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Conserved domains on  [gi|1691018145|ref|WP_139690457|]
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MULTISPECIES: type IV conjugative transfer system protein TraL [Aeromonas]

Protein Classification

type IV conjugative transfer system protein TraL( domain architecture ID 10014359)

type IV conjugative transfer system protein TraL is involved in F pilin formation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK13707 PRK13707
type IV conjugative transfer system protein TraL;
3-102 7.62e-55

type IV conjugative transfer system protein TraL;


:

Pssm-ID: 184263  Cd Length: 101  Bit Score: 165.58  E-value: 7.62e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691018145   3 SEDSINKYRFPKTLSEQRRFLGLPYDEAIPTFIPLAWGLYAGSQMLGICAAALIWFAINTAKKGRGSMWLYNMLYWYFPT 82
Cdd:PRK13707    2 SGDELDKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIIAAVLVWFGIRKLKKGRGSSWLRDLIYWYLPT 81

                          90       100
                  ....*....|....*....|
gi 1691018145  83 SLFRVVFKTIPDSSFRQWIR 102
Cdd:PRK13707   82 ALLRGIFHNVPDSCFRQWIK 101
 
Name Accession Description Interval E-value
PRK13707 PRK13707
type IV conjugative transfer system protein TraL;
3-102 7.62e-55

type IV conjugative transfer system protein TraL;


Pssm-ID: 184263  Cd Length: 101  Bit Score: 165.58  E-value: 7.62e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691018145   3 SEDSINKYRFPKTLSEQRRFLGLPYDEAIPTFIPLAWGLYAGSQMLGICAAALIWFAINTAKKGRGSMWLYNMLYWYFPT 82
Cdd:PRK13707    2 SGDELDKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIIAAVLVWFGIRKLKKGRGSSWLRDLIYWYLPT 81

                          90       100
                  ....*....|....*....|
gi 1691018145  83 SLFRVVFKTIPDSSFRQWIR 102
Cdd:PRK13707   82 ALLRGIFHNVPDSCFRQWIK 101
TraL pfam07178
TraL protein; This family consists of several bacterial TraL proteins. TraL is a predicted ...
 10-101 8.99e-24

TraL protein; This family consists of several bacterial TraL proteins. TraL is a predicted peripheral membrane protein which is thought to be involved in bacterial sex pilus assembly. The exact function of this family is unclear.


Pssm-ID: 429337  Cd Length: 90  Bit Score: 86.57  E-value: 8.99e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691018145  10 YRFPKTLSEQRRFLGLPYDEAIPTFIPLAWGLYAGSQMLGICAAALIWFAINTAKKGRGSMWLYNMLYWYFPTSLFRvvF 89
Cdd:pfam07178   1 YRIPQYLDDPERILFWTLDELMPALVGFVWGILLQQFVIGLVLGLLAAWLYRKLKKGRGPGFLLHLAYWYLPTSFLG--L 78

                          90
                  ....*....|..
gi 1691018145  90 KTIPDSSFRQWI 101
Cdd:pfam07178  79 KATPPSHIRELV 90
TraL_TIGR TIGR02762
type IV conjugative transfer system protein TraL; This protein is part of the type IV ...
 8-101 6.74e-20

type IV conjugative transfer system protein TraL; This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown. [Cellular processes, Conjugation]


Pssm-ID: 274286  Cd Length: 94  Bit Score: 76.64  E-value: 6.74e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691018145   8 NKYRFPKTLSEQRRFLGLPYDEAIPTFIPLAWGLYAGSQMLGICAAALIWFA--INTAKKGRGSMWLYNMLYWYFPTSLF 85
Cdd:TIGR02762   1 LVYKIPKYLDEQPRILGWPLDEFLPGATLFGVGILSGKALIGLILGAAVMLIwkLRRLKGGEGPNFLLHLFYWYLPASLN 80

                          90
                  ....*....|....*.
gi 1691018145  86 RvvFKTIPDSSFRQWI 101
Cdd:TIGR02762  81 T--LRATPPSHKRIWL 94
MFS_MFSD11 cd17407
UNC93-like Major facilitator superfamily domain-containing protein 11; This group is composed ...
 24-59 7.75e-03

UNC93-like Major facilitator superfamily domain-containing protein 11; This group is composed of UNC93-like protein MFSD11 (also called major facilitator superfamily domain-containing protein 11 or protein ET) and similar proteins, most of which are uncharacterized. MFSD11 is ubiquitously expressed in the periphery and the central nervous system of mice, where it is expressed in excitatory and inhibitory mouse brain neurons. Its expression is affected by altered energy homeostasis, suggesting plausible involvement in the energy regulation. MFSD11 belongs to the Unc-93 family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.


Pssm-ID: 340965  Cd Length: 387  Bit Score: 34.16  E-value: 7.75e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1691018145  24 GLPYDEAIPTFI-PLAWGLYAGSQMLGIcAAALIWFA 59
Cdd:cd17407    75 GLTYSLFIASFIqPMTWSLYTASVLLGI-GAAVLWTG 110
 
Name Accession Description Interval E-value
PRK13707 PRK13707
type IV conjugative transfer system protein TraL;
3-102 7.62e-55

type IV conjugative transfer system protein TraL;


Pssm-ID: 184263  Cd Length: 101  Bit Score: 165.58  E-value: 7.62e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691018145   3 SEDSINKYRFPKTLSEQRRFLGLPYDEAIPTFIPLAWGLYAGSQMLGICAAALIWFAINTAKKGRGSMWLYNMLYWYFPT 82
Cdd:PRK13707    2 SGDELDKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIIAAVLVWFGIRKLKKGRGSSWLRDLIYWYLPT 81

                          90       100
                  ....*....|....*....|
gi 1691018145  83 SLFRVVFKTIPDSSFRQWIR 102
Cdd:PRK13707   82 ALLRGIFHNVPDSCFRQWIK 101
TraL pfam07178
TraL protein; This family consists of several bacterial TraL proteins. TraL is a predicted ...
 10-101 8.99e-24

TraL protein; This family consists of several bacterial TraL proteins. TraL is a predicted peripheral membrane protein which is thought to be involved in bacterial sex pilus assembly. The exact function of this family is unclear.


Pssm-ID: 429337  Cd Length: 90  Bit Score: 86.57  E-value: 8.99e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691018145  10 YRFPKTLSEQRRFLGLPYDEAIPTFIPLAWGLYAGSQMLGICAAALIWFAINTAKKGRGSMWLYNMLYWYFPTSLFRvvF 89
Cdd:pfam07178   1 YRIPQYLDDPERILFWTLDELMPALVGFVWGILLQQFVIGLVLGLLAAWLYRKLKKGRGPGFLLHLAYWYLPTSFLG--L 78

                          90
                  ....*....|..
gi 1691018145  90 KTIPDSSFRQWI 101
Cdd:pfam07178  79 KATPPSHIRELV 90
TraL_TIGR TIGR02762
type IV conjugative transfer system protein TraL; This protein is part of the type IV ...
 8-101 6.74e-20

type IV conjugative transfer system protein TraL; This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown. [Cellular processes, Conjugation]


Pssm-ID: 274286  Cd Length: 94  Bit Score: 76.64  E-value: 6.74e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1691018145   8 NKYRFPKTLSEQRRFLGLPYDEAIPTFIPLAWGLYAGSQMLGICAAALIWFA--INTAKKGRGSMWLYNMLYWYFPTSLF 85
Cdd:TIGR02762   1 LVYKIPKYLDEQPRILGWPLDEFLPGATLFGVGILSGKALIGLILGAAVMLIwkLRRLKGGEGPNFLLHLFYWYLPASLN 80

                          90
                  ....*....|....*.
gi 1691018145  86 RvvFKTIPDSSFRQWI 101
Cdd:TIGR02762  81 T--LRATPPSHKRIWL 94
MFS_MFSD11 cd17407
UNC93-like Major facilitator superfamily domain-containing protein 11; This group is composed ...
 24-59 7.75e-03

UNC93-like Major facilitator superfamily domain-containing protein 11; This group is composed of UNC93-like protein MFSD11 (also called major facilitator superfamily domain-containing protein 11 or protein ET) and similar proteins, most of which are uncharacterized. MFSD11 is ubiquitously expressed in the periphery and the central nervous system of mice, where it is expressed in excitatory and inhibitory mouse brain neurons. Its expression is affected by altered energy homeostasis, suggesting plausible involvement in the energy regulation. MFSD11 belongs to the Unc-93 family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.


Pssm-ID: 340965  Cd Length: 387  Bit Score: 34.16  E-value: 7.75e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1691018145  24 GLPYDEAIPTFI-PLAWGLYAGSQMLGIcAAALIWFA 59
Cdd:cd17407    75 GLTYSLFIASFIqPMTWSLYTASVLLGI-GAAVLWTG 110
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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