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Conserved domains on  [gi|1702256100|ref|WP_142350994|]
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MULTISPECIES: transposase, partial [unclassified Streptococcus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
transpos_ISL3 super family cl41316
ISL3 family transposase;
1-61 3.35e-22

ISL3 family transposase;


The actual alignment was detected with superfamily member NF033550:

Pssm-ID: 468079 [Multi-domain]  Cd Length: 369  Bit Score: 86.87  E-value: 3.35e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1702256100   1 LFPCAKIVLDRFHIVQHLSRAMSRIRVQIMNQFERKSHEYKTIKRYWKLIQQNSRKLSDKQ 61
Cdd:NF033550  197 LLPNAKIVADRFHVVKLANEALDKVRRREQKELRKRRRERKTLKRYRWLLLKNPENLTEKQ 257
 
Name Accession Description Interval E-value
transpos_ISL3 NF033550
ISL3 family transposase;
1-61 3.35e-22

ISL3 family transposase;


Pssm-ID: 468079 [Multi-domain]  Cd Length: 369  Bit Score: 86.87  E-value: 3.35e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1702256100   1 LFPCAKIVLDRFHIVQHLSRAMSRIRVQIMNQFERKSHEYKTIKRYWKLIQQNSRKLSDKQ 61
Cdd:NF033550  197 LLPNAKIVADRFHVVKLANEALDKVRRREQKELRKRRRERKTLKRYRWLLLKNPENLTEKQ 257
COG3464 COG3464
Transposase [Mobilome: prophages, transposons];
1-61 5.91e-17

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442687 [Multi-domain]  Cd Length: 287  Bit Score: 71.80  E-value: 5.91e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1702256100   1 LFPCAKIVLDRFHIVQHLSRAMSRIRVQIMNQF-ERKSHEYKTIKRYWKLIQQNSRKLSDKQ 61
Cdd:COG3464   113 ALPNAVIVADRFHVVKLLNEALDKVRRREQRELrGRRGRERRPLKRSRYLLLKNPENLTEKQ 174
DDE_Tnp_ISL3 pfam01610
Transposase; Transposase proteins are necessary for efficient DNA transposition. Contains ...
 1-61 5.90e-11

Transposase; Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.


Pssm-ID: 426344  Cd Length: 238  Bit Score: 55.30  E-value: 5.90e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1702256100   1 LFPCAKIVLDRFHIVQHLSRAMSRIRVQIMNqfERKSHEYKTIKRYWKLIQQNSRKLSDKQ 61
Cdd:pfam01610  71 VLPNAKIVFDRFHVVKLANEALDEVRRREQK--ELKERLRKGLKGSRWLLLKNPENLTEEQ 129
 
Name Accession Description Interval E-value
transpos_ISL3 NF033550
ISL3 family transposase;
1-61 3.35e-22

ISL3 family transposase;


Pssm-ID: 468079 [Multi-domain]  Cd Length: 369  Bit Score: 86.87  E-value: 3.35e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1702256100   1 LFPCAKIVLDRFHIVQHLSRAMSRIRVQIMNQFERKSHEYKTIKRYWKLIQQNSRKLSDKQ 61
Cdd:NF033550  197 LLPNAKIVADRFHVVKLANEALDKVRRREQKELRKRRRERKTLKRYRWLLLKNPENLTEKQ 257
COG3464 COG3464
Transposase [Mobilome: prophages, transposons];
1-61 5.91e-17

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442687 [Multi-domain]  Cd Length: 287  Bit Score: 71.80  E-value: 5.91e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1702256100   1 LFPCAKIVLDRFHIVQHLSRAMSRIRVQIMNQF-ERKSHEYKTIKRYWKLIQQNSRKLSDKQ 61
Cdd:COG3464   113 ALPNAVIVADRFHVVKLLNEALDKVRRREQRELrGRRGRERRPLKRSRYLLLKNPENLTEKQ 174
DDE_Tnp_ISL3 pfam01610
Transposase; Transposase proteins are necessary for efficient DNA transposition. Contains ...
 1-61 5.90e-11

Transposase; Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.


Pssm-ID: 426344  Cd Length: 238  Bit Score: 55.30  E-value: 5.90e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1702256100   1 LFPCAKIVLDRFHIVQHLSRAMSRIRVQIMNqfERKSHEYKTIKRYWKLIQQNSRKLSDKQ 61
Cdd:pfam01610  71 VLPNAKIVFDRFHVVKLANEALDEVRRREQK--ELKERLRKGLKGSRWLLLKNPENLTEEQ 129
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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