITLDNRHRNLKILLSERLDI 84
Cdd:pfam04940   1 LIYvSRAAADLSEEDLADILEQSRRNNARLGITGVLLYDGGRFLQVLEGPEEAVDALYERIKRDPRHTDVTVLEEGPIEE 80


                  ....*...
gi 1690920338  85 RLFKSWSM 92
Cdd:pfam04940  81 RRFPDWSM 88
BLUF smart01034
Sensors of blue-light using FAD; The BLUF domain has been shown to bind FAD in the AppA ...
 3-92 1.21e-24

Sensors of blue-light using FAD; The BLUF domain has been shown to bind FAD in the AppA protein. AppA is involved in the repression of photosynthesis genes in response to blue-light.


Pssm-ID: 198102  Cd Length: 92  Bit Score: 90.71  E-value: 1.21e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1690920338    3 LNRLIYSS-YHGGIEIESIGKILDVSRANNRREDITGSLIVDSEDFVQLLEGSQTAIANCFMRITLDNRHRNLKILLSER 81
Cdd:smart01034   1 LHRLVYVSrARPDLSPEDLEDILAQARRNNARLGITGVLLYNGGHFLQVLEGPEEAVEALYERIQRDPRHRDVQVLLYEP 80

                           90
                   ....*....|.
gi 1690920338   82 LDIRLFKSWSM 92
Cdd:smart01034  81 IPERRFPDWSM 91
 
Name Accession Description Interval E-value
BLUF pfam04940
Sensors of blue-light using FAD; The BLUF domain has been shown to bind FAD in the AppA ...
 6-92 7.39e-25

Sensors of blue-light using FAD; The BLUF domain has been shown to bind FAD in the AppA protein. AppA is involved in the repression of photosynthesis genes in response to blue-light.


Pssm-ID: 461495  Cd Length: 89  Bit Score: 91.03  E-value: 7.39e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1690920338   6 LIY-SSYHGGIEIESIGKILDVSRANNRREDITGSLIVDSEDFVQLLEGSQTAIANCFMRITLDNRHRNLKILLSERLDI 84
Cdd:pfam04940   1 LIYvSRAAADLSEEDLADILEQSRRNNARLGITGVLLYDGGRFLQVLEGPEEAVDALYERIKRDPRHTDVTVLEEGPIEE 80


                  ....*...
gi 1690920338  85 RLFKSWSM 92
Cdd:pfam04940  81 RRFPDWSM 88
BLUF smart01034
Sensors of blue-light using FAD; The BLUF domain has been shown to bind FAD in the AppA ...
 3-92 1.21e-24

Sensors of blue-light using FAD; The BLUF domain has been shown to bind FAD in the AppA protein. AppA is involved in the repression of photosynthesis genes in response to blue-light.


Pssm-ID: 198102  Cd Length: 92  Bit Score: 90.71  E-value: 1.21e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1690920338    3 LNRLIYSS-YHGGIEIESIGKILDVSRANNRREDITGSLIVDSEDFVQLLEGSQTAIANCFMRITLDNRHRNLKILLSER 81
Cdd:smart01034   1 LHRLVYVSrARPDLSPEDLEDILAQARRNNARLGITGVLLYNGGHFLQVLEGPEEAVEALYERIQRDPRHRDVQVLLYEP 80

                           90
                   ....*....|.
gi 1690920338   82 LDIRLFKSWSM 92
Cdd:smart01034  81 IPERRFPDWSM 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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