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Conserved domains on  [gi|1691076607|ref|WP_139730445|]
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FMN-binding protein, partial [Escherichia coli]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FMN_bind super family cl01081
This conserved region includes the FMN-binding site of the NqrC protein as well as the NosR ...
 11-58 3.29e-21

This conserved region includes the FMN-binding site of the NqrC protein as well as the NosR and NirI regulatory proteins;


The actual alignment was detected with superfamily member PRK05346:

Pssm-ID: 470065  Cd Length: 256  Bit Score: 82.58  E-value: 3.29e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1691076607  11 KIVQDKPEHADEYTVDGISGATLTSTGVEKSINYWMGPQGYGQFLQRL 58
Cdd:PRK05346  203 KVVKGGASAKDEHGVDGLSGATLTSNGVQNSFKFWLGEEGYGPFLKKL 250
 
Name Accession Description Interval E-value
PRK05346 PRK05346
Na(+)-translocating NADH-quinone reductase subunit C; Provisional
 11-58 3.29e-21

Na(+)-translocating NADH-quinone reductase subunit C; Provisional


Pssm-ID: 235423  Cd Length: 256  Bit Score: 82.58  E-value: 3.29e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1691076607  11 KIVQDKPEHADEYTVDGISGATLTSTGVEKSINYWMGPQGYGQFLQRL 58
Cdd:PRK05346  203 KVVKGGASAKDEHGVDGLSGATLTSNGVQNSFKFWLGEEGYGPFLKKL 250
NqrC COG2869
Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC [Energy production and ...
 21-60 1.42e-18

Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC [Energy production and conversion]; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC is part of the Pathway/BioSystem: Na+-translocating NADH dehydrogenase


Pssm-ID: 442116  Cd Length: 257  Bit Score: 75.62  E-value: 1.42e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1691076607  21 DEYTVDGISGATLTSTGVEKSINYWMGPQGYGQFLQRLAS 60
Cdd:COG2869   215 DEHEVDGLSGATLTSNGVTNMLKFWLGENGYGPFLKKLRE 254
nqrC TIGR01938
NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit; This model represents the NqrC ...
 11-55 3.23e-10

NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit; This model represents the NqrC subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273886  Cd Length: 251  Bit Score: 53.16  E-value: 3.23e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1691076607  11 KIVQDKPEHA-DEYTVDGISGATLTSTGVEKSINYWMGPqgYGQFL 55
Cdd:TIGR01938 206 EVVKGNGASAkAEHSVDGISGATLTSNGVQESFKFWLGP--YGPFL 249
FMN_bind smart00900
This conserved region includes the FMN-binding site of the NqrC protein as well as the NosR ...
 9-46 2.05e-07

This conserved region includes the FMN-binding site of the NqrC protein as well as the NosR and NirI regulatory proteins;


Pssm-ID: 214897 [Multi-domain]  Cd Length: 86  Bit Score: 43.49  E-value: 2.05e-07
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1691076607   9 VPKIVQDKPEHADEYTVDGISGATLTSTGVEKSINYWM 46
Cdd:smart00900 49 LEKLAKEIVKKQSGGDVDAISGATITSRAVKDAVKRAL 86
FMN_bind pfam04205
FMN-binding domain; This conserved region includes the FMN-binding site of the NqrC protein as ...
 5-46 7.64e-06

FMN-binding domain; This conserved region includes the FMN-binding site of the NqrC protein as well as the NosR and NirI regulatory proteins. This domain is post-translationally flavinylated that may facilitate electron transfer, and thus, resembles multiheme cytochromes.


Pssm-ID: 461226 [Multi-domain]  Cd Length: 71  Bit Score: 39.13  E-value: 7.64e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 1691076607  5 LFATVPKIVQDKPEHADEytVDGISGATLTSTGVEKSINYWM 46
Cdd:pfam04205 32 LGIKEQKVKKDKIEGGQD--VDAISGATITSRAVVEAVKNAL 71
 
Name Accession Description Interval E-value
PRK05346 PRK05346
Na(+)-translocating NADH-quinone reductase subunit C; Provisional
 11-58 3.29e-21

Na(+)-translocating NADH-quinone reductase subunit C; Provisional


Pssm-ID: 235423  Cd Length: 256  Bit Score: 82.58  E-value: 3.29e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1691076607  11 KIVQDKPEHADEYTVDGISGATLTSTGVEKSINYWMGPQGYGQFLQRL 58
Cdd:PRK05346  203 KVVKGGASAKDEHGVDGLSGATLTSNGVQNSFKFWLGEEGYGPFLKKL 250
NqrC COG2869
Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC [Energy production and ...
 21-60 1.42e-18

Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC [Energy production and conversion]; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC is part of the Pathway/BioSystem: Na+-translocating NADH dehydrogenase


Pssm-ID: 442116  Cd Length: 257  Bit Score: 75.62  E-value: 1.42e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1691076607  21 DEYTVDGISGATLTSTGVEKSINYWMGPQGYGQFLQRLAS 60
Cdd:COG2869   215 DEHEVDGLSGATLTSNGVTNMLKFWLGENGYGPFLKKLRE 254
nqrC TIGR01938
NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit; This model represents the NqrC ...
 11-55 3.23e-10

NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit; This model represents the NqrC subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273886  Cd Length: 251  Bit Score: 53.16  E-value: 3.23e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1691076607  11 KIVQDKPEHA-DEYTVDGISGATLTSTGVEKSINYWMGPqgYGQFL 55
Cdd:TIGR01938 206 EVVKGNGASAkAEHSVDGISGATLTSNGVQESFKFWLGP--YGPFL 249
FMN_bind smart00900
This conserved region includes the FMN-binding site of the NqrC protein as well as the NosR ...
 9-46 2.05e-07

This conserved region includes the FMN-binding site of the NqrC protein as well as the NosR and NirI regulatory proteins;


Pssm-ID: 214897 [Multi-domain]  Cd Length: 86  Bit Score: 43.49  E-value: 2.05e-07
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1691076607   9 VPKIVQDKPEHADEYTVDGISGATLTSTGVEKSINYWM 46
Cdd:smart00900 49 LEKLAKEIVKKQSGGDVDAISGATITSRAVKDAVKRAL 86
FMN_bind pfam04205
FMN-binding domain; This conserved region includes the FMN-binding site of the NqrC protein as ...
 5-46 7.64e-06

FMN-binding domain; This conserved region includes the FMN-binding site of the NqrC protein as well as the NosR and NirI regulatory proteins. This domain is post-translationally flavinylated that may facilitate electron transfer, and thus, resembles multiheme cytochromes.


Pssm-ID: 461226 [Multi-domain]  Cd Length: 71  Bit Score: 39.13  E-value: 7.64e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 1691076607  5 LFATVPKIVQDKPEHADEytVDGISGATLTSTGVEKSINYWM 46
Cdd:pfam04205 32 LGIKEQKVKKDKIEGGQD--VDAISGATITSRAVVEAVKNAL 71
COG3976 COG3976
Uncharacterized conserved protein, contains FMN-binding domain [General function prediction ...
 25-43 1.56e-03

Uncharacterized conserved protein, contains FMN-binding domain [General function prediction only];


Pssm-ID: 443175  Cd Length: 116  Bit Score: 33.72  E-value: 1.56e-03
                          10
                  ....*....|....*....
gi 1691076607  25 VDGISGATLTSTGVEKSIN 43
Cdd:COG3976    90 VDAVSGATLTSKAIKEAVE 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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