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Conserved domains on  [gi|1697840468|ref|WP_141314382|]
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DUF4255 domain-containing protein [Streptomyces spinoverrucosus]

Protein Classification

DUF4255 domain-containing protein( domain architecture ID 10624034)

DUF4255 domain-containing protein similar to Photorhabdus asymbiotica Pvc16

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pvc16_N pfam14065
Pvc16 N-terminal domain; This protein forms part of a contractile injection system. ...
 4-176 4.24e-22

Pvc16 N-terminal domain; This protein forms part of a contractile injection system. Photorhabdus virulence cassette (PVC) represents one group of extracellular CISs that are present in both bacteria and archaea. This entry include Pvc16. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 190 and 320 amino acids in length. This domain alone in Pvc16 is able to produce PVC particles with normal length but without the outer sheath, indicating the main function of this N-terminal domain in terminating the tube growth.


:

Pssm-ID: 433689  Cd Length: 176  Bit Score: 88.56  E-value: 4.24e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697840468   4 DANACLRALLAPALPAGAG-----LRFEPPGR---DGPGGEGLGAFVFHVEEDPRARSVEWTdlRDGDGRVVARRGPVtR 75
Cdd:pfam14065   1 AVTAALRRLLNRYLPEDDIvvlvnVAFDSPDDdwaARTPDPTVNLFLYDIRENPALRNRPPP--VRRDGGVVRRRPPL-A 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697840468  76 YRLHYLLWAHGPDSE--REQALLGTAMAVLAGTPALPHQLLPGPLAQDGAgPVQIALAPPELSCSRLLEVWGALQVPAAP 153
Cdd:pfam14065  78 LNLHYLVTAWGTSAEygEEHRLLGRVLQFLHDNPVLTRENLPGASDLAGL-PERLRIELEPLSLEELSKLWSALGGPYRP 156

                         170       180
                  ....*....|....*....|...
gi 1697840468 154 CLGLVLTaglVPPADTAVPAPAR 176
Cdd:pfam14065 157 SVLYKVT---VVLIDSDEPTSEG 176
 
Name Accession Description Interval E-value
Pvc16_N pfam14065
Pvc16 N-terminal domain; This protein forms part of a contractile injection system. ...
 4-176 4.24e-22

Pvc16 N-terminal domain; This protein forms part of a contractile injection system. Photorhabdus virulence cassette (PVC) represents one group of extracellular CISs that are present in both bacteria and archaea. This entry include Pvc16. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 190 and 320 amino acids in length. This domain alone in Pvc16 is able to produce PVC particles with normal length but without the outer sheath, indicating the main function of this N-terminal domain in terminating the tube growth.


Pssm-ID: 433689  Cd Length: 176  Bit Score: 88.56  E-value: 4.24e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697840468   4 DANACLRALLAPALPAGAG-----LRFEPPGR---DGPGGEGLGAFVFHVEEDPRARSVEWTdlRDGDGRVVARRGPVtR 75
Cdd:pfam14065   1 AVTAALRRLLNRYLPEDDIvvlvnVAFDSPDDdwaARTPDPTVNLFLYDIRENPALRNRPPP--VRRDGGVVRRRPPL-A 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697840468  76 YRLHYLLWAHGPDSE--REQALLGTAMAVLAGTPALPHQLLPGPLAQDGAgPVQIALAPPELSCSRLLEVWGALQVPAAP 153
Cdd:pfam14065  78 LNLHYLVTAWGTSAEygEEHRLLGRVLQFLHDNPVLTRENLPGASDLAGL-PERLRIELEPLSLEELSKLWSALGGPYRP 156

                         170       180
                  ....*....|....*....|...
gi 1697840468 154 CLGLVLTaglVPPADTAVPAPAR 176
Cdd:pfam14065 157 SVLYKVT---VVLIDSDEPTSEG 176
 
Name Accession Description Interval E-value
Pvc16_N pfam14065
Pvc16 N-terminal domain; This protein forms part of a contractile injection system. ...
 4-176 4.24e-22

Pvc16 N-terminal domain; This protein forms part of a contractile injection system. Photorhabdus virulence cassette (PVC) represents one group of extracellular CISs that are present in both bacteria and archaea. This entry include Pvc16. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 190 and 320 amino acids in length. This domain alone in Pvc16 is able to produce PVC particles with normal length but without the outer sheath, indicating the main function of this N-terminal domain in terminating the tube growth.


Pssm-ID: 433689  Cd Length: 176  Bit Score: 88.56  E-value: 4.24e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697840468   4 DANACLRALLAPALPAGAG-----LRFEPPGR---DGPGGEGLGAFVFHVEEDPRARSVEWTdlRDGDGRVVARRGPVtR 75
Cdd:pfam14065   1 AVTAALRRLLNRYLPEDDIvvlvnVAFDSPDDdwaARTPDPTVNLFLYDIRENPALRNRPPP--VRRDGGVVRRRPPL-A 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1697840468  76 YRLHYLLWAHGPDSE--REQALLGTAMAVLAGTPALPHQLLPGPLAQDGAgPVQIALAPPELSCSRLLEVWGALQVPAAP 153
Cdd:pfam14065  78 LNLHYLVTAWGTSAEygEEHRLLGRVLQFLHDNPVLTRENLPGASDLAGL-PERLRIELEPLSLEELSKLWSALGGPYRP 156

                         170       180
                  ....*....|....*....|...
gi 1697840468 154 CLGLVLTaglVPPADTAVPAPAR 176
Cdd:pfam14065 157 SVLYKVT---VVLIDSDEPTSEG 176
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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