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Conserved domains on  [gi|1704606684|ref|WP_142370538|]
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MULTISPECIES: sodium ion-translocating decarboxylase subunit beta, partial [Klebsiella]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OadB super family cl43551
Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, beta subunit [Energy production ...
 1-75 5.53e-42

Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, beta subunit [Energy production and conversion];


The actual alignment was detected with superfamily member COG1883:

Pssm-ID: 441487  Cd Length: 373  Bit Score: 139.49  E-value: 5.53e-42
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1704606684   1 AGVLMAKLMNVFSRHKINPLIGSAGVSAVPMAARVSNKVGLEADGQNFLLMHAMGPNVAGVIGSAIAAGVMLKYV 75
Cdd:COG1883   298 GGVLFAKLMNLFSKGKINPLIGAAGVSAVPMAARVAQKVGQEEDPSNFLLMHAMGPNVAGVIGSAVAAGVLLSLL 372
 
Name Accession Description Interval E-value
OadB COG1883
Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, beta subunit [Energy production ...
 1-75 5.53e-42

Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, beta subunit [Energy production and conversion];


Pssm-ID: 441487  Cd Length: 373  Bit Score: 139.49  E-value: 5.53e-42
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1704606684   1 AGVLMAKLMNVFSRHKINPLIGSAGVSAVPMAARVSNKVGLEADGQNFLLMHAMGPNVAGVIGSAIAAGVMLKYV 75
Cdd:COG1883   298 GGVLFAKLMNLFSKGKINPLIGAAGVSAVPMAARVAQKVGQEEDPSNFLLMHAMGPNVAGVIGSAVAAGVLLSLL 372
OAD_beta pfam03977
Na+-transporting oxaloacetate decarboxylase beta subunit; Members of this family are integral ...
 1-75 5.37e-41

Na+-transporting oxaloacetate decarboxylase beta subunit; Members of this family are integral membrane proteins. The decarboxylation reactions they catalyze are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis.


Pssm-ID: 427626  Cd Length: 344  Bit Score: 136.42  E-value: 5.37e-41
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1704606684   1 AGVLMAKLMNVFSRHKINPLIGSAGVSAVPMAARVSNKVGLEADGQNFLLMHAMGPNVAGVIGSAIAAGVMLKYV 75
Cdd:pfam03977 270 GGVLFAKLMNLFSKGKINPLIGAAGVSAVPMAARVVQKVGQEEDPQNFLLMHAMGPNVAGVIGSAVAAGVLLSLL 344
Na_pump_decarbB TIGR01109
sodium ion-translocating decarboxylase, beta subunit; This model describes the beta subunits ...
 1-70 2.31e-34

sodium ion-translocating decarboxylase, beta subunit; This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane. [Transport and binding proteins, Cations and iron carrying compounds, Energy metabolism, Other]


Pssm-ID: 130179  Cd Length: 354  Bit Score: 119.50  E-value: 2.31e-34
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704606684   1 AGVLMAKLMNVFSRHKINPLIGSAGVSAVPMAARVSNKVGLEADGQNFLLMHAMGPNVAGVIGSAIAAGV 70
Cdd:TIGR01109 285 GGVLMAKLMNLFLKEKINPLIGSAGVSAVPMAARVSNKLGLEEDPQNFLLMHAMGPNVAGVIGSAIAAGV 354
PRK15477 PRK15477
oxaloacetate decarboxylase subunit beta; Provisional
 1-78 1.64e-33

oxaloacetate decarboxylase subunit beta; Provisional


Pssm-ID: 185374 [Multi-domain]  Cd Length: 433  Bit Score: 118.53  E-value: 1.64e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1704606684   1 AGVLMAKLMNVFSRHKINPLIGSAGVSAVPMAARVSNKVGLEADGQNFLLMHAMGPNVAGVIGSAIAAGVMLKYVLAM 78
Cdd:PRK15477  356 AGVLMAKLLNLCSKNKINPLIGSAGVSAVPMAARVSNKVGLESDPQNFLLMHAMGPNVAGVIGSAIAAGVMLKYVLAM 433
 
Name Accession Description Interval E-value
OadB COG1883
Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, beta subunit [Energy production ...
 1-75 5.53e-42

Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, beta subunit [Energy production and conversion];


Pssm-ID: 441487  Cd Length: 373  Bit Score: 139.49  E-value: 5.53e-42
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1704606684   1 AGVLMAKLMNVFSRHKINPLIGSAGVSAVPMAARVSNKVGLEADGQNFLLMHAMGPNVAGVIGSAIAAGVMLKYV 75
Cdd:COG1883   298 GGVLFAKLMNLFSKGKINPLIGAAGVSAVPMAARVAQKVGQEEDPSNFLLMHAMGPNVAGVIGSAVAAGVLLSLL 372
OAD_beta pfam03977
Na+-transporting oxaloacetate decarboxylase beta subunit; Members of this family are integral ...
 1-75 5.37e-41

Na+-transporting oxaloacetate decarboxylase beta subunit; Members of this family are integral membrane proteins. The decarboxylation reactions they catalyze are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis.


Pssm-ID: 427626  Cd Length: 344  Bit Score: 136.42  E-value: 5.37e-41
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1704606684   1 AGVLMAKLMNVFSRHKINPLIGSAGVSAVPMAARVSNKVGLEADGQNFLLMHAMGPNVAGVIGSAIAAGVMLKYV 75
Cdd:pfam03977 270 GGVLFAKLMNLFSKGKINPLIGAAGVSAVPMAARVVQKVGQEEDPQNFLLMHAMGPNVAGVIGSAVAAGVLLSLL 344
Na_pump_decarbB TIGR01109
sodium ion-translocating decarboxylase, beta subunit; This model describes the beta subunits ...
 1-70 2.31e-34

sodium ion-translocating decarboxylase, beta subunit; This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane. [Transport and binding proteins, Cations and iron carrying compounds, Energy metabolism, Other]


Pssm-ID: 130179  Cd Length: 354  Bit Score: 119.50  E-value: 2.31e-34
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704606684   1 AGVLMAKLMNVFSRHKINPLIGSAGVSAVPMAARVSNKVGLEADGQNFLLMHAMGPNVAGVIGSAIAAGV 70
Cdd:TIGR01109 285 GGVLMAKLMNLFLKEKINPLIGSAGVSAVPMAARVSNKLGLEEDPQNFLLMHAMGPNVAGVIGSAIAAGV 354
PRK15477 PRK15477
oxaloacetate decarboxylase subunit beta; Provisional
 1-78 1.64e-33

oxaloacetate decarboxylase subunit beta; Provisional


Pssm-ID: 185374 [Multi-domain]  Cd Length: 433  Bit Score: 118.53  E-value: 1.64e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1704606684   1 AGVLMAKLMNVFSRHKINPLIGSAGVSAVPMAARVSNKVGLEADGQNFLLMHAMGPNVAGVIGSAIAAGVMLKYVLAM 78
Cdd:PRK15477  356 AGVLMAKLLNLCSKNKINPLIGSAGVSAVPMAARVSNKVGLESDPQNFLLMHAMGPNVAGVIGSAIAAGVMLKYVLAM 433
PRK15475 PRK15475
oxaloacetate decarboxylase subunit beta; Provisional
 1-78 1.86e-33

oxaloacetate decarboxylase subunit beta; Provisional


Pssm-ID: 185372 [Multi-domain]  Cd Length: 433  Bit Score: 118.53  E-value: 1.86e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1704606684   1 AGVLMAKLMNVFSRHKINPLIGSAGVSAVPMAARVSNKVGLEADGQNFLLMHAMGPNVAGVIGSAIAAGVMLKYVLAM 78
Cdd:PRK15475  356 AGVLMAKLLNLCSKNKINPLIGSAGVSAVPMAARVSNKVGLESDPQNFLLMHAMGPNVAGVIGSAIAAGVMLKYVLAM 433
PRK15476 PRK15476
oxaloacetate decarboxylase subunit beta; Provisional
 1-78 5.17e-33

oxaloacetate decarboxylase subunit beta; Provisional


Pssm-ID: 185373 [Multi-domain]  Cd Length: 433  Bit Score: 117.37  E-value: 5.17e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1704606684   1 AGVLMAKLMNVFSRHKINPLIGSAGVSAVPMAARVSNKVGLEADGQNFLLMHAMGPNVAGVIGSAIAAGVMLKYVLAM 78
Cdd:PRK15476  356 AGVLMAKLLNLCSKNKINPLIGSAGVSAVPMAARVSNKVGLESDPQNFLLMHAMGPNVAGVIGSAIAAGVMLKYVLAM 433
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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