|
Name |
Accession |
Description |
Interval |
E-value |
| XkdP |
COG1652 |
Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion ... |
405-566 |
4.20e-18 |
|
Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion transport and metabolism];
Pssm-ID: 441258 [Multi-domain] Cd Length: 163 Bit Score: 81.98 E-value: 4.20e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 405 EELAAARSGTVIALKSLSEYRLPAGASADARDIVDQAARQAGEALAAIDGLPAQPEAVGTALPELASTIEAAVGPVIA-E 483
Cdd:COG1652 1 VAAAAAAAALAALLPAVSAAAATVLALAAAAALAVVAGLGAAVGAGGALAAALPLAAGLAAAVAAAAAAAVLIAPVAVmR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 484 SGDIGNGASEQAAATGPKTIEQAPLTQARNSVIIRRGDTLWQISRRVYGQGVRYTTIYLANQDQINNPDLIEPGQIFGVP 563
Cdd:COG1652 81 AGAAAKLSPAVTVAEEAAAPSAELAPDAPKTYTVKPGDTLWGIAKRFYGDPARWPEIAEANRDQIKNPDLIYPGQVLRIP 160
|
...
gi 1705230451 564 DEA 566
Cdd:COG1652 161 ALE 163
|
|
| PRK11198 |
PRK11198 |
LysM domain/BON superfamily protein; Provisional |
515-564 |
6.42e-09 |
|
LysM domain/BON superfamily protein; Provisional
Pssm-ID: 236880 [Multi-domain] Cd Length: 147 Bit Score: 54.92 E-value: 6.42e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 1705230451 515 VIIRRGDTLWQISRRVYGQGVRYTTIYLANQDQINNPDLIEPGQIFGVPD 564
Cdd:PRK11198 98 YTVKSGDTLSAIAKKVYGNANKYNKIFEANKPMLKSPDKIYPGQVLRIPE 147
|
|
| Ig_like_BLP2 |
NF040520 |
Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus ... |
119-351 |
8.48e-07 |
|
Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus Acinetobacter, resembles the much larger biofilm-associated proteins Bap and Blp1 in N-terminal sequence and the presence of tandem Ig-like repeats.
Pssm-ID: 468522 [Multi-domain] Cd Length: 729 Bit Score: 51.96 E-value: 8.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 119 TVIAGRAEPDATVEVAAGD-KIIAAIKAGPSGDFAIVLDQPLpagdhqlvlrATGKNGETVLSDETATVSVP-ETEDGK- 195
Cdd:NF040520 351 TSIEGRAEANAKVQIKDADgKVIGTGTADAQGKFQITLSPAL----------KTSQKGTIIVEDAAGNQSKPlEITAGKd 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 196 LLAmvtkPGKASRLINvpAAGNTDTDLASVD--------------TGNA----------SPAFPELPGA------ASDLV 245
Cdd:NF040520 421 TIA----PDKPTAQIN--AAGTSVTGTAEANakieikdsagkvigTGTAdadgkftitiSPALTDKNIGkvyaidAAGNR 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 246 ATAPPISPTLPAAAPESPRAQTPVADI-----QISA-VEIEGSRLFIAGRAPSGASLLGFANDQTVGRAKATNDGNFVIE 319
Cdd:NF040520 495 SDATDVTGTKDTIAPNKPVLQKVTDDVgavkgAIAAgGETDDAKPKLSGSGEAKATLTIYDNGQAIGTVTVGDNGKWSFT 574
|
250 260 270
....*....|....*....|....*....|..
gi 1705230451 320 GVIDLPVGNHTIAVELMDGAGKTALrVEVPFN 351
Cdd:NF040520 575 LDKDLALGKHKITLTQTDAAGNTSE-VSDPFT 605
|
|
| LysM |
cd00118 |
Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain ... |
514-558 |
7.84e-06 |
|
Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
Pssm-ID: 212030 [Multi-domain] Cd Length: 45 Bit Score: 42.86 E-value: 7.84e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1705230451 514 SVIIRRGDTLWQISRRvYgqGVRYTTIYLANqdQINNPDLIEPGQ 558
Cdd:cd00118 2 TYTVKPGDTLWSIAKK-Y--GVTVEELAAAN--PLINPDCIYPGQ 41
|
|
| LysM |
pfam01476 |
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety ... |
515-563 |
3.34e-05 |
|
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
Pssm-ID: 396179 [Multi-domain] Cd Length: 43 Bit Score: 41.23 E-value: 3.34e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1705230451 515 VIIRRGDTLWQISRRvygQGVRYTTIYLANqdQINNPDlIEPGQIFGVP 563
Cdd:pfam01476 1 YTVKKGDTLSSIAKR---YGITVEQLAELN--GLSSPN-LYVGQKLKIP 43
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
61-269 |
4.80e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 46.38 E-value: 4.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 61 AAPATGASTDVASAPPIATPADAPQPPASAPVPEAASQAPATSAAPAFDVLRVE-PNGSTVIAGRAEPDATVEVAAGDKI 139
Cdd:PRK07003 387 AAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDdAADGDAPVPAKANARASADSRCDER 466
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 140 IAAIKAGPSGDFAIVLDQPLPAGDHQLVLRATGKNGETVLSDETATVSVPETEDGKLLAMVTKPGKASRlinVPAAgntd 219
Cdd:PRK07003 467 DAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPP---TPAA---- 539
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1705230451 220 tDLASVDTGNASPAFPELPGA----ASD----LVATAPPISPTLPAAAPESPRAQTPV 269
Cdd:PRK07003 540 -AAPAARAGGAAAALDVLRNAgmrvSSDrgarAAAAAKPAAAPAAAPKPAAPRVAVQV 596
|
|
| spore_safA |
TIGR02899 |
spore coat assembly protein SafA; SafA (YrbB) (SafA) of Bacillus subtilis is a protein found ... |
517-563 |
4.93e-05 |
|
spore coat assembly protein SafA; SafA (YrbB) (SafA) of Bacillus subtilis is a protein found at the interface of the spore cortex and spore coat, and is dependent on SpoVID for its localization. This model is based on the N-terminal LysM (lysin motif) domain (see pfamAM model pfam01476) of SafA and, from several other spore-forming species, the protein with the most similar N-terminal region. However, this set of proteins differs greatly in C-terminal of the LysM domaim; blocks of 12-residue and 13-residue repeats are found in the Bacillus cereus group, tandem LysM domains in Thermoanaerobacter tengcongensis MB4, etc. in which one of which is found in most examples of endospore-forming bacteria. [Cellular processes, Sporulation and germination]
Pssm-ID: 131945 [Multi-domain] Cd Length: 44 Bit Score: 40.94 E-value: 4.93e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1705230451 517 IRRGDTLWQISRRVygqGVRYTTIYLANQdQINNPDLIEPGQIFGVP 563
Cdd:TIGR02899 1 VQKGDTLWKIAKKY---GVDFDELIQANP-QLSNPNLIYPGMKIKIP 43
|
|
| PRK10856 |
PRK10856 |
cytoskeleton protein RodZ; |
60-136 |
3.12e-04 |
|
cytoskeleton protein RodZ;
Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 43.09 E-value: 3.12e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1705230451 60 SAAPATGASTDVASAPPIATPADAPQPPASAPVPEAASQAPATSAAPAFDVLRVEPNGSTVIAGRAEPDATVEVAAG 136
Cdd:PRK10856 176 PAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADPN 252
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
6-107 |
4.84e-04 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 43.07 E-value: 4.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 6 GWLALSVLAVATLLMVFFV-LPRISDEGQQLTDKINEAGEmvkeAVTQKQETEIGSAAPATGASTDVASAPPIATPAdAP 84
Cdd:COG5373 3 LLLILIGLLVLALLVGLLGrVARLRRRVEELEAELAEAAE----AASAPAEPEPEAAAAATAAAPEAAPAPVPEAPA-AP 77
|
90 100
....*....|....*....|...
gi 1705230451 85 QPPASAPVPEAASQAPATSAAPA 107
Cdd:COG5373 78 PAAAEAPAPAAAAPPAEAEPAAA 100
|
|
| LysM |
smart00257 |
Lysin motif; |
516-558 |
1.19e-03 |
|
Lysin motif;
Pssm-ID: 197609 [Multi-domain] Cd Length: 44 Bit Score: 37.04 E-value: 1.19e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1705230451 516 IIRRGDTLWQISRRvygQGVRYTTIYLANqdQINNPDLIEPGQ 558
Cdd:smart00257 3 TVKKGDTLSSIARR---YGISVSDLLELN--NILDPDNLQVGQ 40
|
|
| Big_6 |
pfam17936 |
Bacterial Ig domain; This domain is found in a wide variety of extracellular bacterial ... |
104-189 |
1.29e-03 |
|
Bacterial Ig domain; This domain is found in a wide variety of extracellular bacterial proteins often in multiple tandem copies.
Pssm-ID: 465576 [Multi-domain] Cd Length: 83 Bit Score: 37.99 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 104 AAPAFDVLRVEPNGsTVIAGRAEPDATVEVAAGD-KIIAAIKAGPSGDFAIVLDQPLPAGDhQLVLRATGKNGETvlsDE 182
Cdd:pfam17936 1 APAAPTNLAVSDDG-TTLTGTGEAGATVTVKDADgNVLGTGTVDADGTFSVTLDPAQANGE-TLSVTATDAAGNV---SP 75
|
....*..
gi 1705230451 183 TATVSVP 189
Cdd:pfam17936 76 AATITAP 82
|
|
| MSA-2c |
pfam12238 |
Merozoite surface antigen 2c; This family of proteins is found in eukaryotes. Proteins in this ... |
44-108 |
1.68e-03 |
|
Merozoite surface antigen 2c; This family of proteins is found in eukaryotes. Proteins in this family are typically between 263 and 318 amino acids in length. There is a conserved SFT sequence motif. MSA-2 is a plasma membrane glycoprotein which can be found in Babesia bovis species.
Pssm-ID: 289042 Cd Length: 216 Bit Score: 40.12 E-value: 1.68e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1705230451 44 EMVKEAVTQKQETEIGSAAPATGASTDVASAPPIATPADAPQPPASAPVPEAASQAPATSAAPAF 108
Cdd:pfam12238 144 ELEKELQEKKPSRTSSTETPAPGDAESGVQQPPASTPPQGPAPTTPSPSPESSGNLQGQQAGSSF 208
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
12-107 |
2.77e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 40.50 E-value: 2.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 12 VLAVATLLMVFF--VLPRisdegQQLTDKInEAGEMVKEAVTQKQETEIGSAAPATGASTDVASAPPIATPADAPQPPAS 89
Cdd:PRK14965 350 VLEMALLKMATLapGAPV-----SELLDRL-EALERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAP 423
|
90
....*....|....*...
gi 1705230451 90 APVPEAASQAPATSAAPA 107
Cdd:PRK14965 424 APAPPAAAAPPARSADPA 441
|
|
| rad23 |
TIGR00601 |
UV excision repair protein Rad23; All proteins in this family for which functions are known ... |
38-136 |
3.10e-03 |
|
UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 40.26 E-value: 3.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 38 KINEAGEMVKeAVTQKQETEIGSAAPATG--ASTDVASAPPIATPADAPQPPASAPVPEAASQAPATSAAPAfdvlrvEP 115
Cdd:TIGR00601 63 KIKEKDFVVV-MVSKPKTGTGKVAPPAATptSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPE------SP 135
|
90 100
....*....|....*....|.
gi 1705230451 116 NGSTVIAGraePDATVEVAAG 136
Cdd:TIGR00601 136 STSVPSSG---SDAASTLVVG 153
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| XkdP |
COG1652 |
Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion ... |
405-566 |
4.20e-18 |
|
Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion transport and metabolism];
Pssm-ID: 441258 [Multi-domain] Cd Length: 163 Bit Score: 81.98 E-value: 4.20e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 405 EELAAARSGTVIALKSLSEYRLPAGASADARDIVDQAARQAGEALAAIDGLPAQPEAVGTALPELASTIEAAVGPVIA-E 483
Cdd:COG1652 1 VAAAAAAAALAALLPAVSAAAATVLALAAAAALAVVAGLGAAVGAGGALAAALPLAAGLAAAVAAAAAAAVLIAPVAVmR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 484 SGDIGNGASEQAAATGPKTIEQAPLTQARNSVIIRRGDTLWQISRRVYGQGVRYTTIYLANQDQINNPDLIEPGQIFGVP 563
Cdd:COG1652 81 AGAAAKLSPAVTVAEEAAAPSAELAPDAPKTYTVKPGDTLWGIAKRFYGDPARWPEIAEANRDQIKNPDLIYPGQVLRIP 160
|
...
gi 1705230451 564 DEA 566
Cdd:COG1652 161 ALE 163
|
|
| PRK11198 |
PRK11198 |
LysM domain/BON superfamily protein; Provisional |
515-564 |
6.42e-09 |
|
LysM domain/BON superfamily protein; Provisional
Pssm-ID: 236880 [Multi-domain] Cd Length: 147 Bit Score: 54.92 E-value: 6.42e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 1705230451 515 VIIRRGDTLWQISRRVYGQGVRYTTIYLANQDQINNPDLIEPGQIFGVPD 564
Cdd:PRK11198 98 YTVKSGDTLSAIAKKVYGNANKYNKIFEANKPMLKSPDKIYPGQVLRIPE 147
|
|
| Ig_like_BLP2 |
NF040520 |
Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus ... |
119-351 |
8.48e-07 |
|
Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus Acinetobacter, resembles the much larger biofilm-associated proteins Bap and Blp1 in N-terminal sequence and the presence of tandem Ig-like repeats.
Pssm-ID: 468522 [Multi-domain] Cd Length: 729 Bit Score: 51.96 E-value: 8.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 119 TVIAGRAEPDATVEVAAGD-KIIAAIKAGPSGDFAIVLDQPLpagdhqlvlrATGKNGETVLSDETATVSVP-ETEDGK- 195
Cdd:NF040520 351 TSIEGRAEANAKVQIKDADgKVIGTGTADAQGKFQITLSPAL----------KTSQKGTIIVEDAAGNQSKPlEITAGKd 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 196 LLAmvtkPGKASRLINvpAAGNTDTDLASVD--------------TGNA----------SPAFPELPGA------ASDLV 245
Cdd:NF040520 421 TIA----PDKPTAQIN--AAGTSVTGTAEANakieikdsagkvigTGTAdadgkftitiSPALTDKNIGkvyaidAAGNR 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 246 ATAPPISPTLPAAAPESPRAQTPVADI-----QISA-VEIEGSRLFIAGRAPSGASLLGFANDQTVGRAKATNDGNFVIE 319
Cdd:NF040520 495 SDATDVTGTKDTIAPNKPVLQKVTDDVgavkgAIAAgGETDDAKPKLSGSGEAKATLTIYDNGQAIGTVTVGDNGKWSFT 574
|
250 260 270
....*....|....*....|....*....|..
gi 1705230451 320 GVIDLPVGNHTIAVELMDGAGKTALrVEVPFN 351
Cdd:NF040520 575 LDKDLALGKHKITLTQTDAAGNTSE-VSDPFT 605
|
|
| LysM |
cd00118 |
Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain ... |
514-558 |
7.84e-06 |
|
Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
Pssm-ID: 212030 [Multi-domain] Cd Length: 45 Bit Score: 42.86 E-value: 7.84e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1705230451 514 SVIIRRGDTLWQISRRvYgqGVRYTTIYLANqdQINNPDLIEPGQ 558
Cdd:cd00118 2 TYTVKPGDTLWSIAKK-Y--GVTVEELAAAN--PLINPDCIYPGQ 41
|
|
| LysM |
pfam01476 |
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety ... |
515-563 |
3.34e-05 |
|
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
Pssm-ID: 396179 [Multi-domain] Cd Length: 43 Bit Score: 41.23 E-value: 3.34e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1705230451 515 VIIRRGDTLWQISRRvygQGVRYTTIYLANqdQINNPDlIEPGQIFGVP 563
Cdd:pfam01476 1 YTVKKGDTLSSIAKR---YGITVEQLAELN--GLSSPN-LYVGQKLKIP 43
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
61-269 |
4.80e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 46.38 E-value: 4.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 61 AAPATGASTDVASAPPIATPADAPQPPASAPVPEAASQAPATSAAPAFDVLRVE-PNGSTVIAGRAEPDATVEVAAGDKI 139
Cdd:PRK07003 387 AAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDdAADGDAPVPAKANARASADSRCDER 466
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 140 IAAIKAGPSGDFAIVLDQPLPAGDHQLVLRATGKNGETVLSDETATVSVPETEDGKLLAMVTKPGKASRlinVPAAgntd 219
Cdd:PRK07003 467 DAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPP---TPAA---- 539
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1705230451 220 tDLASVDTGNASPAFPELPGA----ASD----LVATAPPISPTLPAAAPESPRAQTPV 269
Cdd:PRK07003 540 -AAPAARAGGAAAALDVLRNAgmrvSSDrgarAAAAAKPAAAPAAAPKPAAPRVAVQV 596
|
|
| spore_safA |
TIGR02899 |
spore coat assembly protein SafA; SafA (YrbB) (SafA) of Bacillus subtilis is a protein found ... |
517-563 |
4.93e-05 |
|
spore coat assembly protein SafA; SafA (YrbB) (SafA) of Bacillus subtilis is a protein found at the interface of the spore cortex and spore coat, and is dependent on SpoVID for its localization. This model is based on the N-terminal LysM (lysin motif) domain (see pfamAM model pfam01476) of SafA and, from several other spore-forming species, the protein with the most similar N-terminal region. However, this set of proteins differs greatly in C-terminal of the LysM domaim; blocks of 12-residue and 13-residue repeats are found in the Bacillus cereus group, tandem LysM domains in Thermoanaerobacter tengcongensis MB4, etc. in which one of which is found in most examples of endospore-forming bacteria. [Cellular processes, Sporulation and germination]
Pssm-ID: 131945 [Multi-domain] Cd Length: 44 Bit Score: 40.94 E-value: 4.93e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1705230451 517 IRRGDTLWQISRRVygqGVRYTTIYLANQdQINNPDLIEPGQIFGVP 563
Cdd:TIGR02899 1 VQKGDTLWKIAKKY---GVDFDELIQANP-QLSNPNLIYPGMKIKIP 43
|
|
| PRK13914 |
PRK13914 |
invasion associated endopeptidase; |
32-231 |
2.18e-04 |
|
invasion associated endopeptidase;
Pssm-ID: 237555 [Multi-domain] Cd Length: 481 Bit Score: 44.02 E-value: 2.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 32 GQQLTDKINEAGEMVKEAVtqKQETEIGSAAPATGASTDVASAPPIATPADAPQPPASAPVPEAASQAPATSAAPAFDVL 111
Cdd:PRK13914 136 GKYLTDKVTSTPVAPTQEV--KKETTTQQAAPAAETKTEVKQTTQATTPAPKVAETKETPVVDQNATTHAVKSGDTIWAL 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 112 RVEPNGSTVIAGRAEPDATVEVAAGDKIIAAIKAGPSGDFAIVLDQPlPAGDHQ---LVLRATGKNGETVLSDETATVSV 188
Cdd:PRK13914 214 SVKYGVSVQDIMSWNNLSSSSIYVGQKLAIKQTANTATPKAEVKTEA-PAAEKQaapVVKENTNTNTATTEKKETTTQQQ 292
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1705230451 189 PETedgKLLAMVTKPGKA---------SRLINVPAAGNTDTDLASVDTGNAS 231
Cdd:PRK13914 293 TAP---KAPTEAAKPAPApstntnankTNTNTNTNTNNTNTSTPSKNTNTNT 341
|
|
| PRK11855 |
PRK11855 |
dihydrolipoamide acetyltransferase; Reviewed |
66-271 |
2.54e-04 |
|
dihydrolipoamide acetyltransferase; Reviewed
Pssm-ID: 237000 [Multi-domain] Cd Length: 547 Bit Score: 44.04 E-value: 2.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 66 GASTDVASAPPIATPADAPQPPASAPVPEAASQAPATSAAPAFDVLRV----EPNGSTVIAgraepdatVEVAAGDKIIA 141
Cdd:PRK11855 77 AAGAAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGVVEVKVpdigEITEVEVIE--------WLVKVGDTVEE 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 142 aikagpsgdfaivlDQPLPagdhqlvlratgkngeTVLSDEtATVSVPETEDGKLLAMVTKPG-KASrlinvpaagnTDT 220
Cdd:PRK11855 149 --------------DQSLI----------------TVETDK-ATMEIPSPVAGVVKEIKVKVGdKVS----------VGS 187
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1705230451 221 DLASVDTGNASPAFPELPGAASdlvATAPPISPTLPAAAPESPRAQTPVAD 271
Cdd:PRK11855 188 LLVVIEVAAAAPAAAAAPAAAA---PAAAAAAAPAPAPAAAAAPAAAAPAA 235
|
|
| PRK10856 |
PRK10856 |
cytoskeleton protein RodZ; |
60-136 |
3.12e-04 |
|
cytoskeleton protein RodZ;
Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 43.09 E-value: 3.12e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1705230451 60 SAAPATGASTDVASAPPIATPADAPQPPASAPVPEAASQAPATSAAPAFDVLRVEPNGSTVIAGRAEPDATVEVAAG 136
Cdd:PRK10856 176 PAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADPN 252
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
6-107 |
4.84e-04 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 43.07 E-value: 4.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 6 GWLALSVLAVATLLMVFFV-LPRISDEGQQLTDKINEAGEmvkeAVTQKQETEIGSAAPATGASTDVASAPPIATPAdAP 84
Cdd:COG5373 3 LLLILIGLLVLALLVGLLGrVARLRRRVEELEAELAEAAE----AASAPAEPEPEAAAAATAAAPEAAPAPVPEAPA-AP 77
|
90 100
....*....|....*....|...
gi 1705230451 85 QPPASAPVPEAASQAPATSAAPA 107
Cdd:COG5373 78 PAAAEAPAPAAAAPPAEAEPAAA 100
|
|
| LysM |
smart00257 |
Lysin motif; |
516-558 |
1.19e-03 |
|
Lysin motif;
Pssm-ID: 197609 [Multi-domain] Cd Length: 44 Bit Score: 37.04 E-value: 1.19e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1705230451 516 IIRRGDTLWQISRRvygQGVRYTTIYLANqdQINNPDLIEPGQ 558
Cdd:smart00257 3 TVKKGDTLSSIARR---YGISVSDLLELN--NILDPDNLQVGQ 40
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
59-282 |
1.24e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.90 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 59 GSAAPATGASTDVASAPPIATPADAPQPPASAPVPEAASQAPATSAAPAFDVLRVEPNGSTVIAGRAEPDATVEVAAGdk 138
Cdd:PRK07764 592 PGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGW-- 669
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 139 iiaaikAGPSGDFAIVLDQPLPAGDHQlvlRATGKNGETVLSDETATVSVPEtedgkllamvtkPGKASRLINVPAAGNT 218
Cdd:PRK07764 670 ------PAKAGGAAPAAPPPAPAPAAP---AAPAGAAPAQPAPAPAATPPAG------------QADDPAAQPPQAAQGA 728
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1705230451 219 DTDLASVDTGNASPAFPELPGAASDLVATAPPISPTLPAAAPESPRAQTPVADIQISAVEIEGS 282
Cdd:PRK07764 729 SAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPS 792
|
|
| PRK12438 |
PRK12438 |
hypothetical protein; Provisional |
46-145 |
1.26e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 171499 [Multi-domain] Cd Length: 991 Bit Score: 41.77 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 46 VKEAVTQKQETEIGSAAPATGAstDVASAPPIATPADAPQPPASAP-VPEAASQAPATSAAPAFDVLRVEPNGSTVIAGR 124
Cdd:PRK12438 887 LAEALDQVFGPGTGRVATAPGG--DAASAPPPGAGPPAPPQAVPPPrTTQPPAAPPRGPDVPPAAVAELRETLADLRSAQ 964
|
90 100
....*....|....*....|.
gi 1705230451 125 AEPDATVEVAAGDKIIAAIKA 145
Cdd:PRK12438 965 RSGDFTAYGAALDRLEKAIDA 985
|
|
| Big_6 |
pfam17936 |
Bacterial Ig domain; This domain is found in a wide variety of extracellular bacterial ... |
104-189 |
1.29e-03 |
|
Bacterial Ig domain; This domain is found in a wide variety of extracellular bacterial proteins often in multiple tandem copies.
Pssm-ID: 465576 [Multi-domain] Cd Length: 83 Bit Score: 37.99 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 104 AAPAFDVLRVEPNGsTVIAGRAEPDATVEVAAGD-KIIAAIKAGPSGDFAIVLDQPLPAGDhQLVLRATGKNGETvlsDE 182
Cdd:pfam17936 1 APAAPTNLAVSDDG-TTLTGTGEAGATVTVKDADgNVLGTGTVDADGTFSVTLDPAQANGE-TLSVTATDAAGNV---SP 75
|
....*..
gi 1705230451 183 TATVSVP 189
Cdd:pfam17936 76 AATITAP 82
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
56-188 |
1.47e-03 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 41.80 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 56 TEIGSAAPATGASTDVASAPPIATPADAPQPPASAPVPEAASQAPATSAAPAfdvlrvepngstviAGRAEPDATVEVAA 135
Cdd:PRK12270 39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAA--------------AAAAAPAAPPAAAA 104
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1705230451 136 gdkiiaaiKAGPSGDfaivldqplPAGDHQLVLR----ATGKNGETVLSDETATvSV 188
Cdd:PRK12270 105 --------AAAPAAA---------AVEDEVTPLRgaaaAVAKNMDASLEVPTAT-SV 143
|
|
| MSA-2c |
pfam12238 |
Merozoite surface antigen 2c; This family of proteins is found in eukaryotes. Proteins in this ... |
44-108 |
1.68e-03 |
|
Merozoite surface antigen 2c; This family of proteins is found in eukaryotes. Proteins in this family are typically between 263 and 318 amino acids in length. There is a conserved SFT sequence motif. MSA-2 is a plasma membrane glycoprotein which can be found in Babesia bovis species.
Pssm-ID: 289042 Cd Length: 216 Bit Score: 40.12 E-value: 1.68e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1705230451 44 EMVKEAVTQKQETEIGSAAPATGASTDVASAPPIATPADAPQPPASAPVPEAASQAPATSAAPAF 108
Cdd:pfam12238 144 ELEKELQEKKPSRTSSTETPAPGDAESGVQQPPASTPPQGPAPTTPSPSPESSGNLQGQQAGSSF 208
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
59-265 |
2.03e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 41.01 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 59 GSAAPATGASTDV------ASAPPIATPADAPQPPASAPVPEAASQAPATSAA-----PAFDVLRVEPNGSTVIAGRAEP 127
Cdd:PRK12323 370 GGAGPATAAAAPVaqpapaAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAparrsPAPEALAAARQASARGPGGAPA 449
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 128 DATVEVAAGDKIIAAIKAGPSGdfAIVLDQPLPAGDHQLVLRATGKNGETVLSDETATVSVPETEDgkllamvTKPGKAs 207
Cdd:PRK12323 450 PAPAPAAAPAAAARPAAAGPRP--VAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQ-------PDAAPA- 519
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1705230451 208 rlinvPAAGNTDTDLASVDTGNASPAFPELPGAAsdlvATAPPISPTLPAAAPESPRA 265
Cdd:PRK12323 520 -----GWVAESIPDPATADPDDAFETLAPAPAAA----PAPRAAAATEPVVAPRPPRA 568
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
59-270 |
2.65e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 40.74 E-value: 2.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 59 GSAAPATGASTDVASAPPIATPADAPQPPASAPVPEAASQ-APATSAAPAFDVLRVEPNGSTVIAGRAEPDATVEVAAGD 137
Cdd:PRK07764 395 AAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPApAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAP 474
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 138 KII--------------------AAIKAGPSGDFAIVLDQPLPAgdhqlVLRATGKNGETVLSDETATVSVPETEDGKLL 197
Cdd:PRK07764 475 EPTaapapappaapapaaapaapAAPAAPAGADDAATLRERWPE-----ILAAVPKRSRKTWAILLPEATVLGVRGDTLV 549
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 198 AMVTKPGKASRLINVPAAGNTDTDLASV-------------DTGNASPAFPELPGAASDLVATAPPISPTLPAAAPESPR 264
Cdd:PRK07764 550 LGFSTGGLARRFASPGNAEVLVTALAEElggdwqveavvgpAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAP 629
|
....*.
gi 1705230451 265 AQTPVA 270
Cdd:PRK07764 630 AGAAAA 635
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
48-125 |
2.69e-03 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 41.03 E-value: 2.69e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1705230451 48 EAVTQKQETEIGSAAPATGASTDVASAPPIATPADAPQPPASAPVPEAASQAPATSAAPAFDVLRVEPNGSTVIAGRA 125
Cdd:PRK12270 47 AAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAA 124
|
|
| PRK06549 |
PRK06549 |
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated |
72-111 |
2.70e-03 |
|
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Pssm-ID: 235826 [Multi-domain] Cd Length: 130 Bit Score: 38.25 E-value: 2.70e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1705230451 72 ASAPPIATPADAPQPPASAPVPEAASQAPATSAAPAFDVL 111
Cdd:PRK06549 25 AQAAAPAQPASTPVPVPTEASPQVEAQAPQPAAAAGADAM 64
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
12-107 |
2.77e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 40.50 E-value: 2.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 12 VLAVATLLMVFF--VLPRisdegQQLTDKInEAGEMVKEAVTQKQETEIGSAAPATGASTDVASAPPIATPADAPQPPAS 89
Cdd:PRK14965 350 VLEMALLKMATLapGAPV-----SELLDRL-EALERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAP 423
|
90
....*....|....*...
gi 1705230451 90 APVPEAASQAPATSAAPA 107
Cdd:PRK14965 424 APAPPAAAAPPARSADPA 441
|
|
| rad23 |
TIGR00601 |
UV excision repair protein Rad23; All proteins in this family for which functions are known ... |
38-136 |
3.10e-03 |
|
UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 40.26 E-value: 3.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 38 KINEAGEMVKeAVTQKQETEIGSAAPATG--ASTDVASAPPIATPADAPQPPASAPVPEAASQAPATSAAPAfdvlrvEP 115
Cdd:TIGR00601 63 KIKEKDFVVV-MVSKPKTGTGKVAPPAATptSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPE------SP 135
|
90 100
....*....|....*....|.
gi 1705230451 116 NGSTVIAGraePDATVEVAAG 136
Cdd:TIGR00601 136 STSVPSSG---SDAASTLVVG 153
|
|
| LysM |
COG1388 |
LysM repeat [Cell wall/membrane/envelope biogenesis]; |
402-558 |
4.26e-03 |
|
LysM repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440998 [Multi-domain] Cd Length: 156 Bit Score: 38.15 E-value: 4.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 402 PSAEELAAARSGTVIALKSLSEYRLPAGASADARDIVDQAARQAGEALAAIDGLPAQPEAVGTALPELASTIEAAVGPVI 481
Cdd:COG1388 5 ALSANAALLAAVLTLLAALLLLAAALAAVALLLLAALAPAGLSLAAALNGEALLLLLPAAAAAAKAALAAAPEAAAAAAA 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1705230451 482 AESGDIGNGASEQAAATGPKTieqaplTQARNSVIIRRGDTLWQISRRvygQGVRYTTIYLANqdQINNpDLIEPGQ 558
Cdd:COG1388 85 RYTVKSGDTLSGIARRYGAAA------APSPVTYTVKKGDTLWSIARR---YGVSVEELKRWN--GLSS-DTIRPGQ 149
|
|
| PRK10431 |
PRK10431 |
N-acetylmuramoyl-l-alanine amidase II; Provisional |
81-149 |
5.37e-03 |
|
N-acetylmuramoyl-l-alanine amidase II; Provisional
Pssm-ID: 236692 [Multi-domain] Cd Length: 445 Bit Score: 39.46 E-value: 5.37e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1705230451 81 ADAPQPPASAPVPEAASQAPATSAA----PAFDVLRVEPNGSTVIAGRA---EPDATVEVAAGDKIIAAIKAGPSG 149
Cdd:PRK10431 127 ADVPPPPPPPPVVAKRVETPAVVAPrvsePARNPFKTESNRTTGVISSNtvtRPAARATANTGDKVIIAIDAGHGG 202
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
40-107 |
6.37e-03 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 39.49 E-value: 6.37e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1705230451 40 NEAGEMVKEAVTQKQETEIGSAAPATGASTDVASAPPIATPADAPQPPASAPVPEAASQAPATSAAPA 107
Cdd:PRK12270 48 AAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115
|
|
| PRK12373 |
PRK12373 |
NADH-quinone oxidoreductase subunit E; |
41-149 |
6.98e-03 |
|
NADH-quinone oxidoreductase subunit E;
Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 39.01 E-value: 6.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 41 EAGEMVKEAVTQKQETEIGSAAPATGASTDVASAPPIATPADAPQPPASAPVPEAASQAPATSAAPAfdvlRVEPNGSTV 120
Cdd:PRK12373 211 ALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAARPKSADAETNAALKTPATAPKAAAKNAKAP----EAQPVSGTA 286
|
90 100
....*....|....*....|....*....
gi 1705230451 121 IAGRAEPDATVEVAAGDKIIAAIKAGPSG 149
Cdd:PRK12373 287 AAEPAPKEAAKAAAAAAKPALEDKPRPLG 315
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
59-145 |
9.77e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 38.93 E-value: 9.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1705230451 59 GSAAPATGASTDVASAPPIA-TPADAPQP-----PASAPVPEAASQAPATSAAPAFDVLRVEPNGSTVIAGRAEPDATVE 132
Cdd:PRK14951 367 AAAAEAAAPAEKKTPARPEAaAPAAAPVAqaaaaPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446
|
90
....*....|...
gi 1705230451 133 VAAGDKIIAAIKA 145
Cdd:PRK14951 447 LAPAPPAQAAPET 459
|
|
| |
